mRNA_P-littoralis_Contig118.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig118.42.1
Unique NamemRNA_P-littoralis_Contig118.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig118.42.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.400e-53
Identity = 95/157 (60.51%), Postives = 111/157 (70.70%), Query Frame = 1 
Query:  190 GGEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRNLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGDVIRALNGKTRRNSNINANARVGQDF--HVADTSGEIVMAVTREETSRRIRAASRNTHKSVLWPR 654
            G +  WKKHFIT +SWFDLRL ILGFVS CR+LF+ P  FQ+DSLSPN RRF+ PRN SQD+ EHRFSH R   GTHRNPTA+E K RS  GD+ RA NGK RRN++ N NAR G DF  H       I++AVT+ ET + +RA  RNT   VL PR
Sbjct:  120 GDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVRAWCRNTPAEVLCPR 276
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BLAST of mRNA_P-littoralis_Contig118.42.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.520e-32
Identity = 72/153 (47.06%), Postives = 97/153 (63.40%), Query Frame = 1 
Query:  193 GEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRNLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGDVIRALNGKTRRNSNINANARVGQDFHVADTSGEIVMAVTREETSRRIRAASRNTHKSVLWP 651
            G+  WKKHFIT  SW D+R+CILGFVS CR+LF+  + F+V    P    FI  RN  QD+IEH F H R   G+HRNPTA + K R   GD++R L+G  R  +N N NAR G+DF  +    E+++ V   E S RIRA ++++ ++VL P
Sbjct:  602 GDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPH-FINQRNCGQDVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCR--ANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSP 751
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BLAST of mRNA_P-littoralis_Contig118.42.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.870e-21
Identity = 53/124 (42.74%), Postives = 78/124 (62.90%), Query Frame = 1 
Query:  205 WKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRNLSQDLIEHRFSHYRGNNGTHRNPTAQEVKTRSQTGDVIRALNGKTRRNSNINANARVGQDFHVADTSGEIVM 576
            WK HFIT  SW D+R+CILG VS CR+LF++ + F++  LS +   FI  R + QD++EHR+ H     G+H NPTA + K R+   D+ R+L+G +R N     +AR G+DF  +   G I++
Sbjct:   91 WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLS-DVPHFINLRCIGQDIVEHRYGHMCQCLGSHCNPTAAQAKERAAQEDLQRSLHGISRAN-----HARKGEDFIASGIRGRIML 208
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BLAST of mRNA_P-littoralis_Contig118.42.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.260e-7
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:  193 GEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRPAIFQVDSLSPNDRRFIGPRNLSQ 369
            G+ AWK HFIT  SW D+R+CILG VS CR++F+  + F++  LS +   FI  R + Q
Sbjct:  479 GDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLS-DVPHFINLRYIGQ 536
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig118.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K5I6_9PHAE1.400e-5360.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE1.520e-3247.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE4.870e-2142.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE6.260e-747.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig118contigP-littoralis_Contig118:180592..182566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size823
Hectar predicted targeting categoryother localisation
Exons3
Cds size822
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789494.087019-CDS-P-littoralis_Contig118:180592..1810451680789494.087019-CDS-P-littoralis_Contig118:180592..181045Pylaiella littoralis U1_48CDSP-littoralis_Contig118 180593..181045 -
1680789494.0969355-CDS-P-littoralis_Contig118:181259..1815201680789494.0969355-CDS-P-littoralis_Contig118:181259..181520Pylaiella littoralis U1_48CDSP-littoralis_Contig118 181260..181520 -
1680789494.1109216-CDS-P-littoralis_Contig118:182458..1825661680789494.1109216-CDS-P-littoralis_Contig118:182458..182566Pylaiella littoralis U1_48CDSP-littoralis_Contig118 182459..182566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig118.42.1prot_P-littoralis_Contig118.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig118 180593..182566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig118.42.1

>prot_P-littoralis_Contig118.42.1 ID=prot_P-littoralis_Contig118.42.1|Name=mRNA_P-littoralis_Contig118.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp
PHTSARGPRAEVKPLGSPEHCTSGASSPRFSNGRFAVGEDGHRHGGRALW
TPLAPVVFSLQLVGGEHAWKKHFITRESWFDLRLCILGFVSTCRFLFDRP
AIFQVDSLSPNDRRFIGPRNLSQDLIEHRFSHYRGNNGTHRNPTAQEVKT
RSQTGDVIRALNGKTRRNSNINANARVGQDFHVADTSGEIVMAVTREETS
RRIRAASRNTHKSVLWPRSASRPPSYASFRKRRPDHNPEMDHPNPYKYGF
WRDGPKRGKWGAPLFLHYVPLESA
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mRNA from alignment at P-littoralis_Contig118:180592..182566-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig118.42.1 ID=mRNA_P-littoralis_Contig118.42.1|Name=mRNA_P-littoralis_Contig118.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1975bp|location=Sequence derived from alignment at P-littoralis_Contig118:180592..182566- (Pylaiella littoralis U1_48)
CCTCACACCTCGGCACGCGGTCCACGCGCGGAGGTGAAACCTCTTGGGTC
ACCTGAGCATTGCACCAGTGGAGCCTCGAGTCCAAGGTTCAGCAACGGAA
GGTTCGCGGTGAGTGCAAAAATCGTATTTTCTAGGGTCTCACAGGCGGCC
CCTTCTGACCCCGGCTTCCGACTACCCTCTCTAGCACGACAGCGTGCTCC
TTCCACAGCGGTGGCAAGTGTAGGCTCGCCCATCCCAGCCGTTCGCCATA
CTCATGATCTACTCTCGGGAGCAATCCGCGTGGGAAACGATCGTGTGTGG
GCGAAGATATCAACAAAATGCAGATCGCGAAATAACATGCGACGAGCTCG
GCGGACCTCAGGGCCCTGGTTTTTCGCATTTTTTGCAAATTTTTTAAAAT
GAGGAACGTCTGCTGTTTGTTGTCACAAAAAAAACATTCATCAAAACATT
GTCACGTCCCCATCATGCACCTTCTTTCGCGGTGTTTATTGCAGAGACCG
TACAAATTACTTGATCGTCCCGTCACCGTAGTTGCGCCCGAGATTTAGGC
GCGCAGATTCGTGTATCAGTTTCTCTAGAGAATTACGTAGTAGTTCTTAG
AGGAGGGCTATAAATGGATAAATAGAACAGACAGACGGGGATAGCGGAGC
GAACCTGTCTGTATCCAGGTCTGTAAAGCGAGAGTCCGCGTTTGGTTTGC
CAAGCTGTTTCGAGGCAGAAGTGGCGAGCCAGGGGTGATGTGCGAAAGTC
TGTGGGTATAGTGTGGCCCGACTTTTTGTTTTTCGTTTTCTGCAGGTCAT
AAATCGCTCGCAATAAAACATGTGCACGAGGGCCCTTCAAACCCACTCCA
CAGCAGTGGGTTGGAAAATATGTAGAAAGAATTCACAGCAGCAGCCGCTG
CTCTGTGTAGTGATCGTTCAATGGAAGTTATGATATGTGGCCACCGAAGT
TGACGTTCGGGTGCGATGGAAAATCAGGGACGATTTTCGTACTCGTTCGG
CGCTAAATTCGTCCCCCCCCCCCCTTCGCGTGCTTTCTCTCGACAGGTGG
GGGAGGACGGCCACCGGCATGGCGGTCGGGCGCTTTGGACGCCTCTCGCG
CCCGTGGTTTTTTCCTTGCAGCTTGTAGGCGGAGAGCACGCGTGGAAGAA
GCACTTCATCACGCGCGAGTCGTGGTTCGATCTTCGCCTGTGCATCCTCG
GTTTCGTGAGCACGTGTCGTTTCCTTTTCGACCGTCCTGCGATTTTCCAG
GTGGACAGCCTTTCGCCGAACGACCGACGCTTCATCGGACCACGAAACTT
GAGCCAGGTTAGTGCCACTTTTGACATGTCGCGCGCTCGATGCCTCCGCG
GAAAGTCGGCATAGAGGAAGTCCCTGTTCGTGTCTGAATTAGGGAAGATA
CTTTTGATGCTACTGGCGTGGGATATGGCCACATTTTTTTGCGGCATGAC
TCCGACCTCTCAGCCACCCAATGGATTGACAGCCTTTTGCGCTGTCCGCC
GTCGACGTCTTGCTGCAACAGGACTTGATCGAGCACAGGTTTTCGCACTA
TCGCGGGAACAACGGGACGCACAGGAATCCGACGGCGCAGGAAGTCAAGA
CTCGGTCACAGACCGGGGACGTCATCAGGGCTTTAAACGGGAAGACTCGT
AGAAACTCCAACATAAACGCCAATGCGCGGGTCGGCCAAGACTTCCACGT
GGCCGACACCAGCGGCGAAATCGTGATGGCGGTCACAAGAGAGGAAACGA
GTAGGCGGATTAGAGCTGCAAGTAGAAACACGCACAAGTCTGTCTTGTGG
CCTAGGTCAGCCAGCCGGCCACCCTCTTATGCCTCCTTCCGGAAGCGGAG
ACCAGACCACAACCCTGAGATGGACCACCCGAACCCCTACAAGTACGGGT
TTTGGAGGGATGGCCCAAAAAGAGGGAAATGGGGAGCGCCGTTGTTCTTG
CATTATGTACCCCTCGAGTCCGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig118:180592..182566-

>mRNA_P-littoralis_Contig118.42.1 ID=mRNA_P-littoralis_Contig118.42.1|Name=mRNA_P-littoralis_Contig118.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig118:180592..182566- (Pylaiella littoralis U1_48)
CCTCACACCTCGGCACGCGGTCCACGCGCGGAGGTGAAACCTCTTGGGTC
ACCTGAGCATTGCACCAGTGGAGCCTCGAGTCCAAGGTTCAGCAACGGAA
GGTTCGCGGTGGGGGAGGACGGCCACCGGCATGGCGGTCGGGCGCTTTGG
ACGCCTCTCGCGCCCGTGGTTTTTTCCTTGCAGCTTGTAGGCGGAGAGCA
CGCGTGGAAGAAGCACTTCATCACGCGCGAGTCGTGGTTCGATCTTCGCC
TGTGCATCCTCGGTTTCGTGAGCACGTGTCGTTTCCTTTTCGACCGTCCT
GCGATTTTCCAGGTGGACAGCCTTTCGCCGAACGACCGACGCTTCATCGG
ACCACGAAACTTGAGCCAGGACTTGATCGAGCACAGGTTTTCGCACTATC
GCGGGAACAACGGGACGCACAGGAATCCGACGGCGCAGGAAGTCAAGACT
CGGTCACAGACCGGGGACGTCATCAGGGCTTTAAACGGGAAGACTCGTAG
AAACTCCAACATAAACGCCAATGCGCGGGTCGGCCAAGACTTCCACGTGG
CCGACACCAGCGGCGAAATCGTGATGGCGGTCACAAGAGAGGAAACGAGT
AGGCGGATTAGAGCTGCAAGTAGAAACACGCACAAGTCTGTCTTGTGGCC
TAGGTCAGCCAGCCGGCCACCCTCTTATGCCTCCTTCCGGAAGCGGAGAC
CAGACCACAACCCTGAGATGGACCACCCGAACCCCTACAAGTACGGGTTT
TGGAGGGATGGCCCAAAAAGAGGGAAATGGGGAGCGCCGTTGTTCTTGCA
TTATGTACCCCTCGAGTCCGCA
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