mRNA_P-littoralis_Contig71.129.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig71.129.1
Unique NamemRNA_P-littoralis_Contig71.129.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig71.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig71contigP-littoralis_Contig71:480627..485934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size845
Hectar predicted targeting categoryother localisation
Exons5
Cds size447
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig71.129.1prot_P-littoralis_Contig71.129.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig71 480878..483439 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791478.3309584-UTR-P-littoralis_Contig71:480626..4808771680791478.3309584-UTR-P-littoralis_Contig71:480626..480877Pylaiella littoralis U1_48UTRP-littoralis_Contig71 480627..480877 -
1680791478.407488-UTR-P-littoralis_Contig71:483439..4835021680791478.407488-UTR-P-littoralis_Contig71:483439..483502Pylaiella littoralis U1_48UTRP-littoralis_Contig71 483440..483502 -
1680791478.4180179-UTR-P-littoralis_Contig71:485850..4859341680791478.4180179-UTR-P-littoralis_Contig71:485850..485934Pylaiella littoralis U1_48UTRP-littoralis_Contig71 485851..485934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791478.3431766-CDS-P-littoralis_Contig71:480877..4810671680791478.3431766-CDS-P-littoralis_Contig71:480877..481067Pylaiella littoralis U1_48CDSP-littoralis_Contig71 480878..481067 -
1680791478.3628674-CDS-P-littoralis_Contig71:481880..4820121680791478.3628674-CDS-P-littoralis_Contig71:481880..482012Pylaiella littoralis U1_48CDSP-littoralis_Contig71 481881..482012 -
1680791478.37744-CDS-P-littoralis_Contig71:482333..4824301680791478.37744-CDS-P-littoralis_Contig71:482333..482430Pylaiella littoralis U1_48CDSP-littoralis_Contig71 482334..482430 -
1680791478.3900075-CDS-P-littoralis_Contig71:483411..4834391680791478.3900075-CDS-P-littoralis_Contig71:483411..483439Pylaiella littoralis U1_48CDSP-littoralis_Contig71 483412..483439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig71.129.1

>prot_P-littoralis_Contig71.129.1 ID=prot_P-littoralis_Contig71.129.1|Name=mRNA_P-littoralis_Contig71.129.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
MRRVQSEKPGPWQDSSLLDGGGYRGPGRLKVRTTRENRQHLRLVVTEYGS
DTFKVESFGDLHPGSNTVDLVFGTPGTSEEDQHTMKRQDAPRESGRESCG
EQRGVQHLLTLQHANARATRAGPSGAAGTAGIALFQPTLSQPTASQHT*
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mRNA from alignment at P-littoralis_Contig71:480627..485934-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig71.129.1 ID=mRNA_P-littoralis_Contig71.129.1|Name=mRNA_P-littoralis_Contig71.129.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5308bp|location=Sequence derived from alignment at P-littoralis_Contig71:480627..485934- (Pylaiella littoralis U1_48)
AAGAGCCCCTGCCGCCGCTGTGAGCGATGACCAACCGTTTTCCTCTTTTC
CGACACCTTCCTACTGGTGTCAGGCACCCAGGGTGTGAGTGTCAGGGCCC
GTTCACTGTTTTTCAAAACCCGTGCCTCTCGACGATCGGGTGTCAGGGAA
CCCTGAAAGTCCTCAGGAGAATATGCTGCTAATGAATGGCCCGGAATTAA
TAGCAGGCTTTCAACAATAACACCTGATTATTCTAGGTTTCCAAACGAGC
AATAACCAGGGTTTAGGATCGAATCCCATTCTCTGCTTTTCGGTTCGGGT
GCTATGTGCTGTCGATGTTCAAAAATGTAGCCGCTACAGCAGCAACCCAT
CCCCGCGACCGCTATTTCAGCAGAATGCTCTCCTCGTCATACACCCTTCA
CATCGCCGTGATTGATTTGAAGGCCGTAGATACTTACGTATGCCCCATAT
CTTCGGGTGCTGTGTGCCGGAAGCGTTCAAAAATATGGCTACCACAGCAG
CATTCGAACCACGCCTCGTAGCTCGCAGAATCCAATGAAGGAGTGCTCGT
TTCAAAAATCGGAAATGGTCAATCTGTAGTATGTCGCAAGGGCTTGAATC
CAAGACACATATTTGTCGGTATCATCGGCCGGGTCAGTGTAAGTAAACTA
CAAGTTATTGCTCACAGCGACTGCGTCCGGGAGCATTTTGCTGTGGTAGA
TTCGTACTAGAGATAGAATTTGGAAATCCAGAATAAACAGACGTTTGTCG
AAAGCCTTCATCTTATTTGCACCCTATTTTACGGTGGCCTTAAGCTTACC
TTTTTATAAGGGCCCTTCTGTAGTGGGGCGTTTATCGAAACCTGCACTTA
ATTTGGGGCTATTTATTGAACTGTATGAGAAGTGGGGCGTTCGCTTCTAC
GTTCAACAGCGCTGACATAAACATCTTCACCGACGGCCATAAGAGCTTTC
CCCTCGCTCTGAAGACATGCGTCCCCCACGCGCAGACGTACCGGTGTCTT
CAGCACCTTCTCAAGAACGCCCCGCCGATTGGCTCTGTAAGTAATCGGTC
AATAGTTGCTCTCGGAAGTTGTCTTTGTCGTTGAATCGTGGAGTGAGCTG
TCCTTGTGGTTTTCGTATGACTTTTTCGTATTGCCCTTTTCGTATTTTTG
TGAAAGTGCATACTTGTTGCCACGTTGACGAATTGAGCCCACATTTTGTT
TTGGTTTTTACGTCCTTGCCGTGTTTGATTCAGCCGGCGTGACTGGCGGC
GTCGGTGTATTTTTTGGTGGCCAGTGTTCAAAACAGTATGACGGAAAGGG
TGTTGAACGAAAACTGCCAGAGTACTTTGCCCGTGTGCATTTCAACAGAA
ACATGGTAAGTAGCAGCCGGCACCATCAAGCAGGAGTGTTGCATATGGGT
AGATACGGTACAGTGTTGATACCGCGGGTTGTATAGTATGTCCGTCAACA
CTGGTGCGGTTTACTGTAGGATATCTACCTGAGGCTCTTTGTAATCACCG
CAAAAGTTTGAGAAAACGGTGTTTTGCTGTGGAACGTGGAACAACCACCA
ATATAATTAATGCCTTGCTTCCAACCATCGCGAAAAATGAGCTGGGGAAA
AAACCCGCGAATAATCGATTGGAGGAAAACGTTTTTTTTTCAGAACCGTA
GCCAACAAACACCCAAGCCGGCCTACAGCAGCATCGGCAGCGTGAATAGC
AAAAGCAAGATGAGGGTACCCTAGACAACCACTCTGGCTAGCAAACCCAC
GTAGTGATCTGGTGAAACAATTACAGCAGCGCTTGTCTCCTGTTTTTTGG
CCCACCAAGACACACCCTGCTCGCAACCCGTCTTAACCCAGTGAACAAGC
TGTAGTAGTCCGCTTTGAACGAGCCAGGAATTATAAGGCATGGCATTGCT
CTGATGCTGTCTCATACCGGGGAGTGAAGTTTATGACTGCAACAAAAAGA
CACCACCAGCGCGACTTCGAAAGCGTCTTTCAGCACACACCATATTTTAA
TGCCCCGCTCGCTGAGTTTCACAAAGGCTACGGTAACCGCGTAGCGACAA
TGAAATCGAGGGCCATGATCATGCACACCTCCGTATTGGAAGAATTATGA
TTTGAAAGGTCTCCGGTCTCTGTTTCTGTCTGTTATTTCACACTGTTTAT
TCGATTTCATCACGAAGGAGCATCATCGCCTGTTCCAATTGGACGGAGTT
AGTTTCAAGATTTGTGTCCATGAAATAAATAATTCAGAAGGCGACAATAG
AAGGAGCCGTACCACGCCATCAAAGGCCACTAAGAAGGGTATGCTGCAAA
GAAGTGCTGCCGGGTCCAAAGCTTTCCCAATTACACTGACTGTTCTTGTA
GCGGCCTGGAGCACAAGCCTGCGTTGGCTGCACCTATTTCTGAACTCCCT
CTTCCTCGTTCGCCCCTCTCATTTCCCGGCAGAACCTCGCCAACAACGTA
TTCAACGCCGTACGAGCCCCGTCCAAAGCTCACTTTGACAGCTTCATGCG
GCGGGTGCAGAGCGAAAAACCAGGTACGTTCAACCACCTGATGTCCGCGG
TGCCCTTATCGCAACGAACTCACCATGCTTATAAGCAGGATACGAGGGTT
CGGGACACCGTAACGAGCAACAACGCCGAGTCTCTCATCGACATGGTTGG
CGCAGAGGTAGGAATCTGTTGAAGCTATTTTTCTGCCCCCCCCCCCCTTC
CGTATTTTTGGCGAAAAGCATGATAACTTGGTATGGTTTTGCCCCCGGTG
GGGACGTAGTTTTGAAACCAATGGAGGGAAGACGTTCCCCTACCTGAACA
AGATTTGCCCCCCGGGGTGGTGTTTCTTTGATGGGTACCCCCATCTGGTA
ATTTGTATCTCCTTGCTTCTAGTCGACGACAATTTTAATGCGCTTTTGGC
ATCACTGCGGGAGGGAGGAGCGCCGGCTCTCGGGGCCGACGAAGCCGCTT
TCATTCGGCGCTTGATGACGGCAAATTAATGCTTTGATAAGGTAGCATGC
ATTGCTCATCATCTGCCGTCGATGTTGGTGTTTGTTCGCGTTGTTTTGTG
GTGTGTTGTCACAGTTTACCGCTGAAATACTTGGCAGATATGTACAGCGT
GTACGTGTTTGTGCTTACAGTTGTTTTTTTTGCCATTTTACTTTTTTGGG
GGGGCTTTCCCCCTCCCTGAGGTAATGTACCAAAAAAACAAATGGCTTTC
CCCCCGGGATAAATTGGAAAACGATACCAGCCTCCCCTCCTCCCCCCACA
TTCTGCCGTAGTGTTTAAAACGAACCCGGAAAAAACAAAGATCCCCCCTC
CGTCCAGGGGAAATCAGAGGGTTTAACGGTCACATGGAGATCACCCCCAA
CGGACTGCTCCAAGTTGGAATGTGTTGATAGAGCTCAAGGCCGTCGGTCA
GGGTGTGTATTCTGCTCACGCATAAATCATATTGGATGTTTACTGGTTTC
ACCCATACTTCTTTCCCACCCAATGCCCCCGCTAAATGTAAGTGCGTTTG
ACAGGTCCGTGGCAAGATTCCTCTCTTCTTGATGGTGGAGGGTACCGTGG
ACCTGGTCGTCTCAAAGTACGCACAACACGCGAAAACCGGCAGCACCTCC
GGCGAGCACTACACGCCGCACGCTGTGAAGACGTTTGACACGGAAAGAAC
CCTCAGCAACAAGTGGATCTCTTGTCGTCTCTCTGCCACGTGGAGTACTT
CGGTATTGTAGCGGTAAAAAGCCTGACATGTCCGTGCGAGTTGTATATAT
TTTGGTCAACATACGATCACCCACTGTAGCAGGACACGACTATGGGACAC
ATTCGTACCCGGGACAAAAAGTACGGTTGTTGATGTGCTTTGCCTTTGTT
TTGTTCTCTGTTGTTTGCTGCGCTCGTTCCGATGCTGTCGTCACTGCCCA
AACATGGTTTATCCCATCATAGATTAGTTGTGACGGAGTACGGTAGCGAC
ACTTTCAAAGTCGAGAGCTTCGGAGACTTGCATCCGGGGTCGAACACGGT
TGACCTGGTGTTCGGAACTCCCGGGACATCCGAGGAAGACCAGCATACCA
TGAAGTAAGTGCACGTGCGGCTTCTGCGTTCGTCACAGGATCCCCTGCTG
CCATGTGGTGGCCGTGGCGAAACGCAAGCGTGATTATCTTTGGGCCGTTA
TCTTTCATGCAATTGTTTAGCGTGTATATACTCCCATTAGCTCGTGTTGG
CGCTCTAGGCTCACACCTGTATCGTGTGGAGTTGTACAGTATGGACTCTA
CATTGTTGTACTTGTTCTGTCCCCGATATCGGTCAACTCGGTCTTGATTT
TGCTACTGCTGGTACTACAAAACTCGCCCCCATGTCTAGTGGTGTTTTAT
CTGTTTTCCGTGTTTGTGCCATGCTTTAGAGCGGTACATGTACGTTGATC
GGTTGGACTCATACAAATGGGCTTCCCAAGTGGTAAATAGTTTCGCTATG
TCACACCTCGGTTGGCCCATTATTCGTTGCAATTCATATTGGGGATGCAT
CGAGCGTCCGACTGCAGCCAAGCTGTATTTTAGCGACCAACACTATTACA
TTTTCACGAGGAACATCTTTCCGTGATTTTCATGTGCTGAAACACTTTCT
ATCGTAGCCGGTGCCACACCACTTTGTGTGGCCCCGACGCATGTTTTTGG
TATGTTTTGGAACTATGCTGACTACAACGACTACCGCATCAACGACCTCT
CCTGTCTTTGCCTAAACGTTCAGGCCTCAACAAGATGGACGTGGCCCGCC
AACTCATCGACAAAGTACAGGGCGGCCTACGGTAATAACAGCTTCTGCAT
CCGCCCTCCCTCCCTCGCCACCCTCGTCCACGAACCCACCCTGTTGCCGC
CCAAACCGGTGAAGAAGACGGCAGGACGCCCCAAGGGAAAGCGGAAGAGA
AAGCTGTGGCGAGCAACGGGGAGTACAACACCTCCTCACGCTACAACACG
CGAACGCCCGTGCCACTAGGGCGGGACCTTCGGGAGCGGCGGGTACGGCA
GGTATTGCCCTATTTCAGCCAACGCTGTCTCAGCCAACGGCCTCGCAGCA
CACTTGACCCAGTGATTTTTCTCTGGACAAGGGTTTCCATGGAGCGGGGC
GGGAGGGCGCCAGGACCGCTACCGCCGTAAACTTTTTTGTGTGCGCCTAT
TGCCATTAATAAACACTCTCACGAGTGTTAAGAGTGGAAACTTTCACACT
TTCTCTACCTAAAAGGGGGTTGACACGGGTTAGTCGAGCAAGGCCAGCTG
TTTTGGATTGCTCGTCTGTAGATGAATGATGCAATACGTGAGTCTACCCG
GGTCAAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig71:480627..485934-

>mRNA_P-littoralis_Contig71.129.1 ID=mRNA_P-littoralis_Contig71.129.1|Name=mRNA_P-littoralis_Contig71.129.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig71:480627..485934- (Pylaiella littoralis U1_48)
ATGCGGCGGGTGCAGAGCGAAAAACCAGGTCCGTGGCAAGATTCCTCTCT
TCTTGATGGTGGAGGGTACCGTGGACCTGGTCGTCTCAAAGTACGCACAA
CACGCGAAAACCGGCAGCACCTCCGATTAGTTGTGACGGAGTACGGTAGC
GACACTTTCAAAGTCGAGAGCTTCGGAGACTTGCATCCGGGGTCGAACAC
GGTTGACCTGGTGTTCGGAACTCCCGGGACATCCGAGGAAGACCAGCATA
CCATGAAACGGCAGGACGCCCCAAGGGAAAGCGGAAGAGAAAGCTGTGGC
GAGCAACGGGGAGTACAACACCTCCTCACGCTACAACACGCGAACGCCCG
TGCCACTAGGGCGGGACCTTCGGGAGCGGCGGGTACGGCAGGTATTGCCC
TATTTCAGCCAACGCTGTCTCAGCCAACGGCCTCGCAGCACACTTGA
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