mRNA_P-littoralis_Contig707.24.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig707.24.2
Unique NamemRNA_P-littoralis_Contig707.24.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig707.24.2 vs. uniprot
Match: D8LST1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST1_ECTSI)

HSP 1 Score: 440 bits (1131), Expect = 5.360e-153
Identity = 255/312 (81.73%), Postives = 279/312 (89.42%), Query Frame = 3 
Query:   39 RHGALHACARPASQSSIPCQALRAASSKXXXXXXXXXXXXXXXXXXXXARRPMFPVAEALDLVKSGAKAKFDETVEVALVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGEDAAAATAAGADIVGADDLLASVMEGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKVGSVTRDVGAAVKAAKGGQAHFRAGKNGVMHIGVGKVSFERSDLMENVRATMVAVSNLKPEVVKGKYISQVHFSSTMGKGIQVEVTSVDPSSPRFMYVDEGAEAAVKKALEAELVKAGVAQKAGEGGEEEGEGERASL 974
            RHG+LH+CARPA ++ IPCQALRAASSKXXXXXXXXXXXXX       AR P++P+AEALDLVK GAKA FDETVEVA+VLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKG+DA AATAAGADIVG +DL+ASVM+GNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAK+GSVTRDV AAV+AAKGGQA FRAGKNG +H+GVGKVSF RSDL+ENVRATMVA+SNLKPEV+KGKYISQVH SSTMGKG+ VEV +VDPSSPRFM+VDEGAEAAVKKALEAEL KA    K G+G  E+    RASL
Sbjct:    2 RHGSLHSCARPAQRAIIPCQALRAASSKXXXXXXXXXXXXXAQAAVA-ARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGDDADAATAAGADIVGTEDLVASVMKGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKLGSVTRDVEAAVRAAKGGQAQFRAGKNGALHMGVGKVSFARSDLIENVRATMVAISNLKPEVIKGKYISQVHLSSTMGKGVPVEVATVDPSSPRFMFVDEGAEAAVKKALEAELAKA---MKEGDGAGEQ----RASL 305
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BLAST of mRNA_P-littoralis_Contig707.24.2 vs. uniprot
Match: A0A067C8G8_SAPPC (Ribosomal protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8G8_SAPPC)

HSP 1 Score: 268 bits (684), Expect = 8.970e-86
Identity = 137/221 (61.99%), Postives = 168/221 (76.02%), Query Frame = 3 
Query:  186 RRPMFPVAEALDLVKSGAKAKFDETVEVALVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGEDAAAATAAGADIVGADDLLASVMEGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKVGSVTRDVGAAVKAAKGGQAHFRAGKNGVMHIGVGKVSFERSDLMENVRATMVAVSNLKPEVVKGKYISQVHFSSTMGKGIQVEVTSVDPSSPRFM 848
            ++P   +  AL   K  A  KFDETV++ + L VDPRK NQ+VRG V LP G+GKTVRVAVFAKGE A  A AAGA IVGA+DLLA +  G +DF+RC+ATP+MM++VGR ARVLGPRGLMPN K+G+VT+DV AA+ AAKGGQ  FRA K G++H GVGKVSF    L+EN+RA MVA+ + KPE  KGKYI  +H SSTMG GI++E   +DPSSP+FM
Sbjct:   41 KKPFLDLPTALANCKENAVRKFDETVDIVVELGVDPRKPNQSVRGVVTLPNGTGKTVRVAVFAKGEKAEEAKAAGATIVGAEDLLADIQAGKLDFDRCIATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVSAAISAAKGGQVEFRAEKKGIVHAGVGKVSFSDDALIENIRAFMVAIGDAKPEGAKGKYIKAMHLSSTMGPGIRLEARLLDPSSPQFM 261
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BLAST of mRNA_P-littoralis_Contig707.24.2 vs. uniprot
Match: A0A6G0WIL3_9STRA (Ribosomal protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIL3_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.800e-85
Identity = 138/221 (62.44%), Postives = 167/221 (75.57%), Query Frame = 3 
Query:  186 RRPMFPVAEALDLVKSGAKAKFDETVEVALVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGEDAAAATAAGADIVGADDLLASVMEGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKVGSVTRDVGAAVKAAKGGQAHFRAGKNGVMHIGVGKVSFERSDLMENVRATMVAVSNLKPEVVKGKYISQVHFSSTMGKGIQVEVTSVDPSSPRFM 848
            ++P+  + +AL L K  A  KFDETV++ + L VDPRK NQ+VRG V LP G+GK VRVAVFAKG+ A  A AAGA IVGA+DLLA +  G IDF+RCVATP+MM +VGR ARVLGPRGLMPN K+G+VT+DV AA++AAKGGQ  FRA K G++H GVGKVSF    L+EN+RA MVA+   KPE  KGKYI   H SSTMG GI++E   +DPSSP FM
Sbjct:   40 KKPLLSLPDALTLCKQHAVRKFDETVDIVVELGVDPRKPNQSVRGVVMLPNGTGKVVRVAVFAKGDKADEARAAGATIVGAEDLLADIQAGKIDFDRCVATPDMMGLVGRVARVLGPRGLMPNPKLGTVTQDVTAAIQAAKGGQVEFRAEKKGIVHAGVGKVSFSDEALVENIRAFMVAIGEAKPEGAKGKYIKACHLSSTMGPGIRLESRFLDPSSPHFM 260
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BLAST of mRNA_P-littoralis_Contig707.24.2 vs. uniprot
Match: A0A024UFR5_9STRA (Ribosomal protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024UFR5_9STRA)

HSP 1 Score: 266 bits (679), Expect = 5.460e-85
Identity = 137/221 (61.99%), Postives = 168/221 (76.02%), Query Frame = 3 
Query:  186 RRPMFPVAEALDLVKSGAKAKFDETVEVALVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGEDAAAATAAGADIVGADDLLASVMEGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKVGSVTRDVGAAVKAAKGGQAHFRAGKNGVMHIGVGKVSFERSDLMENVRATMVAVSNLKPEVVKGKYISQVHFSSTMGKGIQVEVTSVDPSSPRFM 848
            ++P+ P+  AL   K GA  KFDETV++ + L VDPRK NQ+VR  V LP G+GK VRVAVFAKG+ A  A AAGA IVGA+DLLA +  G +DF+RCVATP+MM++VGR ARVLGPRGLMPN K+G+VT+DV AA+KAA+GGQ  FRA K G++H GVGKVSF    L+EN+RA MVAV   KPE  KGKYI   H SSTMG+GI+++   +DPSSP FM
Sbjct:   42 KKPLLPLNVALVECKQGAVRKFDETVDIVVELGVDPRKPNQSVRSVVSLPHGTGKVVRVAVFAKGDKADEARAAGAAIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVTAAIKAAQGGQVEFRAEKKGIVHAGVGKVSFSDEALLENIRAFMVAVGEAKPEGAKGKYIKACHLSSTMGRGIRLDTRYLDPSSPHFM 262
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BLAST of mRNA_P-littoralis_Contig707.24.2 vs. uniprot
Match: A0A485K7N6_9STRA (Ribosomal protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7N6_9STRA)

HSP 1 Score: 263 bits (671), Expect = 8.290e-84
Identity = 135/221 (61.09%), Postives = 167/221 (75.57%), Query Frame = 3 
Query:  186 RRPMFPVAEALDLVKSGAKAKFDETVEVALVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGEDAAAATAAGADIVGADDLLASVMEGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKVGSVTRDVGAAVKAAKGGQAHFRAGKNGVMHIGVGKVSFERSDLMENVRATMVAVSNLKPEVVKGKYISQVHFSSTMGKGIQVEVTSVDPSSPRFM 848
            ++P+  + +AL   +  A  KFDETV++ + L VDPRK NQ+VRG V LP G+GK VRVAVFAKGE A  A AAGA IVGA+DLLA +  G +DF+RCVATP+MM++VGR ARVLGPRGLMPN K+G+VT DV AA++AAKGGQ  FRA K GV+H GVGKVSF  + L+EN+RA MVA+   KPE  KGKYI   H SSTMG GI+++   +DP+SP FM
Sbjct:   40 KKPLLLLPQALTTCREHAVRKFDETVDIVVELGVDPRKPNQSVRGVVTLPNGTGKVVRVAVFAKGEKAEEAKAAGASIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTNDVTAAIQAAKGGQVEFRAEKKGVVHAGVGKVSFTDAALIENIRAFMVAIGEAKPEGAKGKYIKACHLSSTMGPGIKLDARYMDPTSPHFM 260
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BLAST of mRNA_P-littoralis_Contig707.24.2 vs. uniprot
Match: A0A7S4D8H6_HETAK (Ribosomal protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8H6_HETAK)

HSP 1 Score: 264 bits (674), Expect = 2.280e-83
Identity = 140/225 (62.22%), Postives = 170/225 (75.56%), Query Frame = 3 
Query:  198 FPVAEALDLVKSGAKAKFDETVEVALVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGEDAAAATAAGADIVGADDLLASVMEGNID----FERCVATPEMMSVVGRAARVLGPRGLMPNAKVGSVTRDVGAAVKAAKGGQAHFRAGKNGVMHIGVGKVSFERSDLMENVRATMVAVSNLKPEVVKGKYISQVHFSSTMGKGIQVEVTSVDPSSPRFMYVDE 860
            FPVAEA+  ++S AKAKFDET E+AL L VDPRK NQ VRG+VQLP G+GK VRVA FA G  A AA  AGA +VG   L+  +  G       F+R VATPEMM  + + AR+LGPRG+MPNAKVG++T D+ +AVKAA GGQ  FRAGKNGV+H G GKVSFE+++LMEN++A MVA+SN KPE  KGKYI Q H SSTMG GI+V+V ++DP SPRF +VDE
Sbjct:  100 FPVAEAIQFLQSNAKAKFDETTEIALQLGVDPRKPNQAVRGSVQLPFGTGKAVRVAAFATGAKADAAKEAGAAVVGDQYLVEEIQRGGAGALAAFDRVVATPEMMPHLKKIARILGPRGMMPNAKVGTITEDIESAVKAAMGGQVEFRAGKNGVLHAGFGKVSFEKNNLMENLKAFMVAISNAKPEGAKGKYIKQAHLSSTMGSGIKVDVATIDPGSPRF-FVDE 323
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BLAST of mRNA_P-littoralis_Contig707.24.2 vs. uniprot
Match: W4FM96_9STRA (Ribosomal protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FM96_9STRA)

HSP 1 Score: 261 bits (667), Expect = 3.450e-83
Identity = 134/221 (60.63%), Postives = 166/221 (75.11%), Query Frame = 3 
Query:  186 RRPMFPVAEALDLVKSGAKAKFDETVEVALVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGEDAAAATAAGADIVGADDLLASVMEGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKVGSVTRDVGAAVKAAKGGQAHFRAGKNGVMHIGVGKVSFERSDLMENVRATMVAVSNLKPEVVKGKYISQVHFSSTMGKGIQVEVTSVDPSSPRFM 848
            ++P+ P+  AL   K GA  KFDETV++ + L VDPRK NQ+VR  V LP G+GK VRVAVFAKG+ A  A AAGA IVGA+DLLA +  G +DF+RCVATP+MM++VGR ARVLGPRGLMPN K+G+VT+DV AA+ AA GGQ  FRA K G++H GVGKVSF    L++N+RA MVAV   KPE  KGKY+   H SSTMG GI+++   +DPSSP+FM
Sbjct:   41 KKPLVPLNVALAACKQGAVRKFDETVDIVVELGVDPRKPNQSVRSVVTLPHGTGKVVRVAVFAKGDKADEARAAGATIVGAEDLLADIQAGKLDFDRCVATPDMMALVGRVARVLGPRGLMPNPKLGTVTQDVTAAITAAMGGQVEFRAEKKGIVHAGVGKVSFSDDALLDNIRAFMVAVGEAKPEGAKGKYVKACHLSSTMGHGIRLDPRQLDPSSPQFM 261
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BLAST of mRNA_P-littoralis_Contig707.24.2 vs. uniprot
Match: A0A7S2BLH2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BLH2_9STRA)

HSP 1 Score: 258 bits (659), Expect = 9.690e-82
Identity = 130/215 (60.47%), Postives = 164/215 (76.28%), Query Frame = 3 
Query:  204 VAEALDLVKSGAKAKFDETVEVALVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGEDAAAATAAGADIVGADDLLASVMEGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKVGSVTRDVGAAVKAAKGGQAHFRAGKNGVMHIGVGKVSFERSDLMENVRATMVAVSNLKPEVVKGKYISQVHFSSTMGKGIQVEVTSVDPSSPRFM 848
            VA A+  VK  ++AKFDETVE+A+ L VDPRK+NQTVRG  QLP G+GK VRVAVFAK  DA AA  AGAD+VG +DL+  + +G I+F+RC+ATPEMM +V R AR+LGPR LMPN K+G+VT++V   VK  KGGQ  +RA KNG++H G+GKVSF    L EN+RA M+A++N KPE VKGKYI   H  STMG G ++++ +VDPSSPRFM
Sbjct:   66 VAAAIANVKGRSRAKFDETVELAVKLGVDPRKSNQTVRGATQLPNGTGKPVRVAVFAKDADADAAREAGADVVGGEDLVQEIQKGIIEFDRCIATPEMMPIVSRVARILGPRQLMPNPKLGTVTKNVAVGVKELKGGQVQYRAEKNGIVHAGIGKVSFTDEALSENIRAFMIALTNAKPESVKGKYIQAAHLCSTMGPGFKLDIKAVDPSSPRFM 280
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BLAST of mRNA_P-littoralis_Contig707.24.2 vs. uniprot
Match: A0A3R7KSH3_9STRA (Ribosomal protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KSH3_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.450e-78
Identity = 128/223 (57.40%), Postives = 162/223 (72.65%), Query Frame = 3 
Query:  189 RPMFPVAEALDLVKSGAKAKFDETVEVALVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGEDAAAATAAGADIVGADDLLASVMEGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKVGSVTRDVGAAVKAAKGGQAHFRAGKNGVMHIGVGKVSFERSDLMENVRATMVAVSNLKPEVVKGKYISQVHFSSTMGKGIQVEVTSVDPSSPRFMYVD 857
            +P   V  A+   K+  + KFDETV++A+ L VDPRK NQ+VRG V LP G+GK VRVAVFA+G  A  A AAGA IVGA+DL+  V  G +DF+RC+ATP++M++VGR AR+LGPRGLMPN K+G+VT +VG A+ AA+GGQ  FRA K G++H GVGKVSF    L+ENVRA MVA+S+ KPE  KGKYI   H SSTMG    +++  +DPSS  FM  D
Sbjct:   54 KPAIDVMTAVSKCKAQKQLKFDETVDLAIQLGVDPRKPNQSVRGVVSLPNGTGKQVRVAVFARGPKAEEAKAAGATIVGAEDLVEQVQSGKLDFDRCIATPDVMALVGRVARILGPRGLMPNPKLGTVTMEVGEAIAAARGGQVEFRAEKKGIIHAGVGKVSFSEEALLENVRAFMVALSDAKPEGAKGKYIKAAHLSSTMGPSYTLDIKYLDPSSTSFMRFD 276
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BLAST of mRNA_P-littoralis_Contig707.24.2 vs. uniprot
Match: A0A317DWE8_9PROT (50S ribosomal protein L1 n=2 Tax=Zavarzinia TaxID=204446 RepID=A0A317DWE8_9PROT)

HSP 1 Score: 247 bits (630), Expect = 4.580e-78
Identity = 133/213 (62.44%), Postives = 160/213 (75.12%), Query Frame = 3 
Query:  186 RRPMFPVAEALDLVKSGAKAKFDETVEVALVLNVDPRKANQTVRGTVQLPKGSGKTVRVAVFAKGEDAAAATAAGADIVGADDLLASVMEGNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKVGSVTRDVGAAVKAAKGGQAHFRAGKNGVMHIGVGKVSFERSDLMENVRATMVAVSNLKPEVVKGKYISQVHFSSTMGKGIQVEVTSV 824
            R   +P+ EA+ +V+  AKAKFDET+EVAL L VDPR A+Q VRG V LP G+GKTVRVAVFAKG+ A AA AAGADIVGADDL A V  GNI+F+RC+ATP+MM VVG+  +VLGPRGLMPN K+G+VT +V  AVKAAKGGQ  FR  K GV+  GVGK SF    L EN++A + AVS  KP   KG Y+ +V  SSTMG G++VEV+SV
Sbjct:   17 RTKNYPLTEAVKMVQERAKAKFDETIEVALNLGVDPRHADQMVRGVVTLPNGTGKTVRVAVFAKGDKAEAAKAAGADIVGADDLAAEVQAGNINFDRCIATPDMMVVVGKLGKVLGPRGLMPNPKLGTVTANVAEAVKAAKGGQVEFRVEKAGVLQAGVGKASFSPQALEENIKAFVDAVSRAKPSGAKGTYLKKVAVSSTMGPGVKVEVSSV 229
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig707.24.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST1_ECTSI5.360e-15381.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A067C8G8_SAPPC8.970e-8661.99Ribosomal protein n=3 Tax=Saprolegniaceae TaxID=47... [more]
A0A6G0WIL3_9STRA1.800e-8562.44Ribosomal protein n=1 Tax=Aphanomyces euteiches Ta... [more]
A0A024UFR5_9STRA5.460e-8561.99Ribosomal protein n=4 Tax=Aphanomyces TaxID=100860... [more]
A0A485K7N6_9STRA8.290e-8461.09Ribosomal protein n=1 Tax=Aphanomyces stellatus Ta... [more]
A0A7S4D8H6_HETAK2.280e-8362.22Ribosomal protein n=1 Tax=Heterosigma akashiwo Tax... [more]
W4FM96_9STRA3.450e-8360.63Ribosomal protein n=3 Tax=Aphanomyces astaci TaxID... [more]
A0A7S2BLH2_9STRA9.690e-8260.47Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A3R7KSH3_9STRA2.450e-7857.40Ribosomal protein n=3 Tax=Phytophthora kernoviae T... [more]
A0A317DWE8_9PROT4.580e-7862.4450S ribosomal protein L1 n=2 Tax=Zavarzinia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig707contigP-littoralis_Contig707:86083..93392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LST1
Preferred nameMRPL1
PFAMsRibosomal_L1
Model size977
Max annot lvl2759|Eukaryota
KEGG rclassRC00043,RC00070,RC00096,RC02896
KEGG koko:K01942,ko:K02863
KEGG ReactionR01074,R05145
KEGG Pathwayko00780,ko01100,ko03010,map00780,map01100,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categorymitochondrion
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons7
Evalue8.46e-154
EggNOG OGsCOG0081@1|root,KOG1569@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L1/ribosomal biogenesis protein
Ec32 orthologEc-15_002720.1
EC6.3.4.10,6.3.4.11,6.3.4.15,6.3.4.9
Descriptionstructural constituent of ribosome
Cds size972
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig707.24.2prot_P-littoralis_Contig707.24.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig707 86083..93387 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791476.1309714-CDS-P-littoralis_Contig707:86082..862891680791476.1309714-CDS-P-littoralis_Contig707:86082..86289Pylaiella littoralis U1_48CDSP-littoralis_Contig707 86083..86289 -
1680791476.1461055-CDS-P-littoralis_Contig707:86993..870951680791476.1461055-CDS-P-littoralis_Contig707:86993..87095Pylaiella littoralis U1_48CDSP-littoralis_Contig707 86994..87095 -
1680791476.1587746-CDS-P-littoralis_Contig707:88143..883551680791476.1587746-CDS-P-littoralis_Contig707:88143..88355Pylaiella littoralis U1_48CDSP-littoralis_Contig707 88144..88355 -
1680791476.1758049-CDS-P-littoralis_Contig707:90414..905171680791476.1758049-CDS-P-littoralis_Contig707:90414..90517Pylaiella littoralis U1_48CDSP-littoralis_Contig707 90415..90517 -
1680791476.1942585-CDS-P-littoralis_Contig707:91168..912551680791476.1942585-CDS-P-littoralis_Contig707:91168..91255Pylaiella littoralis U1_48CDSP-littoralis_Contig707 91169..91255 -
1680791476.208677-CDS-P-littoralis_Contig707:91988..921721680791476.208677-CDS-P-littoralis_Contig707:91988..92172Pylaiella littoralis U1_48CDSP-littoralis_Contig707 91989..92172 -
1680791476.2206683-CDS-P-littoralis_Contig707:93310..933871680791476.2206683-CDS-P-littoralis_Contig707:93310..93387Pylaiella littoralis U1_48CDSP-littoralis_Contig707 93311..93387 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791476.2321606-UTR-P-littoralis_Contig707:93387..933921680791476.2321606-UTR-P-littoralis_Contig707:93387..93392Pylaiella littoralis U1_48UTRP-littoralis_Contig707 93388..93392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig707.24.2

>prot_P-littoralis_Contig707.24.2 ID=prot_P-littoralis_Contig707.24.2|Name=mRNA_P-littoralis_Contig707.24.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=324bp
MSSSVRLITVARHGALHACARPASQSSIPCQALRAASSKSRNKNRKKSSP
SEAQAAAAAARRPMFPVAEALDLVKSGAKAKFDETVEVALVLNVDPRKAN
QTVRGTVQLPKGSGKTVRVAVFAKGEDAAAATAAGADIVGADDLLASVME
GNIDFERCVATPEMMSVVGRAARVLGPRGLMPNAKVGSVTRDVGAAVKAA
KGGQAHFRAGKNGVMHIGVGKVSFERSDLMENVRATMVAVSNLKPEVVKG
KYISQVHFSSTMGKGIQVEVTSVDPSSPRFMYVDEGAEAAVKKALEAELV
KAGVAQKAGEGGEEEGEGERASL*
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mRNA from alignment at P-littoralis_Contig707:86083..93392-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig707.24.2 ID=mRNA_P-littoralis_Contig707.24.2|Name=mRNA_P-littoralis_Contig707.24.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=7310bp|location=Sequence derived from alignment at P-littoralis_Contig707:86083..93392- (Pylaiella littoralis U1_48)
GAGTTATGTCGTCCTCCGTCAGATTGATAACCGTGGCAAGACATGGGGCA
TTACACGCATGTGCACGGCCAGCTTCGCAAAGGTGACTACTCGTGCAATG
AGTGTTATGTAGTACAGCTGTTGTACGGGAAAGTTGTGTGACTTGCTGCG
GCTCACGCAGCAGACACCCCAACACAGAAGTAGTCCCTATTTCCTATTTT
GGCTGGGTCGTCGACCCGCGAGTAAGCAACAGCACAACAAAGAGAGCTCT
CACTGCAGTACGCACAAGCGCATCGTAGGTTGGCTGGTACGCACGGAACG
TAAAACTCTTGCGTTTCCTCTTTATGCAAACGCGCGGTCATCGCAGGCTC
TATGTGTATCATAGTGTTCTCGCAGAGGTCTGCTACAGGAGTACGTACTG
CTGCATCAAGTCCCTTTCTCTAATACAGCAGCACTACAACAGCAGCCAAA
AAAAGGCAACATACCTGTACCGCAGTTCTTCTTCCCGCCTCATCTGCGTG
TGTTTCGTCCTCCGTGATGAAGGCACGCAGAGCCACCCGCGGCAGGCAGT
ACAGCAGTAGTCAAGCGGACGCTGTCAATTAACGAACGTGAACATTATAT
TGTACCATACGGCGGTACTGCTACAGTATACTAGCACATGAACTAGTACA
GCACCACATGTGACACTACAGCAGTTCAGCAATACTATCAGCACAGCAGC
AGATCCAGGCCTACAGCAAACATGGAGAGCCAACATAGCCAGAAACTTGC
TTTGTCTGGACGTATGAAAGTGAAAGATTCCTTGTGAGCGCTCACGTACC
AGGTTGTGAATTGCGGGGTGCACTTTATTGTTGGTTCGGGAGAAGACAAA
AACCGAAGCCCCGATGTATTCGGACTCGCGACTCACGACTGCACACAGCA
GTCACCGTTTCGGAGGCTGGTTTTCCGGCAACAGAAACAAGCGAAAGGCG
CCCGTGCCGGGACTCCGTATGCCCCCCCCCTGCACTCCTCCGCTAAGTTG
TGTTGACGCTAGAGCAGTGCGTCAACCATGTTTGTAAAGTATGATACTGA
CGTAATCGAAGTACTTACAAGTACTTTTACGGGTTGCCCGGGTTGCCCAA
GCGTTCAAAGTTGAAGCCCCCCCCACCCCCCCCAACCCCCACCCCCCCCC
ACCAGACGCACAATTTCAACATCTCATTTTTTTTTCAAATTTTGCCCACC
CCACCCAACCCCACCCCCAGCAGCATCCCTTGCCAAGCGCTGCGCGCGGC
TTCCTCCAAGTCTAGAAACAAGAACCGTAAGAAGTCATCGCCTAGCGAGG
CCCAGGCTGCTGCTGCTGCCGCGCGTAGGCCGATGTTCCCCGTCGCCGAG
GCGCTGGATCTGGTGAAGAGCGGCGCGAAGGCGAAGTTCGACGAGACCGT
CGAGGTCAGTGTTTTGATGTGTTCTTGTTATCATAGCACCGCCTGTGAGA
AGGAGGTTGGTTCACGTACAGCAGTACAGCGCAGTACTGCTTCAGGAGAC
CGTTGGTGCGATATTGAAAGCATACTTGCAGCGTAACAGCCTTTTCTATT
TTATACAGGAAAACAGAATCGTCAAGTCGTTTTTTTTCAACACGTTGTTT
CACAGGATTGTTTGTTTTACCCCAGAGTTTTCCTTTCTAAATTTTCCTTT
CAAAATAATCAAACGCTAGATTCCAGCTACTGCGCATACTGCTGAACATG
AATAAGTCACACGAAGTGCACGAAGTGGCTGTGAAAGAGGGTCGTGTCAA
AATTATGTCTTCTGGTGCTCAAAGTTTCGTTGCAGTTCGGTTTTACTACG
CGAGGTAGAGCTGAGTGGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAG
AGAGAGAGAAGAGAGGGAGAAACAGAGATGATGATAACTCGAGAGAGAGA
GAGAGAGAGAGAAAGAAAGAGAGCAAGAGAGAGAGAGAGAAAAACAGAGG
ATGTCAAGCCAGTACATCGAACATGAGGCATGTATGATACGCATATCCCA
AAAAAGAAAATTTCCAAGGGAGGTGATTTGGTGCGCATCTCGGGGTACGC
AATGGCGGTAGGTATGATATCATACAACCACAAGAAAAATAGCTGTTTCA
TTGATTCACACACGCACGACTTTCTTGATGCAAGCAGGTGGCGCTGGTGC
TCAACGTAGACCCCCGGAAAGCGAACCAGACGGTGCGGGGCACCGTGCAG
CTTCCCAAGGGCAGCGGGAAAACGGTGAGAGAGTGAGCTCGAGAGGAGGC
AGAGGGAACGGGGGAGGTCGGAGGTTGCACAATTACCGGAAGGTGTAACA
ACAGCAGGGTAGCGAGAGAGAGAAACAGAGAATGATAAATAAATTGACGA
ACTATTTTTTTTGTTGCTGCAAATTATCTTCCTGGGGGCAGCAGAAAAAC
GGTGAGAAAGTGGGTACATAAGGGACCGGAACAACAGTAGTAGTGAGGGA
AGAGGGAAACAGAGAAAGAGGAATGAAATCGACGAACTTGACTGTTGTGT
CTTCGTCTGCTGTTCAACTCCCCGAGGGCAGCAGGAAGTCGGTAAGAGAG
TGCACTCGAGAGGGGGGCAGGGGGGGAGGTGGCGGTGGGGGGGGGAGGGT
GCACAAAGACAGGAGGGTGCAACAGACAGTAAGGGAGAGGAAACCAGAGA
AAGAGAGATGTATTCGACGTACTGATCATCGCGTTTTTTCCTTTAATTAC
GAGGGAGACCGCGCCTTCCTCTGTTCTTCTGTTCCGCGTGGATGGGGCAA
AATAGGGGGGCATGCGTTCACACGAGCGCGATTCCTCTCCATCCACTTTC
CTGAATACATGCTCGTACTCGTATGCGTACAGCGGTCAGCCGTTCTTGTT
GGCAAACCGGTGTGTTTTATGGTAGGTGCGGGTCGCTGTTTTCGCGAAGG
GAGAGGACGCGGCGGCGGCGACGGCGGCGGGAGCTGACATCGTGGGCGCC
GACGATCTCCTTGCCTCGGTCATGGAAGGTGTGCGCGTGACTTAAGCAGA
CGTACGTACAGCAGTAACGCGCTCTCGTCACATTTTCACCGTCTGCTTTG
CTTTGAGTTCCACAAACGTGCGGTCCAACCACCCCTTCGTATGTGACGTA
CCGCATCATGTACCTAGCGCTAAGTGGTCAAACCAGGCGAGGAAATTAAC
TCCACAAGCATATGTACGCCATCGATCCCTTGCATCATGGCGGCAACCTG
CAGGACGGGTTCACGGGCCTTCTAGTCTCAAGGGTGGGGTTTCGTCACCG
CGATGATATTTGGGAATCGAAAATCGAACATGTCACTGGTTGGCCGAATT
TTCCTGAGCACCTGTGCGAGCAGATTTTCGATTTCGGCGTTGTCCCACCG
AAAGCTTATCGAAAGGTTCAAAATGAAATATTACGATCTGAGAAGTCGAA
AATGCGGCTCAAAAACGCATATAGACCACACACGGAGCAAGAGAGAAAGG
TTTGCTGCGCTTTCCGGCAGCATATCGGTATACGTCAACATGCCGTGGCT
TGGTTGGTTACATTACAAATAGATATTCCCGCCGTACACATGTGATACCT
CTGCAGAAAGCTGGTATATCGTACAGTACAGAGTACTTTGTTCCAGCAGG
TTCTGGTGATAACCCGGAGAGCAGCGCTCAAGTGCACGTGTGCAGAAAGT
AACTGCTCCACGGCCGGTCGTGGAAGGACCTGAAACAGCGGTGCTGCACA
TCGGCATGATTTTTGCCACAAGATCACAACACGAGTTGTGGGTAGCTGCC
GTACACATGTGGTACCTCCCTCCACTCAAAACTCGTATCCCCTAGAGCAT
GGGGTACTTCTCTTGAGTGGAGCCTGCTGAGAACTAAGCGGGGAGGACTC
GTCCGTGTTAAAGGTAAAAGTCGTTGCTCAAACGGCTGACTCTTTGGGCT
TTTGCGTCCTTAGACAGATGGGGAGAGGTATTTACGGCTAGGTGTGTACC
GCGTAATTCCACATCTGTTGCCGAGTTTTTCGGTCATCGATTCCAAACAA
GGGAGTGCCAACGCGCCTGAGTCAGGCCAACGTGTGGGACTATCCTGCAC
TCCTTTTGAGGCACGGTTAGCTCCCGCACTAGTCTTGACACTGCTACAGC
AAGCATTCCATGACCATCTACAGTACTTTGTGACGTGCTGGTCGCTCCTT
CTTCCTTCTTAGGGAAATCAGACACTTGTCTTATTTTGCCCCCCCGCCTT
GAGATTAATTTTCGATGAACGCAGCTACGGCACATCGGGCACAACTCGCT
TTCTGGAATCGAAATTTCGTGTCGGTTGCGGTTTTCGATTGGAATATTTC
GGTGACAAATATCCACCTTCACGTACCCACACTCGAGGAACACTTAAGGA
GTGACAGATGCCCCTTGGTCCTTTTCCGTCTTCTTGCGCCTTCTTCTTCT
TTCGGGATAGTGCCGTCTGCCGGGCTTTATTTTCTTCTTTTCATGCAGCA
CTACAACGGGTCCAGAGCCATGAGTTGCGTTTTAGCTACTGTCATCCGAG
ACGTCTGAACGCTCGCGCCGCTAGCTCTCAAAATCTCATTTTTTTGTCAC
TGATGTTGAAGTGCTTGATGGTCGCACCCCCCCCACGTGCGCTCCTGTTT
ACAAACATCGTGCTTCCTGTCTGGTCATGTCCAGCCGATTCAGGTGGGCT
CGTCGCAGAGCGGTGCTTTACCGCCCCTTCCGAGAGGGATGGTATTCCTA
GCAGGTCCTAGGTAGAGATGAGGGCACAACATGAACGCCCGTCAAAAGTT
TTGAAGCCAGCGTGTGTCTCTCTGTGTGTTTTAAGTATCGTTTGGTGGTC
AAGCCCCCCCCCCACCCCCGAGTCGCACACAGGCGCAAGAGGGGCTAGAA
AGCAACCACCGTGTCAGACCCCACAGATAAACCTGAAACCAAAATTTGCG
AACGACACTGCCAAGAGCGTCGCGCCAACGGACACACACCAACCCCCCCC
CCTCCTTCCCCATCTTTATTCCTCCGCACTTCCTCTCTTTCGTTCCGGAC
GCGACGCTTCCTTTTCAACCTCACTCCTCCCGCGCAGGCAACATCGACTT
CGAGCGGTGCGTGGCCACCCCCGAGATGATGTCTGTCGTCGGCCGCGCTG
CAAGGGTGCTGGGTCCCAGGGGCCTGATGCCGAACGCCAAGGTCGGCAGC
GTCACCAGAGACGTCGGGGCGGCGGTGAAGGCGGCGAAGGGGGGACAGGC
GCACTTTCGGGCGGGGAAGAACGGCGTCATGCACATCGGGGTCGGAAAGG
TGAGTACATACAGTACATCAGCCAGGTGCTGGTCGTCGGGTTTAGGAGGA
TGAGTGTTTTCGTGTGTGCGGATTGGGGTATGGGATGGCATGACATGAGA
AAGTCACGATAGCGAATGAAATTTTCAGGTATGCTGTGCTGTGCTGTGCT
GTGCTGTGCTGTGCCTGTCTAGTTGGTCGGGAAGGGGGGGGGGGCGCTAT
CATATCGTACGCATGTACATTTGCGGTGGTTCCGAAAACACGAGTCAATC
GACTGGTTGGGTGAGGAATGCGATGTGCATGCGTGTATGATGGGGTTGGA
AAACGTGAGGGAGGGAGCTACGGAGCCTGAGGGTTGTGCTGCGCTGTGCC
CGTCTGGTTGATTTTGGGGGGGAGTGGGAGGGGGGGGTGTCGTATTCATG
CATACACTTGTGCTCGGAAAAGCAAGTCTTCGGTCAGGTTGATCGGCGTG
CGCTGCGTTTCCATATCATAAATTTACTTTGGACTGGAAAACGTTTGCCC
GCCGTGAAGCCGACCGGGGGGGCTCTATATGCATCGCGGCACATATCATA
CAGCCGACCCCATCATTCCGAGCGGAGAGCTTGACATCATACCTGGTGGA
AACTGCCGCAGTTTTTCTGCAAAAAACAATGCCAGCGCTGTACCGGAACG
CATATTCGTGTTTTCAGTCGCTCTTTTCTGGTGTGCGTGTGTTGCCGTGG
AAGTACATGATGCTGGTTGCGCTCTTCCTCGGGCTTTCGGTATCAAGGGC
TCGAGGGATCGATCCGGCTACCGTGAGTCTCTGCGGTGTTGCGACTGCAA
CTATGCACTCATCCGCACACACGGTACCCCCAGTATGCCATTCACCGCAT
CAGCAAAGCAGCAAGTGTGTGTTTGTCGGTGGATGGTCACTTCCGAGACC
GCTTCATTTCGTTGGTTCATCATGGTTTTCAGACGTTTTGTGTTTATTTT
TTCGCTTTTTTTCATTTCCTGTTCCTGAATTTATTTCCCGTTGTTTCCCG
TTGTTTCCCGGTGTCATTCACGTATGAATCGTTTTCTCCATCGGCAGGTG
AGCTTTGAGAGATCAGACCTGATGGAGAATGTGCGGGCGACCATGGTGGC
GGTCTCCAACCTCAAGCCGGAGGTCGTCAAGGGGAAGTATATCTCTCAGG
TGCGCCCTCTTTGATGATCCTCGCTGCTGGCCCACACGTAAATATTACAC
CGCAACGCCAGATGCAACCTAGAAACTCACGAAAGTCATCACTCGAAGTA
ATGGTCCACTTGAACCCGGTGCAGGGAGTGAGCATCAAACCCCGTAGACG
TGGTTGTGGTTGGCCACTTTCTCCCCGAGACATCCTACCTAACCCCCCTT
CCTGTGTTTTATTTCGTTTGTTTCCCTCCCCCCTGTTCGTTTTACTCTTC
TTCCTTCCCCGCCCTTCCCCCTAGTCAACCGGAACCCCAACAGAGTACCC
TTGATAGTCTCAACAGTCCCGTTTCATCCTGTCAGCTGAAGCACTGCCAG
TAACCCCAATCTCCTTGAAACCCCCGAAATAATATTTTCATCTCGACGAT
TGGGAAGGACGTCCGTCCACGTAGGGGTGGCCATCGGTTAAGCATCCAAG
ATCCCCTCGCCTTCCTCTCCCTGCTTTCCCCCCTTTATCATTGAAATCTG
TTCCTGGTACTAAATTTCACCCTACAATCGCAGCGTTAAGGGGCTCGACG
ATAGAGAAAGGCCAAGGCACTCCCGTGGAGGTGTCAACCGTAAACCCCAA
GACCACCCCCCCTTCTCCCTCTCTCCCCACCCCCCTATGCAAGTGGAAAC
CCGGCTTTTTCTCACCGCGTAAATCAACGCTAATGAAACTTTAAAAACGA
CAGGTCCACTTTAGCTCGACGATGGGCAAAGGCATCCAGGTGGAGGTGAC
ATCCGTAGACCCGAGCTCGCCCCGTTTCATGTACGTGGACGAGGGCGCGG
AAGCCGCCGTCAAGAAGGCGTTAGAGGCGGAGCTTGTCAAGGCGGGGGTG
GCGCAAAAGGCGGGGGAGGGGGGAGAGGAGGAGGGGGAAGGGGAGCGAGC
CTCCTTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig707:86083..93392-

>mRNA_P-littoralis_Contig707.24.2 ID=mRNA_P-littoralis_Contig707.24.2|Name=mRNA_P-littoralis_Contig707.24.2|organism=Pylaiella littoralis U1_48|type=CDS|length=972bp|location=Sequence derived from alignment at P-littoralis_Contig707:86083..93392- (Pylaiella littoralis U1_48)
ATGTCGTCCTCCGTCAGATTGATAACCGTGGCAAGACATGGGGCATTACA
CGCATGTGCACGGCCAGCTTCGCAAAGCAGCATCCCTTGCCAAGCGCTGC
GCGCGGCTTCCTCCAAGTCTAGAAACAAGAACCGTAAGAAGTCATCGCCT
AGCGAGGCCCAGGCTGCTGCTGCTGCCGCGCGTAGGCCGATGTTCCCCGT
CGCCGAGGCGCTGGATCTGGTGAAGAGCGGCGCGAAGGCGAAGTTCGACG
AGACCGTCGAGGTGGCGCTGGTGCTCAACGTAGACCCCCGGAAAGCGAAC
CAGACGGTGCGGGGCACCGTGCAGCTTCCCAAGGGCAGCGGGAAAACGGT
GCGGGTCGCTGTTTTCGCGAAGGGAGAGGACGCGGCGGCGGCGACGGCGG
CGGGAGCTGACATCGTGGGCGCCGACGATCTCCTTGCCTCGGTCATGGAA
GGCAACATCGACTTCGAGCGGTGCGTGGCCACCCCCGAGATGATGTCTGT
CGTCGGCCGCGCTGCAAGGGTGCTGGGTCCCAGGGGCCTGATGCCGAACG
CCAAGGTCGGCAGCGTCACCAGAGACGTCGGGGCGGCGGTGAAGGCGGCG
AAGGGGGGACAGGCGCACTTTCGGGCGGGGAAGAACGGCGTCATGCACAT
CGGGGTCGGAAAGGTGAGCTTTGAGAGATCAGACCTGATGGAGAATGTGC
GGGCGACCATGGTGGCGGTCTCCAACCTCAAGCCGGAGGTCGTCAAGGGG
AAGTATATCTCTCAGGTCCACTTTAGCTCGACGATGGGCAAAGGCATCCA
GGTGGAGGTGACATCCGTAGACCCGAGCTCGCCCCGTTTCATGTACGTGG
ACGAGGGCGCGGAAGCCGCCGTCAAGAAGGCGTTAGAGGCGGAGCTTGTC
AAGGCGGGGGTGGCGCAAAAGGCGGGGGAGGGGGGAGAGGAGGAGGGGGA
AGGGGAGCGAGCCTCCTTGTGA
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