mRNA_P-littoralis_Contig709.4.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig709.4.2
Unique NamemRNA_P-littoralis_Contig709.4.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig709.4.2 vs. uniprot
Match: A0A6H5JA69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA69_9PHAE)

HSP 1 Score: 366 bits (940), Expect = 1.900e-121
Identity = 176/204 (86.27%), Postives = 186/204 (91.18%), Query Frame = 1 
Query:   85 WAHPLVRPELGCLVIARGDMFAQQQQYFYKAVALVIQHGDDGTVALILNRPTTFTMGDVCTGGLQPVPGMEDNVLYMGGHVTGARDDGLDVVNLMHGREDVPGMEVLKGLRLGGLQEALALVAKGEAQPEEFKFFSRYSGWGPGQLEAEVLSGAWELAACDLESILQSHNHPDQPGHFWSEIMWRLRRHRGGSSRAEA---PDT 687
            WAHPLVRPELGCLVIA+  MF  QQQYFYKAVALVIQHGDDGTVALILNRPTTFTMGDVC G LQ VPGMEDNVLYMGG VTGARDDGLDVVNLMHGREDVPGMEV+KGLRLGGL+EALALVA+G AQPEEFKFFSRYSGWGPGQLEAEVL+GAWELAACDLES+L+S NHPDQPGHFW EIM RL+RHRG SS + +   PDT
Sbjct:  159 WAHPLVRPELGCLVIAKQGMFVTQQQYFYKAVALVIQHGDDGTVALILNRPTTFTMGDVCKGDLQSVPGMEDNVLYMGGDVTGARDDGLDVVNLMHGREDVPGMEVVKGLRLGGLKEALALVAQGRAQPEEFKFFSRYSGWGPGQLEAEVLAGAWELAACDLESVLESQNHPDQPGHFWGEIMGRLQRHRGSSSSSSSSALPDT 362
[Close]
BLAST of mRNA_P-littoralis_Contig709.4.2 vs. uniprot
Match: D7FWE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE5_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 5.150e-68
Identity = 106/128 (82.81%), Postives = 114/128 (89.06%), Query Frame = 1 
Query:  313 MGGHVTGARDDGLDVVNLMHGREDVPGMEVLKGLRLGGLQEALALVAKGEAQPEEFKFFSRYSGWGPGQLEAEVLSGAWELAACDLESILQSHNHPDQPGHFWSEIMWRLRRHRGGSSRAE---APDT 687
            MGG VTGARDDGLDVVNLMHGR DVPGMEV+KGLRLGGL+EALALVA+G AQPEEFKFFSRYSGWGPGQLEAEVL GAWELAACDLES+L+S NHPDQPGHFW +IM RL+RHRG SS +     PDT
Sbjct:    1 MGGDVTGARDDGLDVVNLMHGRADVPGMEVVKGLRLGGLKEALALVAQGRAQPEEFKFFSRYSGWGPGQLEAEVLGGAWELAACDLESVLESQNHPDQPGHFWGKIMGRLQRHRGSSSSSSNTAMPDT 128
[Close]
BLAST of mRNA_P-littoralis_Contig709.4.2 vs. uniprot
Match: A0A835ZEY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY4_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.750e-65
Identity = 106/188 (56.38%), Postives = 134/188 (71.28%), Query Frame = 1 
Query:   85 WAHPLVRPELGCLVIARGDMFAQQQQYFYKAVALVIQHGDDGTVALILNRPTTFTMGDVCTG--GLQPVPGMEDNVLYMGGHVTGARDDGLDVVNLMHGREDVPGMEVLKGLRLGGLQEALALVAKGEAQPEEFKFFSRYSGWGPGQLEAEVLSGAWELAACDLESILQSHNHPDQPGHFWSEIMWRL 642
            WAH L  PE GCL++AR  MF + Q+YF  AV LVI+HG  G+V LILN+PT  +MG+V  G  GL  +PG+E N LY GG V   RDDGLDVVN MHGR+D  G+EV+KG++LGGL +ALALVA+G+A P EFKFF R+ GWGPGQL  EV  GAW  AACD+ ++L  +    QP   W+E++ R+
Sbjct:   75 WAHALAAPEKGCLLLARDGMFGESQKYFKNAVILVIEHGATGSVGLILNQPTVRSMGEVTGGDSGLAHLPGLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARM 262
[Close]
BLAST of mRNA_P-littoralis_Contig709.4.2 vs. uniprot
Match: A0A835YX41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX41_9STRA)

HSP 1 Score: 215 bits (547), Expect = 4.240e-64
Identity = 105/186 (56.45%), Postives = 128/186 (68.82%), Query Frame = 1 
Query:   85 WAHPLVRPELGCLVIARGDMFAQQQQYFYKAVALVIQHGDDGTVALILNRPTTFTMGDVCTGGLQPVPGMEDNVLYMGGHVTGARDDGLDVVNLMHGREDVPGMEVLKGLRLGGLQEALALVAKGEAQPEEFKFFSRYSGWGPGQLEAEVLSGAWELAACDLESILQSHNHPDQPGHFWSEIMWRL 642
            WAH L  PE GCL+IA   MF   Q YF +AV L+I+HG  GT  LILN+PTT TM +V  G    + G EDN LY GG V     DG D VNLMHGREDV G E+LKG++LGGL+EALA VA+G AQP+EFKFF RY GW PGQL+ EV +G W LAACD+ +IL ++    QP   WS+++ R+
Sbjct:   37 WAHALAAPEKGCLLIANEGMFDVGQIYFRRAVVLIIEHGARGTAGLILNQPTTSTMVEVTEGQDAQIAGFEDNTLYFGGDVVSGTGDGTDAVNLMHGREDVEGTEILKGVKLGGLEEALARVAEGTAQPQEFKFFCRYCGWAPGQLQEEVKAGIWYLAACDVPTILDNYIQ-GQPDGLWSDVLRRM 221
[Close]
BLAST of mRNA_P-littoralis_Contig709.4.2 vs. uniprot
Match: A0A836CDX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDX0_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.600e-39
Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:  289 GMEDNVLYMGGHVTGARDDGLDVVNLMHGREDVPGMEVLKGLRLGGLQEALALVAKGEAQPEEFKFFSRYSGWGPGQLEAEVLSGAWELAACDLESILQSHNHPDQPGHFWSEIMWRL 642
            G+E N LY GG V   RDDGLDVVN MHGR+D  G+EV+KG++LGGL +ALALVA+G+A P EFKFF R+ GWGPGQL  EV  GAW  AACD+ ++L  +    QP   W+E++ R+
Sbjct:    9 GLERNRLYFGGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQYTDESQPAALWTEVLARM 126
[Close]
BLAST of mRNA_P-littoralis_Contig709.4.2 vs. uniprot
Match: A0A7S0PMA6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PMA6_9CHLO)

HSP 1 Score: 145 bits (365), Expect = 2.620e-36
Identity = 83/189 (43.92%), Postives = 112/189 (59.26%), Query Frame = 1 
Query:   64 RMTSS*LWAHPLVRPELGCLVIARGDMFAQQQQYFYKAVALVIQHGDDGTVALILNRPTTFTMGDVCTGGLQPVPGMEDNVLYMGGHVTGARDDGLDVVNLMHGREDVPG-MEVLKGLRLGGLQEALALVAKGEAQPEEFKFFSRYSGWGPGQLEAEVLSGAWELAACDLESILQSHNHPDQPGHFWSE 627
            ++ S+  WAH +  PE GCL++A    F   QQYF++AV LV++H ++G++ +ILNRPT + MG V +G +  V     N LY GG V      G   V+ +HGREDV G +EVL G+ LGG   A ALV +  A+P+EFKFF+RY GW PGQLE+E   G W   A   E  L+      +P   W E
Sbjct:  140 KLASAAPWAHVIAAPEKGCLLVAADHEFRMSQQYFHQAVILVLEHHENGSMGVILNRPTQYDMGYV-SGDVDGV--FAKNALYFGGDV------GDGTVSFLHGREDVKGSVEVLPGMYLGGYDSACALVEEQGAKPDEFKFFARYCGWAPGQLESECERGVWFPVAGAKELALKQVIQLPKP--LWRE 317
[Close]
BLAST of mRNA_P-littoralis_Contig709.4.2 vs. uniprot
Match: A0A7S0D198_MICPS (Hypothetical protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D198_MICPS)

HSP 1 Score: 146 bits (368), Expect = 4.770e-36
Identity = 80/195 (41.03%), Postives = 110/195 (56.41%), Query Frame = 1 
Query:   49 REQVRRMTSS*LWAHPLVRPELGCLVIARGDMFAQQQQYFYKAVALVIQHGDDGTVALILNRPTTFTMGDVCTGGLQPVPGMEDNVLYMGGHVTGARDDGLDVVNLMHGREDVPG-MEVLKGLRLGGLQEALALVAKGEAQPEEFKFFSRYSGWGPGQLEAEVLSGAWELAACDLESILQSHNHPDQPGHFWSEI 630
            REQ   + +   WAH +  PE GCL++ARGD F Q QQYF++AV L+++H + G++ +ILNRPT ++MG V      P      N LY GG V      G   V+ +HG   V G +EV  G+ LGG + A  LV  GE +  + KFF+RY GWGPGQL++E   G W   AC  +  L+      +P   W E+
Sbjct:  175 REQNPALAAEKPWAHVIGAPERGCLLVARGDNFTQGQQYFHQAVILMLEHNEKGSMGVILNRPTQYSMGYVSGDESGP---FAQNALYFGGDV------GDGTVSFLHGSSSVTGSVEVSAGVFLGGYESACELVKTGEVEANDCKFFARYCGWGPGQLQSECERGVWYPVACSKQIALKQVIQLPKP--LWREV 358
[Close]
BLAST of mRNA_P-littoralis_Contig709.4.2 vs. uniprot
Match: A0A1Y5IDK1_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IDK1_OSTTA)

HSP 1 Score: 144 bits (362), Expect = 7.590e-36
Identity = 81/193 (41.97%), Postives = 110/193 (56.99%), Query Frame = 1 
Query:   64 RMTSS*LWAHPLVRPELGCLVIARGDMFAQQQQYFYKAVALVIQHGDDGTVALILNRPTTFTMGDVCTGGLQPVPGMEDNVLYMGGHVTGARDDGLDVVNLMHGREDVPG-MEVLKGLRLGGLQEALALVAK--GEAQPEEFKFFSRYSGWGPGQLEAEVLSGAWELAACDLESILQSHNHPDQPGHFWSEIM 633
            R+  +  WAH +  PE GCL++A    F   QQYF++AV LV++H ++G++ +ILNRPT + MG V     +P     +N LY GG V      G   V+ +HGREDV G +EVL G+ LGG + A  LV +      P+EFKFF+RY GW PGQLE+E   G W   A   E  L+      +P   W EI+
Sbjct:  106 RLAQAKPWAHVIAAPEKGCLLVAADQEFRMSQQYFHQAVILVLEHHENGSMGIILNRPTQYNMGYVSG---EPSGPFAENALYFGGDV------GDGTVSFLHGREDVKGSVEVLPGVYLGGYESACELVQQDGSTCHPDEFKFFARYCGWAPGQLESECERGVWYPIAAAKELSLKQVIQLPKP--LWREIL 287
[Close]
BLAST of mRNA_P-littoralis_Contig709.4.2 vs. uniprot
Match: A0A5J4XP12_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XP12_9CHLO)

HSP 1 Score: 141 bits (356), Expect = 7.700e-35
Identity = 76/195 (38.97%), Postives = 112/195 (57.44%), Query Frame = 1 
Query:   55 QVRRMTSS*LWAHPLVRPELGCLVIARGDMFAQQQQYFYKAVALVIQHGDDGTVALILNRPTTFTMGDVCTGGLQPVPGMEDNVLYMGGHVTGARDDGLDVVNLMHGREDVPG-MEVLKGLRLGGLQEALALVAKGEAQPEEFKFFSRYSGWGPGQLEAEVLSGAWELAACDLESILQSHNHPDQPGH-FWSEIM 633
            +V   T++  WAH + +PE GCL++A   MF   Q YF +AV  + +H D  +   ILN+PT   +G +  G     P   DNVLY+GG V      G D ++ +HG  D+ G +EV++G+ +GG +EA   +  G  Q ++F++F+RY+GWGPGQLEAE ++G W  AA     IL   NH +  G   W  I+
Sbjct:  126 EVSTSTANGRWAHDVGKPEKGCLLLAHPLMFGSSQGYFSQAVIFLFEHDDTASAGFILNKPTEHVLGKL-VGADNLCPEFADNVLYLGGDV------GHDTMHFLHGYSDIQGAVEVVQGVFMGGFEEARFGIRTGSKQSDQFRWFNRYAGWGPGQLEAECVAGVWFTAAASSHVIL---NHQNLSGREMWHTIL 310
[Close]
BLAST of mRNA_P-littoralis_Contig709.4.2 vs. uniprot
Match: C1MN92_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MN92_MICPC)

HSP 1 Score: 140 bits (354), Expect = 2.680e-34
Identity = 79/184 (42.93%), Postives = 105/184 (57.07%), Query Frame = 1 
Query:   85 WAHPLVRPELGCLVIARGDMFAQQQQYFYKAVALVIQHGDDGTVALILNRPTTFTMGDVCTGGLQPVPGMEDNVLYMGGHVTGARDDGLDVVNLMHGREDVPG-MEVLKGLRLGGLQEALALVAKGEAQPEEFKFFSRYSGWGPGQLEAEVLSGAWELAACDLESILQSHNHPDQPGHFWSEIM 633
            WAH +  PE GCL++A  + F   QQYF++AV LV++H + G++ +ILNRPT + MG V  GG    P   +N LY GG V      G   V+ +HG  +V G  EVL G+ LGG   A  LV  G  +P +FKFF+RY GW PGQLE+E   G W   AC  +  L+      +P   W E+M
Sbjct:  171 WAHVIGAPEKGCLLLASEEEFKLGQQYFHQAVILVLEHHEKGSMGVILNRPTQYNMGYV--GGDDSSP-FANNQLYFGGDV------GDGTVSFLHGSSEVAGGSEVLPGVYLGGYDSACELVKDGTLKPTDFKFFARYCGWAPGQLESECERGVWYPVACSRQLALKQVIQLPKP--LWREVM 343
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig709.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA69_9PHAE1.900e-12186.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWE5_ECTSI5.150e-6882.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZEY4_9STRA1.750e-6556.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YX41_9STRA4.240e-6456.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDX0_9STRA4.600e-3957.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0PMA6_9CHLO2.620e-3643.92Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A7S0D198_MICPS4.770e-3641.03Hypothetical protein n=2 Tax=Micromonas pusilla Ta... [more]
A0A1Y5IDK1_OSTTA7.590e-3641.97Uncharacterized protein n=2 Tax=Ostreococcus tauri... [more]
A0A5J4XP12_9CHLO7.700e-3538.97Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
C1MN92_MICPC2.680e-3442.93Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig709contigP-littoralis_Contig709:34663..43452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog70448.Q00XE1
PFAMsDUF179
Model size1296
Max annot lvl3041|Chlorophyta
KEGG koko:K07735
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.82e-31
EggNOG OGs28K0C@1|root,2QSEU@2759|Eukaryota,37IPD@33090|Viridiplantae,34PA2@3041|Chlorophyta
DescriptionUncharacterized ACR, COG1678
Cds size549
COG categoryS
BRITEko00000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig709.4.2prot_P-littoralis_Contig709.4.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig709 35269..38151 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791477.3242607-UTR-P-littoralis_Contig709:34662..352681680791477.3242607-UTR-P-littoralis_Contig709:34662..35268Pylaiella littoralis U1_48UTRP-littoralis_Contig709 34663..35268 -
1680791477.3833585-UTR-P-littoralis_Contig709:38151..382091680791477.3833585-UTR-P-littoralis_Contig709:38151..38209Pylaiella littoralis U1_48UTRP-littoralis_Contig709 38152..38209 -
1680791477.3934565-UTR-P-littoralis_Contig709:43369..434521680791477.3934565-UTR-P-littoralis_Contig709:43369..43452Pylaiella littoralis U1_48UTRP-littoralis_Contig709 43370..43452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791477.3369808-CDS-P-littoralis_Contig709:35268..354751680791477.3369808-CDS-P-littoralis_Contig709:35268..35475Pylaiella littoralis U1_48CDSP-littoralis_Contig709 35269..35475 -
1680791477.3515067-CDS-P-littoralis_Contig709:36264..363481680791477.3515067-CDS-P-littoralis_Contig709:36264..36348Pylaiella littoralis U1_48CDSP-littoralis_Contig709 36265..36348 -
1680791477.3620245-CDS-P-littoralis_Contig709:36793..368891680791477.3620245-CDS-P-littoralis_Contig709:36793..36889Pylaiella littoralis U1_48CDSP-littoralis_Contig709 36794..36889 -
1680791477.3729625-CDS-P-littoralis_Contig709:37989..381511680791477.3729625-CDS-P-littoralis_Contig709:37989..38151Pylaiella littoralis U1_48CDSP-littoralis_Contig709 37990..38151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig709.4.2

>prot_P-littoralis_Contig709.4.2 ID=prot_P-littoralis_Contig709.4.2|Name=mRNA_P-littoralis_Contig709.4.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=183bp
MFAQQQQYFYKAVALVIQHGDDGTVALILNRPTTFTMGDVCTGGLQPVPG
MEDNVLYMGGHVTGARDDGLDVVNLMHGREDVPGMEVLKGLRLGGLQEAL
ALVAKGEAQPEEFKFFSRYSGWGPGQLEAEVLSGAWELAACDLESILQSH
NHPDQPGHFWSEIMWRLRRHRGGSSRAEAPDT*
back to top

mRNA from alignment at P-littoralis_Contig709:34663..43452-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig709.4.2 ID=mRNA_P-littoralis_Contig709.4.2|Name=mRNA_P-littoralis_Contig709.4.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8790bp|location=Sequence derived from alignment at P-littoralis_Contig709:34663..43452- (Pylaiella littoralis U1_48)
CCTGTTTCTCAAGCGGAGGGAGCGGCGGCAGGAGCAGCAGCGGTTCACAG
GGAGCAAGTTCGACGAATGACGTCTTCATGACTGTGAGTTTCCGATTTCC
GATCTCTCACCTTGTGCATGAAAGTATCCAGTCCCCCCCCCATCAAAACA
AAGATAATCATCAAGAAAAATACTCCGTAGTTACTTTAAGGCCCAATCTT
ATGGTAGATGGGCAGCTGGAATTTCTCGACTTGGAAAAGCGTTTTCCAAG
CCTGATATTCCAAGTCGGACAATCAGACTGGTGCCAACTTTATGGGAGAA
CTGGAAAATTTGGGCAGCGATTGGAAATCAGATGGGGTTGCAGGACGGAC
GGCAGGCGGTTTATTTTCGTTAAACTGCTGCTGATGGCGCAGAGCGGCGA
GCGTTATCGCCAGCACGGCCAGGATCGCACGTCGCCTTGGTACCTGCACC
TGGCCAGTGTGTTTGGGTGCTCGGTTGTTTGTATTTGTGCTTGTTGTGTG
CTGTGAACCACTGCGGCGGAACCTCGTGGCTGCGCGCGCGCGACGGATTC
CAGGCCTGGAATCCAGCTCATTTGGCCTGGAATCCGAGGGCAGATTCCAG
GCGAGTCGCCTGGAATCCGGAGAACTGGAAAATATTTTCCAGTTTCGGCC
GAAAACAACCCCCATAAGATAGAAATATTTTCCAGGCCTGGAATTTGGAT
TCCAGTTCCTCATGTGAAACCCTTGGATTCCAGTTTTCGGCTCTACCATA
AGAGTGGGCCTAAGGCTGGATCTTATGGTCCACGATGTTGGGCCAAGGAT
TTTTAAGATCCTAGTCAAAGTCACCTTATGGACACGGATGTTGGCGATTT
AGAATCTTTAAAATTCTTGGACCAACATCGTGGACCATTTTCCCAGGATG
TTGGGCCAAACATCCGTCGCTCGGCATCCTAGAATTTTTCGCCAAGGATC
TTTTTTAATGTCTTTTTAAACCCACAAAGCGGGGTCACGCCGCATCCCCG
AGCTGTTCTATTGTGAGCGCAGACAAGCTCGGGCGCACCAACAACAGCAC
CTACCACACCACAAACCCACACCCGCCGCACGACGGAGCCTGCTTCGAAC
GTAGGAGGCCGCGAACGACATGCGGAGCTCGTCGCTCTTCTGTTCTCAGC
AATGTTGTGGAGACTTTCGATTGATATTTTTCATCCTGCTGCTGTGGACT
ATACTGCTGCTGCTGCTGTGTACCTTTCCGCGGACGTACGTAGTACGTGG
TGACCTCTAATTCAACGATTCCGGCATGGACGCCTGCTACTACTGCTGTA
CAGCAGCAGCAGTCTTCTGTTGTGCGTGGAAGCACCAGTATGTGTGTGTG
GCGTTCCGTGCTACGGTGGTCGTGAGGAGAACGAGTGAGTGTGTCTTGTG
CTGCTGTGCGGGGCCCTCCTCCTCCGCTGTATTATTATGCGCAAAGCCCG
TGTCCCTGTTGCAGTTGCACGCTTCTTCTCGAAACTATACAATAAAAAAT
AGGCCTTGCCAAAATCCGTGCCCACAATAATCCGTGTTTCCCATAATATG
GGCTGTGTGTTTTTGCGGCCCACGGATGTTGCCCTCATATGTTTAAAGAT
CCTTGGGCCAACATCCGTGGACCATAAGATCCAGCCTAAAGGAGTTACTT
GTTTCCCGCTGTAGCTCCCGGCCTGCTAAACGTTTTGGGTAGGGGCCCCG
TGGCCTGCGGCCGGCCTGAAGGTCGGTCTTTCCTTCTCGCACATATGATC
ATAGGTACAGGTAGGCACATCATTGGTACTGGTAGCGGCAGCAGCAGCAG
CAGCAGCAGCAGTAGTAGTATTCTAGCAACCAATCGCATGTATCTACATA
TTATATATCTACATACATGATGCTTGCTGCTGTTGTCGCTGGGTTTTGAC
CAAACAAGATGATAAGATGCCATCGGGTGTATCATACATAAAGGTATGAC
TCTCTACTACTCCTGATCTTCTTGCTTGTGTCATACCAACAAGGGAGGAG
GTATCATATGGCATGTGATGTACTGCTGTACAGCAGCGGCAGTTGTAGCA
GTAGTTGTAGGACGCTGCTATAATAATGCTGGTGTGGTGTTGCACTCCAG
AAAAATATTTTACACTGCGAAGTGTATATACTGTCAGACGAGATGATTTC
AGATTTCGACATGCCGGGGATTTACTATGTTGACTGAGTCTTGCTGGGCA
CCCTCACACCCCTTGACCACACACACAGTGTTTGTCCTCTTGCCCGTATC
TGAGTGTAGCCGGATGCTGCTCAACTCCCAAGGTGATGGGGTTCGGGATT
TTTTTGTTTATATCCCCGTCCCGAAGAGATCGGCCAAACAAAAAAATAAA
ATAAATGATTAATAATGTGTTATCAATCGCCTAGAAGTCACAGAAGGGTT
CAATAATACCCGCTGAGTAATACCAGCACAATCCGTGTGATGGACCGCCT
TCCTCACTCAGGCCGTTCTTGTGTGAGCTTTGCTTTTCCCTCTGGAAGGT
CGAGCCATGCCCATTCATTCGTGGTCCGCCACACAGGATGTGGCCGCCGC
CGATTGCGCAGCTGCTGCGCAAACGTGGCGTGCATCGTCATGTTTGGAGG
CGCTCCTTGGCTGAGTTAAGCCCCACCTCGGCTTGATCAGTCGTGAGGGG
TTTGGGGCTAGGGTTGGGATGAGCTGGGCTGGGATGGGTTGTGTGCTTTC
GGTCGCGCTCGCGCTGAAGTTTCTGGGATTTTTTTTCTGGCACCCTGGGA
AGACCAACGAACAGAGTGTTAACAAACGTCGCTTGCCGTCGATCCGCAGG
AACGACGTGAGATCGGGTGAGATGTTCCGTGTGTGTTTTGTACCCTCTGG
AAAAAAATCTGGCGGTTCGGTCGTTGGTTGGAATCTCGGTCGGTGAAGCC
ACACGGACGACACGGACTGGGACTTCGTGTTCCTCGCATCATTCAATTGA
AGCCTATCGTAGCAGTGGAAAGTGAGTAAATTTTGTTGAGCAAAAGAAAA
AATCAACTCAAAAAAAATCGACGAATATAGGTTCGGCCGGGCCGGTCTCT
CCTCGCGATGAAAGTTGCGGCAAGCTCCGGAGACGGACGGTACGTGGAGG
GAAAAATAAAACAAAACTTCTGTCTGTGTGTGACCTTGTTCCTGTCTGCG
ATGACCCCCGCTGAGCGCCCGCATGTGTCCCGAACGGTGTAGACTAGGCG
TCCACACAAGACACCCTGGTATTTGAGCTCTCGGTAACATGTGAATTATG
GTAACGTTTTGTGCTTATTGTAGCAGCAGCAGCAGCAGGCAGAGGCATCC
GATGGCTGCCACTAGTTGTTCGGTTTGCGGCACACACGCGGCTGAAGCAT
TCCTCGGGTCGATGAGCAGTAAATTGTACTTTGAAGTACGAAGTACGAAG
TAAAAATCTTGCCGAATACCTGGTACTTTTTATCTCTGCTTTTGCTGCAC
ACAGCAGCGAAGTGTCGAGTACGTACGAGGCGGGAAACAAGAAGCGTGTT
GTGCAGCATTTCCACGGCAGTCCATGCTGCTGTACTACAAGTACAGCACG
ACCCAGCAAAAAATGTAGGGTTTCCCGTAGTAGGGGGGGAGGGAAATGAA
GAAAGGCGTGGTCCCTTGTACTCCTGCGGAATGTACAATAACTCGAAAAT
GAAGAGAGGCGTGTGTATGTACTTCGAAGTATATGTCTATGTATGTGTGT
GTGTGAATAGCTATCATGTGTTCCACCTTCGTGCACTTGCATCAATCCAG
CCCAACGCTGCTGCCGCCGCCGCAGTACGCCGCCACTCACTCAATCCGAT
CTAGTTCCCGCAATCATCAAGAAACAGCACCAACCACATCATTCATGTCC
TTCCGGCACAAAACAAACTTACCGTAGTCACACGGGAGGGGCAGAATGCG
AGACCGAGTAAACCGTAGACAAGCCCGCCGGCAACGCCCCTCCTTGTTGT
GCAGGCCGGACACCGGTGGCGGAAAGATAGGCGGCGCTCCTCCTTCGGTG
TGACGATTCTCCGAGCGGAAGCAGCACCAGCGCCAGCGCCAGCAGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGAGGAAGGGTTACCAGACGCCGAGAG
GGACGGCGCTAGCGGGGACAGCGACCAAACGTCCCCGGAGGGTTCCGTGT
CATCGGCGGGCAGAAATGACGAACCCGTTGGCGAAGAAAGCTTTACCGAT
GATAATGGTGATGATGGTGATGGTGATGGTGGTGGTGATGGTGATGATGA
TGACGATGGAGGCGTTTTAGAGGAGAGGGCGAAGGGGGATGCGGACAACA
TGGAGCTGAGGGATTTTCGGGCTCGGCTCATGTCTAAGGGTTTGGACGGG
TGGGGCGCGGGGGAGGAGGCGGAAGGGGGGGCGGGGAGGGGAGGCGTCGG
CAGACGTAGCGGTGGACGAGGGGGTGCGACGACCAGCGAAAGGTGCGGCG
GAGCAGCAGCGCAGCAGCGCGGCAGCGCAGCAGTGAAGCCGTGCAGCAGT
AGGGGTGTCCTTCTGTTTCTGTTGTTTGCGGCCATGCGCAGGCAGTCAGT
ATCGTGCACGCGTTGATCGAGGCGGAAGGGTGACCCCTCTAGTATCCCGG
CGCGGCGCAAGAAAAAAAATAAGAAGTTGAAAGACAGCAAGGGGGAGGAG
ACGCGCCGCATGCATATGATACCTACGTACATAATACGAACCATATATAC
ATACGTGTTCGAAGTACATAAATACATGCATATGATATAATAAGCAAACG
TGCGTGGAGCGTGCTTGGCGTGTCATTGCGTGCCGTGACGCGTCGAGTTT
CCAGCATAAATCAGTCAGCAGGCGTGGTTCTGTCGGCGGTGATAAGACGT
TCGAGGAAGCAATATCATGTCGGAAGAATTACGCTGCTCGTTCTTCTTTT
TTCGTTCTTTTTTTTTGTTCATGACTTGGAGGGGGGAAGCTTTTGGAAAA
CCCGTACCTGGTGTTATACGAGCACAAGTACACACTTTTCACATCCACAT
CTCGTTGATCGGTGAAGTCTTCGCACGACTATCGTATGACACCAACCAGC
ACGGGACGTGTGCAAAAGAATTGGGCAGGTAAAAAAACACAATCAACAAA
AGCATGACCAGCCCCTCCCTCGCCCCCCTTGTTTCTCTCTCCCACGGTCC
GACCCGAAATCGACATCGAAATCGACATCGAATCGAAATTGAAATCTAAA
TCTAAATCTAAATCAAAAACGAAACGCCGCGTGGAATAAAAAGGTGGGCA
CATCCACTGGTGCGCCCGGAGCTGGGGTGTCTGGTGATCGCGAGGGGGGA
TATGTTCGCGCAGCAGCAGCAGTACTTCTACAAGGCCGTGGCCCTGGTGA
TTCAACACGGGGACGACGGGACTGTCGCCCTCATCCTCAACAGACCGACC
ACGTTCACGATGGGGGACGTTTGCACCGGGGGCTTGCAGCCCGTTCCGGG
AATGGAGGATAACGTGAGAAATAAATGTTTCCTGCCATGGTGCGTATCAA
ATGTACGTTCATGCAGCACACGCACGCTGAGAAACACTGCGCTGCTGACG
AGCTACCAGGACGTGGAGATGCTCATGCACCACACACACATTGACTAAAA
CTGCGCTGCTGACGAGCTACCAGTGCGTGTGTATATATGTTCACCCACCA
AACACGCTCCAACTACGACCACACCGCTGCTGGCTGGGCTTAGGGTGGAA
GCTTCTTTTTTATTTCGTGCGCGTGGGGTTCGGGCAGCACGAGCTTGCGG
CGCAACCCTATTTTCTTCTCTTTTCATGCTCTTTGTGCGTGCGTGGGAAT
GGTTCGAATTCACGGCGTTGTCCCGATTATTTGTAGCAAACACTTCCTCT
GGTGTCAGAGCCAAAAAGCCGGAGATCATTGCCGCCACTGCGGTTTGACA
TCATGCACAGCGGAGCGGGTCCGCTTTCGGGAGGCACGAGCACGCGCGAC
CCCCCTTTCTTATTTTTTCATGCTATGCATGCATGCATGCATGATTGCAC
GCGTGGGAATGTGGCTTTGATTCATTAGGGTGTGGAAAAGGTCAACTTCA
ATGCGCCCCTATCTTGTGGTGACAAATCTACCTCTTGTGTCAGGACCAAA
AAAGCGTAAGTGTTGCCGCCGCTGTTTATTATCGAAGCGGAGTGTATCTG
GTGAGAGATGCAGCACAGCAGAGCTCCTCCACCCACCAACCCTTGTATTA
GACAAAGCTTGATTTTTTTTTGAAGCATTTTGTTTTTTATATATTACTTC
TTACTAAGTACGAAGTCTGGAGTATTATTTATAATTATTTTATTTACTTC
AATTGTTTTACTACGGAGTATTATTTTTATTTTTATTCATTTTTGTATAA
TTAGTATTATTTTCTTTTTATGCTTCGTTTATGGAGAAGCATGCCTGTAT
GCACGTTCTGGTTGCTTGCTTGCTCCTTGACGCTGTTCGTACATCATATG
TACGAGGGTACAGCTTCTGCCGTCCACTGCCTACCACCGCCGTCCGTGCT
CATCGCCAACTGCATATAAGTATCATATACGAAGTATACAACACAACTTA
TCTGTCCGACCAGGTGCTGTACATGGGGGGCCACGTGACTGGCGCCCGGG
ACGACGGGCTCGATGTGGTAAATCTCATGCATGGGAGGGAGGACGTCCCA
GGCATGGAGGCGAGTTACCGTTTGCGAGTGCTCCCCTTTGGGGACGATTC
GTGTCTGTGCGGTGGAGGCGATTGTATGTCCATTAGGGAGGAGGGTGAGC
TGAGGGGGCTTCTCTACGTTGTCCCTGGCTCTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTCGTTGTTGCTGTTGTTATTGTTGTCGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTTGTTG
CTGGTTTGAAAAGTCTCGTCCAAATGGATGTACCGGTATTTCCATGTAAA
TCCAACTTAGGCTGAGATCACTTTTTGTTCGTTGTTATTGTTGTCGCTTC
TGCTGCGGCTGCTGCTGCGGCTGCTCCTTGGGTCGTGTGTCTTTGTCATT
GTTTCCATACTCGTTCATGATTCCCGTGCTGTTCTTGCTGCCCGTCGAAA
GCAGGTTCTGAAGGGTCTCCGTCTGGGAGGACTGCAGGAGGCGCTGGCCC
TGGTCGCCAAGGGAGAGGCACAACCCGAGGAGTTCAAGGTGTGTCGGCGT
AGGCGGTAACGGGCGACGCTGTCGACGCTGTAGAGCAACATGTTACCCCT
TTCTTTCAAGCGCCAAACCTGCATATGTTTACAGTATTCCTCGCCCGCCC
CCTCGGCATTTGGCCCAATTTTTTTTCTTTTTTCCAGCACGAAACCTACC
AGTACCCATGTAACTCAAAACCTTTTATATTTCCTCGGCGTTTACGTCTC
GTGTCCTTGCCCCCTCTGTTCCCCCCACCCATTCCAGATCGTCGGCCCCC
CTGACCCCACGTGTTATTGATGGGGTCTACGGGAAAACGCCAGCACAGGC
ATCCGTGATGCTGAGCGCTGAACTCGGCACCCCCCCCCCTCCTCTCCGAG
TTCGCATCCTCACGTCGCCCCCTCCCCCGCCTCTCCGGAGTTGCGTCCTT
GCGTCATTCTCAAGTGGATCAAGCTCCTTACCTGCTCTACCCTTACCTCC
GCTGCACACGCTCCTTTTGATTTTACCCAGTTCTTCTCGCGCAAACCCCC
TACTCCTGCTGTGTTAATGGTTTATCGTAGATATAGCTCCTTGCCCTCGC
TTGCCCGACCCCCCCCCCCCCTCTCTCACTTCCCCCTCCATGTACATACA
ATTTTTTACTTTCCAGTTTTCGCCGCGTAACCCCGCTGCTACGGTGTTCT
CCGAGTAGTTAGCTATGTGTGATGGTCTCTCGTGGATATAGCTCCTTTCC
CTCCCTTGCCCAACCCCCCCCCCCCCCCTCCCTCTCTTCCCCTTACATGC
ACTACAAAACCTTTTTCATTTTTCCAGTTTTTCTCGCGGTATTCGGGATG
GGGTCCTGGGCAACTGGAGGCGGAGGTGCTGAGTGGGGCCTGGGAACTAG
CGGCGTGCGACTTGGAAAGCATCTTGCAGAGCCACAACCACCCGGACCAG
CCGGGCCACTTCTGGTCCGAGATCATGTGGCGATTACGGCGGCATCGCGG
CGGAAGTAGCAGAGCAGAAGCGCCTGACACGTGAACAAGAGGCGTGCCAG
GCTGTAGTTTCGAGTTGCTGAATACAGCAGTGAGTACACGTCCCCCCGCA
GTCTGTGTTCGTCGTTTGCCCTTTGATATTGGACAACGCACGATGGCCAC
GACAGGCTACCATATACTCGCACACACCGAATACTCAACAGAAGCAGAGG
TGCACACAGCAGTACAACACCTGCCTGAACGTGCTCGAGAAACCAACACC
ACAAGCCGACTCGCGTTGTACGCACAACACACACCCAACGGCAACAGCAG
CGGTGGGGCTTGTTGGTTCTGCTCCGGGTGGGTCGTTGCTCTGGCTGTCT
GCTGAAGTCTCAGTCTTGTGTGTCCGAGGTATAAGGCAAGAAGAGGTCGG
AGATGCATATTTTTCCCGTGCGAATCTACCAACAACTTGCATGCTTTTCG
TGCGAATCTACTAACGAATCACAATGTCAACCTCCAAAGGTGTAAAGGAA
TGACGGCGGCGGCCGGCGCTTCCACCAAGGTTGAGGCTTCCATCCACTTC
CAAACCTACATCACTCCACGAAAGGCTTTCGGAGAGTATTGCCAACGATC
ATCCCAGTGCTACCCACAGTTCGGCACCACTGGATCCCTA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig709:34663..43452-

>mRNA_P-littoralis_Contig709.4.2 ID=mRNA_P-littoralis_Contig709.4.2|Name=mRNA_P-littoralis_Contig709.4.2|organism=Pylaiella littoralis U1_48|type=CDS|length=549bp|location=Sequence derived from alignment at P-littoralis_Contig709:34663..43452- (Pylaiella littoralis U1_48)
ATGTTCGCGCAGCAGCAGCAGTACTTCTACAAGGCCGTGGCCCTGGTGAT
TCAACACGGGGACGACGGGACTGTCGCCCTCATCCTCAACAGACCGACCA
CGTTCACGATGGGGGACGTTTGCACCGGGGGCTTGCAGCCCGTTCCGGGA
ATGGAGGATAACGTGCTGTACATGGGGGGCCACGTGACTGGCGCCCGGGA
CGACGGGCTCGATGTGGTAAATCTCATGCATGGGAGGGAGGACGTCCCAG
GCATGGAGGTTCTGAAGGGTCTCCGTCTGGGAGGACTGCAGGAGGCGCTG
GCCCTGGTCGCCAAGGGAGAGGCACAACCCGAGGAGTTCAAGTTTTTCTC
GCGGTATTCGGGATGGGGTCCTGGGCAACTGGAGGCGGAGGTGCTGAGTG
GGGCCTGGGAACTAGCGGCGTGCGACTTGGAAAGCATCTTGCAGAGCCAC
AACCACCCGGACCAGCCGGGCCACTTCTGGTCCGAGATCATGTGGCGATT
ACGGCGGCATCGCGGCGGAAGTAGCAGAGCAGAAGCGCCTGACACGTGA
back to top