mRNA_P-littoralis_Contig709.4.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig709.4.3
Unique NamemRNA_P-littoralis_Contig709.4.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig709.4.3 vs. uniprot
Match: D7FWE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE6_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.060e-6
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:  388 GVLEERAKGDADNMELRDFRARLMSKGLDGWG 483
            GV E  A G A++MELRDFRARLMSKGLDGWG
Sbjct:   53 GVSESGAAGGAESMELRDFRARLMSKGLDGWG 84
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BLAST of mRNA_P-littoralis_Contig709.4.3 vs. uniprot
Match: A0A6H5JA69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA69_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 4.340e-5
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:  388 GVLEERAKGDADNMELRDFRARLMSKGLDGWG 483
            GV E  A   A++MELRDFRARLMSKGLDGWG
Sbjct:  103 GVSESGAAEGAESMELRDFRARLMSKGLDGWG 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig709.4.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWE6_ECTSI1.060e-678.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA69_9PHAE4.340e-575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig709contigP-littoralis_Contig709:39095..43450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size487
Hectar predicted targeting categoryother localisation
Exons2
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791477.0220795-CDS-P-littoralis_Contig709:39096..394981680791477.0220795-CDS-P-littoralis_Contig709:39096..39498Pylaiella littoralis U1_48CDSP-littoralis_Contig709 39097..39498 -
1680791477.0334797-CDS-P-littoralis_Contig709:43369..434501680791477.0334797-CDS-P-littoralis_Contig709:43369..43450Pylaiella littoralis U1_48CDSP-littoralis_Contig709 43370..43450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig709.4.3prot_P-littoralis_Contig709.4.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig709 39097..43450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig709.4.3

>prot_P-littoralis_Contig709.4.3 ID=prot_P-littoralis_Contig709.4.3|Name=mRNA_P-littoralis_Contig709.4.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=161bp
CFSSGGSGGRSSSGSQGASSTNDVFMTAGHRWRKDRRRSSFGVTILRAEA
APAPAPAGGGGGGGGGGEEGLPDAERDGASGDSDQTSPEGSVSSAGRNDE
PVGEESFTDDNGDDGDGDGGGDGDDDDDGGVLEERAKGDADNMELRDFRA
RLMSKGLDGWG
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mRNA from alignment at P-littoralis_Contig709:39095..43450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig709.4.3 ID=mRNA_P-littoralis_Contig709.4.3|Name=mRNA_P-littoralis_Contig709.4.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4356bp|location=Sequence derived from alignment at P-littoralis_Contig709:39095..43450- (Pylaiella littoralis U1_48)
TGTTTCTCAAGCGGAGGGAGCGGCGGCAGGAGCAGCAGCGGTTCACAGGG
AGCAAGTTCGACGAATGACGTCTTCATGACTGTGAGTTTCCGATTTCCGA
TCTCTCACCTTGTGCATGAAAGTATCCAGTCCCCCCCCCATCAAAACAAA
GATAATCATCAAGAAAAATACTCCGTAGTTACTTTAAGGCCCAATCTTAT
GGTAGATGGGCAGCTGGAATTTCTCGACTTGGAAAAGCGTTTTCCAAGCC
TGATATTCCAAGTCGGACAATCAGACTGGTGCCAACTTTATGGGAGAACT
GGAAAATTTGGGCAGCGATTGGAAATCAGATGGGGTTGCAGGACGGACGG
CAGGCGGTTTATTTTCGTTAAACTGCTGCTGATGGCGCAGAGCGGCGAGC
GTTATCGCCAGCACGGCCAGGATCGCACGTCGCCTTGGTACCTGCACCTG
GCCAGTGTGTTTGGGTGCTCGGTTGTTTGTATTTGTGCTTGTTGTGTGCT
GTGAACCACTGCGGCGGAACCTCGTGGCTGCGCGCGCGCGACGGATTCCA
GGCCTGGAATCCAGCTCATTTGGCCTGGAATCCGAGGGCAGATTCCAGGC
GAGTCGCCTGGAATCCGGAGAACTGGAAAATATTTTCCAGTTTCGGCCGA
AAACAACCCCCATAAGATAGAAATATTTTCCAGGCCTGGAATTTGGATTC
CAGTTCCTCATGTGAAACCCTTGGATTCCAGTTTTCGGCTCTACCATAAG
AGTGGGCCTAAGGCTGGATCTTATGGTCCACGATGTTGGGCCAAGGATTT
TTAAGATCCTAGTCAAAGTCACCTTATGGACACGGATGTTGGCGATTTAG
AATCTTTAAAATTCTTGGACCAACATCGTGGACCATTTTCCCAGGATGTT
GGGCCAAACATCCGTCGCTCGGCATCCTAGAATTTTTCGCCAAGGATCTT
TTTTAATGTCTTTTTAAACCCACAAAGCGGGGTCACGCCGCATCCCCGAG
CTGTTCTATTGTGAGCGCAGACAAGCTCGGGCGCACCAACAACAGCACCT
ACCACACCACAAACCCACACCCGCCGCACGACGGAGCCTGCTTCGAACGT
AGGAGGCCGCGAACGACATGCGGAGCTCGTCGCTCTTCTGTTCTCAGCAA
TGTTGTGGAGACTTTCGATTGATATTTTTCATCCTGCTGCTGTGGACTAT
ACTGCTGCTGCTGCTGTGTACCTTTCCGCGGACGTACGTAGTACGTGGTG
ACCTCTAATTCAACGATTCCGGCATGGACGCCTGCTACTACTGCTGTACA
GCAGCAGCAGTCTTCTGTTGTGCGTGGAAGCACCAGTATGTGTGTGTGGC
GTTCCGTGCTACGGTGGTCGTGAGGAGAACGAGTGAGTGTGTCTTGTGCT
GCTGTGCGGGGCCCTCCTCCTCCGCTGTATTATTATGCGCAAAGCCCGTG
TCCCTGTTGCAGTTGCACGCTTCTTCTCGAAACTATACAATAAAAAATAG
GCCTTGCCAAAATCCGTGCCCACAATAATCCGTGTTTCCCATAATATGGG
CTGTGTGTTTTTGCGGCCCACGGATGTTGCCCTCATATGTTTAAAGATCC
TTGGGCCAACATCCGTGGACCATAAGATCCAGCCTAAAGGAGTTACTTGT
TTCCCGCTGTAGCTCCCGGCCTGCTAAACGTTTTGGGTAGGGGCCCCGTG
GCCTGCGGCCGGCCTGAAGGTCGGTCTTTCCTTCTCGCACATATGATCAT
AGGTACAGGTAGGCACATCATTGGTACTGGTAGCGGCAGCAGCAGCAGCA
GCAGCAGCAGTAGTAGTATTCTAGCAACCAATCGCATGTATCTACATATT
ATATATCTACATACATGATGCTTGCTGCTGTTGTCGCTGGGTTTTGACCA
AACAAGATGATAAGATGCCATCGGGTGTATCATACATAAAGGTATGACTC
TCTACTACTCCTGATCTTCTTGCTTGTGTCATACCAACAAGGGAGGAGGT
ATCATATGGCATGTGATGTACTGCTGTACAGCAGCGGCAGTTGTAGCAGT
AGTTGTAGGACGCTGCTATAATAATGCTGGTGTGGTGTTGCACTCCAGAA
AAATATTTTACACTGCGAAGTGTATATACTGTCAGACGAGATGATTTCAG
ATTTCGACATGCCGGGGATTTACTATGTTGACTGAGTCTTGCTGGGCACC
CTCACACCCCTTGACCACACACACAGTGTTTGTCCTCTTGCCCGTATCTG
AGTGTAGCCGGATGCTGCTCAACTCCCAAGGTGATGGGGTTCGGGATTTT
TTTGTTTATATCCCCGTCCCGAAGAGATCGGCCAAACAAAAAAATAAAAT
AAATGATTAATAATGTGTTATCAATCGCCTAGAAGTCACAGAAGGGTTCA
ATAATACCCGCTGAGTAATACCAGCACAATCCGTGTGATGGACCGCCTTC
CTCACTCAGGCCGTTCTTGTGTGAGCTTTGCTTTTCCCTCTGGAAGGTCG
AGCCATGCCCATTCATTCGTGGTCCGCCACACAGGATGTGGCCGCCGCCG
ATTGCGCAGCTGCTGCGCAAACGTGGCGTGCATCGTCATGTTTGGAGGCG
CTCCTTGGCTGAGTTAAGCCCCACCTCGGCTTGATCAGTCGTGAGGGGTT
TGGGGCTAGGGTTGGGATGAGCTGGGCTGGGATGGGTTGTGTGCTTTCGG
TCGCGCTCGCGCTGAAGTTTCTGGGATTTTTTTTCTGGCACCCTGGGAAG
ACCAACGAACAGAGTGTTAACAAACGTCGCTTGCCGTCGATCCGCAGGAA
CGACGTGAGATCGGGTGAGATGTTCCGTGTGTGTTTTGTACCCTCTGGAA
AAAAATCTGGCGGTTCGGTCGTTGGTTGGAATCTCGGTCGGTGAAGCCAC
ACGGACGACACGGACTGGGACTTCGTGTTCCTCGCATCATTCAATTGAAG
CCTATCGTAGCAGTGGAAAGTGAGTAAATTTTGTTGAGCAAAAGAAAAAA
TCAACTCAAAAAAAATCGACGAATATAGGTTCGGCCGGGCCGGTCTCTCC
TCGCGATGAAAGTTGCGGCAAGCTCCGGAGACGGACGGTACGTGGAGGGA
AAAATAAAACAAAACTTCTGTCTGTGTGTGACCTTGTTCCTGTCTGCGAT
GACCCCCGCTGAGCGCCCGCATGTGTCCCGAACGGTGTAGACTAGGCGTC
CACACAAGACACCCTGGTATTTGAGCTCTCGGTAACATGTGAATTATGGT
AACGTTTTGTGCTTATTGTAGCAGCAGCAGCAGCAGGCAGAGGCATCCGA
TGGCTGCCACTAGTTGTTCGGTTTGCGGCACACACGCGGCTGAAGCATTC
CTCGGGTCGATGAGCAGTAAATTGTACTTTGAAGTACGAAGTACGAAGTA
AAAATCTTGCCGAATACCTGGTACTTTTTATCTCTGCTTTTGCTGCACAC
AGCAGCGAAGTGTCGAGTACGTACGAGGCGGGAAACAAGAAGCGTGTTGT
GCAGCATTTCCACGGCAGTCCATGCTGCTGTACTACAAGTACAGCACGAC
CCAGCAAAAAATGTAGGGTTTCCCGTAGTAGGGGGGGAGGGAAATGAAGA
AAGGCGTGGTCCCTTGTACTCCTGCGGAATGTACAATAACTCGAAAATGA
AGAGAGGCGTGTGTATGTACTTCGAAGTATATGTCTATGTATGTGTGTGT
GTGAATAGCTATCATGTGTTCCACCTTCGTGCACTTGCATCAATCCAGCC
CAACGCTGCTGCCGCCGCCGCAGTACGCCGCCACTCACTCAATCCGATCT
AGTTCCCGCAATCATCAAGAAACAGCACCAACCACATCATTCATGTCCTT
CCGGCACAAAACAAACTTACCGTAGTCACACGGGAGGGGCAGAATGCGAG
ACCGAGTAAACCGTAGACAAGCCCGCCGGCAACGCCCCTCCTTGTTGTGC
AGGCCGGACACCGGTGGCGGAAAGATAGGCGGCGCTCCTCCTTCGGTGTG
ACGATTCTCCGAGCGGAAGCAGCACCAGCGCCAGCGCCAGCAGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGAGGAAGGGTTACCAGACGCCGAGAGGG
ACGGCGCTAGCGGGGACAGCGACCAAACGTCCCCGGAGGGTTCCGTGTCA
TCGGCGGGCAGAAATGACGAACCCGTTGGCGAAGAAAGCTTTACCGATGA
TAATGGTGATGATGGTGATGGTGATGGTGGTGGTGATGGTGATGATGATG
ACGATGGAGGCGTTTTAGAGGAGAGGGCGAAGGGGGATGCGGACAACATG
GAGCTGAGGGATTTTCGGGCTCGGCTCATGTCTAAGGGTTTGGACGGGTG
GGGCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig709:39095..43450-

>mRNA_P-littoralis_Contig709.4.3 ID=mRNA_P-littoralis_Contig709.4.3|Name=mRNA_P-littoralis_Contig709.4.3|organism=Pylaiella littoralis U1_48|type=CDS|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig709:39095..43450- (Pylaiella littoralis U1_48)
TGTTTCTCAAGCGGAGGGAGCGGCGGCAGGAGCAGCAGCGGTTCACAGGG
AGCAAGTTCGACGAATGACGTCTTCATGACTGCCGGACACCGGTGGCGGA
AAGATAGGCGGCGCTCCTCCTTCGGTGTGACGATTCTCCGAGCGGAAGCA
GCACCAGCGCCAGCGCCAGCAGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGAGGAAGGGTTACCAGACGCCGAGAGGGACGGCGCTAGCGGGGACAGCG
ACCAAACGTCCCCGGAGGGTTCCGTGTCATCGGCGGGCAGAAATGACGAA
CCCGTTGGCGAAGAAAGCTTTACCGATGATAATGGTGATGATGGTGATGG
TGATGGTGGTGGTGATGGTGATGATGATGACGATGGAGGCGTTTTAGAGG
AGAGGGCGAAGGGGGATGCGGACAACATGGAGCTGAGGGATTTTCGGGCT
CGGCTCATGTCTAAGGGTTTGGACGGGTGGGGC
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