mRNA_P-littoralis_Contig707.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig707.21.1
Unique NamemRNA_P-littoralis_Contig707.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig707.21.1 vs. uniprot
Match: A0A6H5L128_9PHAE (COX assembly mitochondrial protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L128_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.270e-43
Identity = 70/88 (79.55%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:  289 MHPPLLRPHPSCHEEVKALMACHDENPYGKFFGTCNEFKLALDNCFKSEKEEQRRRNMAQARKFDAGFQQELELRRKELQQEQEQEAR 552
            MHPPLLRPHPSCHEEVK LMACH+ENPYGKFFG CN+ KLALD+CF  EKEE+RR+N+A+AR+FDAGFQ+ELELRRKEL+QEQ+Q  R
Sbjct:    1 MHPPLLRPHPSCHEEVKMLMACHEENPYGKFFGACNDLKLALDSCFVLEKEEKRRKNLAKARRFDAGFQKELELRRKELEQEQQQAGR 88
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BLAST of mRNA_P-littoralis_Contig707.21.1 vs. uniprot
Match: A0A6A3SY18_9STRA (COX assembly mitochondrial protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SY18_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.480e-21
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:  289 MHPPLLRPHPSCHEEVKALMACHDENPYGKFFGTCNEFKLALDNCFKSEKEEQRRRNMAQARKFDAGFQQELELRRKELQQEQEQEA 549
            MH PL RPHP C  E+KAL+ CHDENPY KFFG C E K ALD CF+ EK   R  N   A+  DA  +Q+++ RR  + +EQ+ +A
Sbjct:    1 MHTPLDRPHPDCQAEIKALLECHDENPYAKFFGACGEVKTALDWCFRQEKTRIRSENFKHAKASDAFVRQKMQERRDRMAEEQKAKA 87
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BLAST of mRNA_P-littoralis_Contig707.21.1 vs. uniprot
Match: F0Y773_AURAN (COX assembly mitochondrial protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y773_AURAN)

HSP 1 Score: 91.3 bits (225), Expect = 1.140e-20
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  289 MHPPLLRPHPSCHEEVKALMACHDENPYGKFFGTCNEFKLALDNCFKSEKEEQRRRNMAQARKFD 483
            MHPPL RPHP C   V  L+ CHDENPYGKF+G CN+ K A+D CFK EKEE+RR N  + R F+
Sbjct:    1 MHPPLYRPHPKCAALVDLLVKCHDENPYGKFWGACNDEKAAMDWCFKEEKEEKRRANFEKTRSFN 65
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BLAST of mRNA_P-littoralis_Contig707.21.1 vs. uniprot
Match: A0A3M6VJT8_9STRA (COX assembly mitochondrial protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJT8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.340e-20
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:  289 MHPPLLRPHPSCHEEVKALMACHDENPYGKFFGTCNEFKLALDNCFKSEKEEQRRRNMAQARKFDAGFQQELELRR 516
            MH PL RPHP C  E+KAL+ CHD NPY KFFG C++ K ALD CFK EKE  R  N+ +A+  DA  +Q+++ RR
Sbjct:    1 MHTPLDRPHPDCQSEIKALLQCHDNNPYAKFFGACSDVKTALDWCFKHEKERIRAENLKRAKASDAFVKQKMQERR 76
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BLAST of mRNA_P-littoralis_Contig707.21.1 vs. uniprot
Match: A0A225VCF9_9STRA (COX assembly mitochondrial protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VCF9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.910e-20
Identity = 42/76 (55.26%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:  289 MHPPLLRPHPSCHEEVKALMACHDENPYGKFFGTCNEFKLALDNCFKSEKEEQRRRNMAQARKFDAGFQQELELRR 516
            MH PL RPHP C  E+KAL+ CHDENPY KFFG C E K ALD CF+ EK   R  N   A+  DA  +Q+++ RR
Sbjct:    1 MHTPLDRPHPDCQTEIKALLECHDENPYAKFFGACGEIKTALDICFREEKNRIRSENFKHAKASDAYVKQKMQERR 76
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BLAST of mRNA_P-littoralis_Contig707.21.1 vs. uniprot
Match: K3WST6_GLOUD (COX assembly mitochondrial protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WST6_GLOUD)

HSP 1 Score: 89.7 bits (221), Expect = 5.620e-20
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:  289 MHPPLLRPHPSCHEEVKALMACHDENPYGKFFGTCNEFKLALDNCFKSEKEEQRRRNMAQARKFDAGFQQELELRR 516
            MH PL RPHP C E + AL  CH+ENP  KFFG CNE K+ALD CFK EKE +R  N+ +AR  DA  +Q+++ RR
Sbjct:    1 MHAPLDRPHPDCQEVIMALNLCHEENPRMKFFGACNEAKVALDKCFKKEKERKRDENLRRARASDAYVRQKMKERR 76
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BLAST of mRNA_P-littoralis_Contig707.21.1 vs. uniprot
Match: W2G7J4_PHYPR (COX assembly mitochondrial protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2G7J4_PHYPR)

HSP 1 Score: 89.7 bits (221), Expect = 7.210e-20
Identity = 41/76 (53.95%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:  289 MHPPLLRPHPSCHEEVKALMACHDENPYGKFFGTCNEFKLALDNCFKSEKEEQRRRNMAQARKFDAGFQQELELRR 516
            MH PL RPHP C  E+KAL+ CH+ NPY KFFG C E K ALD+CFK+EK   R  N   A+  DA  +Q+++ RR
Sbjct:    1 MHAPLDRPHPDCQAEIKALLECHENNPYAKFFGACGEVKTALDHCFKNEKIRMRSENFKHAKASDAYVRQKMQERR 76
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BLAST of mRNA_P-littoralis_Contig707.21.1 vs. uniprot
Match: A0A835ZCC5_9STRA (COX assembly mitochondrial protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.810e-19
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:  289 MHPPLLRPHPSCHEEVKALMACHDENPYGKFFGTCNEFKLALDNCFKSEKEEQRRRNMAQARKFD 483
            MHPPL +PHP C E V+ L+ CHDENPYGKF G CNE K ALD CF+ EK  + + NM  A+  D
Sbjct:    1 MHPPLFKPHPMCQEMVEQLVKCHDENPYGKFLGACNEAKTALDKCFRQEKIARYKANMESAKAMD 65
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BLAST of mRNA_P-littoralis_Contig707.21.1 vs. uniprot
Match: G4ZUD5_PHYSP (COX assembly mitochondrial protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZUD5_PHYSP)

HSP 1 Score: 88.6 bits (218), Expect = 2.130e-19
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:  289 MHPPLLRPHPSCHEEVKALMACHDENPYGKFFGTCNEFKLALDNCFKSEKEEQRRRNMAQARKFDAGFQQELELRRKELQQEQEQEA 549
            MH PL RPHP C  E+KAL+ CH+ENPY KFFG C + K ALD CF+ EK   R  N  +A+  DA  +Q+++ RR  +  EQ+ +A
Sbjct:    1 MHTPLDRPHPDCQAEIKALLECHEENPYAKFFGACGDVKTALDWCFREEKVRIRSENFQRAKASDAYVRQKMQERRDRVAAEQKAKA 87
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BLAST of mRNA_P-littoralis_Contig707.21.1 vs. uniprot
Match: A0A0P1AB85_PLAHL (COX assembly mitochondrial protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB85_PLAHL)

HSP 1 Score: 87.0 bits (214), Expect = 6.050e-19
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:  289 MHPPLLRPHPSCHEEVKALMACHDENPYGKFFGTCNEFKLALDNCFKSEKEEQRRRNMAQARKFDAGFQQELELRR 516
            MH PL RPHP C  E+KAL+ CH++NPY KFFG CN+ K ALD CFK EK   R  N+  A+  DA  +++++ RR
Sbjct:    1 MHAPLDRPHPDCQIEIKALLDCHNDNPYAKFFGACNDVKSALDQCFKKEKIRIRSENLRHAKASDAYVRRKMQERR 76
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig707.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L128_9PHAE1.270e-4379.55COX assembly mitochondrial protein n=1 Tax=Ectocar... [more]
A0A6A3SY18_9STRA4.480e-2151.72COX assembly mitochondrial protein n=2 Tax=Phytoph... [more]
F0Y773_AURAN1.140e-2061.54COX assembly mitochondrial protein n=1 Tax=Aureoco... [more]
A0A3M6VJT8_9STRA1.340e-2055.26COX assembly mitochondrial protein n=1 Tax=Peronos... [more]
A0A225VCF9_9STRA2.910e-2055.26COX assembly mitochondrial protein n=1 Tax=Phytoph... [more]
K3WST6_GLOUD5.620e-2056.58COX assembly mitochondrial protein n=1 Tax=Globisp... [more]
W2G7J4_PHYPR7.210e-2053.95COX assembly mitochondrial protein n=16 Tax=Phytop... [more]
A0A835ZCC5_9STRA1.810e-1958.46COX assembly mitochondrial protein n=1 Tax=Tribone... [more]
G4ZUD5_PHYSP2.130e-1949.43COX assembly mitochondrial protein n=1 Tax=Phytoph... [more]
A0A0P1AB85_PLAHL6.050e-1952.63COX assembly mitochondrial protein n=1 Tax=Plasmop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig707contigP-littoralis_Contig707:80215..83170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000014749
PFAMsCmc1
Model size629
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.95e-22
EggNOG OGs2CZWX@1|root,2SBZE@2759|Eukaryota,1MI5Q@121069|Pythiales
Ec32 ortholog descriptionCytochrome c oxidase biogenesis protein Cmc1-like
Ec32 orthologEc-15_002730.1
DescriptionCNPV141 HAL3-like domain protein (ISS). Source PGD
Cds size267
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791476.0477102-UTR-P-littoralis_Contig707:80214..805021680791476.0477102-UTR-P-littoralis_Contig707:80214..80502Pylaiella littoralis U1_48UTRP-littoralis_Contig707 80215..80502 +
1680791476.0959466-UTR-P-littoralis_Contig707:83096..831701680791476.0959466-UTR-P-littoralis_Contig707:83096..83170Pylaiella littoralis U1_48UTRP-littoralis_Contig707 83097..83170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791476.0607152-CDS-P-littoralis_Contig707:80502..805441680791476.0607152-CDS-P-littoralis_Contig707:80502..80544Pylaiella littoralis U1_48CDSP-littoralis_Contig707 80503..80544 +
1680791476.0738332-CDS-P-littoralis_Contig707:82538..826371680791476.0738332-CDS-P-littoralis_Contig707:82538..82637Pylaiella littoralis U1_48CDSP-littoralis_Contig707 82539..82637 +
1680791476.0837479-CDS-P-littoralis_Contig707:82970..830961680791476.0837479-CDS-P-littoralis_Contig707:82970..83096Pylaiella littoralis U1_48CDSP-littoralis_Contig707 82971..83096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig707.21.1prot_P-littoralis_Contig707.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig707 80503..83096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig707.21.1

>prot_P-littoralis_Contig707.21.1 ID=prot_P-littoralis_Contig707.21.1|Name=mRNA_P-littoralis_Contig707.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
MHPPLLRPHPSCHEEVKALMACHDENPYGKFFGTCNEFKLALDNCFKSEK
EEQRRRNMAQARKFDAGFQQELELRRKELQQEQEQEAR*
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mRNA from alignment at P-littoralis_Contig707:80215..83170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig707.21.1 ID=mRNA_P-littoralis_Contig707.21.1|Name=mRNA_P-littoralis_Contig707.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2956bp|location=Sequence derived from alignment at P-littoralis_Contig707:80215..83170+ (Pylaiella littoralis U1_48)
AAAACCGGTACCCCCTTTGGAAAAATTCTTCTGCCTGTACCATATGTGTG
TGTTGTGTGTGGTCAAAACGATGGAACTGACGCGACTTTCGTAGATCACG
TTGGGGGTTCGAATCTTCCATTAAAGATAACTCGCCGCATGTGCTATGTA
CAACACACACGGACAGCGGTCTGACAGTCTCGTGCCTCCTGCCTTTCAGC
TTCTTGCCTCGTGTCTCGAGTCTCCATCCGTGGTGGAGTGCTCGCTCAGC
GTCAGGGTTGACACTCTGTATTATATGCTGCTTGAACCATGCATCCACCA
TTGCTGCGGCCGCACCCCAGCTGCCACGAGGTAAGCGACCCGCCGACTTC
GTTCCCCTGTTCAAGCGCGGAACGAAGCGACGCTGACACCGGTTCTTCAC
TGATGCGTGTGTCGTGATCTCTTCTACTGCTGTAGACCTTTGTTGACGGA
GGCGTGCTGCAGCTGGGTGCTGTTGGTGCGCACCGTGCGATTTGCGTACT
ACCTTGCGGTGTTCGCTGTTGATGCTGCTGTTATCGCCGTTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGGGTCTGGGGCTACCTCTGTTGTTGTTGC
GGCTGGTGCTCCAGGGTGGTGCCGCTGCTGCTGGGTGATGTGATGGTGCC
ATTGTTTGCGGTGCTGCTGTTGTATTTTGAGCCCCTTCCAGGCCGTCCAT
CGAGGCTGGGGCGACACTTACACACAAGTTTTTACCTACACGTGTACGTC
ACGGTTTGCATCCCAAGCCCCCAAGCCCGTTGGGCGCCCTTGCACACCGC
ATATGACGGTGCATACCACCCCCCATCTTTTATTTTCAAACAGCAGTTCT
TGTATGATACTCCGTATACTTCTCGAAATACGGAATAGATACACATTGGC
ACCCTTTTGAGCTTGGGGTAATAAAACTTTGAACGTCGTTCCAAGAGGGC
GATGGCACCGAGTACTTCGTACTTCGTATCAAAATCGTCGCGGTACAACA
GAGTATACCTACGTTGGCATGCTCTTTTGTGTGGGTTAGGCGAACTTTTG
AACGTCGTTCAAAGTGGGCGATGGCACGGATGTATGTCAACATCTTCGCG
ATACAACAGATTACGGTACCAATCCTGTACCGGGTACAAACAAGAACTTC
GAAGTGGAGTAGACAAGTAAACACACCCGGCTTCTTGAACGGACCTTTAT
CAAAAACTCCATCGCAGAGACGATCCCGAGGCTCCGGCCAATACTTGGGT
ACAGTAAAAGCATTGACTCCTGCTGTTGCGCCAGTCGCCATGGGTGCCAT
CGTATCTAAAACTTGAGAACTTGCTAATCTACTCCTGCACACGCTTATGC
GAGATGCGATGAAAAACAGAGAGATCGATCATACGTGGGGTGGTGGTTGC
GATCGTTTCCTCCCGATCCGATTTCCCGATGTCCACAAAGAGGGAGGGTG
CCAACGTTGGAGAGGTTGCCGTCGGGAAGATCGTGCCAAAGCCTTTCCCG
AAAAGTGATGGCTCGGCGTCGTAACCTTCCAGAACCTTCCCCTGTTGTCG
AGATATCGGCCCGGGAAAAAACGATCGCTTCTCCGTGCCCTATCTCCGAC
ATTTTCGGTATACCGCAGCAGCAACTATACTTCGAAGTGTGTTCGTACTA
CATACCTGGTCTCAGCAAACTATCTCTCTCCAATCTCATTCGTAAATACG
CACCCAATCTCAACTGCCGCTACTATATTGCAGCAATAGTTATACTTGCG
TGCAGCCGTACGCCGAACACCGTACGTGTGCTGAGCCTTTCCCGTGTTTT
GGGAAAAAATATCGCGCCCGATGTTGAAAAATACAAGTATAGCACATGGA
AGGGGCGTAAATAGGTGATGGTCGACCACTAACTCCATGAGCAAACCTCT
GGGGTCAAATGCACAGCCGCAGCAGCAGCACAAGCTGTGGCACTGATCGT
GCGCGAAGGGATCTTGAAGATAATGGCACTCACCCCCCCCCCCCCCTCCC
TACAGCCGCTGTCTCTCACGCAAGCAGCATCAGACAAGCGATGTGAGACG
TCCTTAGGTTTCCCGCCCAACCTGCCACTCCGACCACATACACGTTCTCA
ACGTAGTGTTTTCTTGCCGGGAGTTGTACAGCAGACCTCGTGTTTGCACA
TTTTTGTGTGTTTTAGCGGCTGCTGCTGCTGCTGCGGCTTCGACGGCGGC
TTCGGCTAAGGCTGCGGCTGGGGCTGCTCGTGCTTCATATTGTGTGATGT
CGCAAACTTTCCCCCCGTGCACTCCCCGCTGCTAACCCCGCACACGCATG
GCACACACGTAACGCTGAATCCAGGAGGTGAAGGCGCTAATGGCCTGTCA
CGACGAAAACCCGTACGGAAAGTTCTTCGGGACCTGTAACGAGTTCAAGC
TCGCGCTGGACAACTGCTTCAAGGTGAGACACAGAGGGTCAAGAGTGGGA
GAAAGGCAGGGAGGAGAAGAAGGAAAAGAGCATGGGGCGACACGAGATAG
CAAATACGGCGCATATCTTTTATTTTTTCCTCCATTTACGAGCTATTTCG
AGTGTGTGCGTGTGCGTGTGGGTCTGACCCCTGTTTGCGCCAAATCCTCT
CGGAGCTGGCTCGCTTTGTAGGGTACGTACAGCCTTCTCAAAATTTGGAA
GCTTGGTGGAAGGAGAGTTGTTGTAATTTTTGCGAATCTTTCTTTATTCA
CCACTGTTGTTTCTTCCCGATTGCTGTTTCTATTTGTGTCGATCTGTACC
GCGCAGTCGGAGAAGGAGGAGCAGCGGCGACGGAACATGGCCCAGGCCCG
AAAGTTCGATGCCGGCTTTCAGCAGGAGCTGGAGCTGAGACGAAAGGAGC
TCCAGCAGGAACAAGAGCAGGAAGCTCGGTAGCAGCATCAGCAGTAGTGT
AACAGCAGAGTGTTTAAGGAGGTTGGGTGATTTCACCGGCCTTAGTAAGG
GAGGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig707:80215..83170+

>mRNA_P-littoralis_Contig707.21.1 ID=mRNA_P-littoralis_Contig707.21.1|Name=mRNA_P-littoralis_Contig707.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig707:80215..83170+ (Pylaiella littoralis U1_48)
ATGCATCCACCATTGCTGCGGCCGCACCCCAGCTGCCACGAGGAGGTGAA
GGCGCTAATGGCCTGTCACGACGAAAACCCGTACGGAAAGTTCTTCGGGA
CCTGTAACGAGTTCAAGCTCGCGCTGGACAACTGCTTCAAGTCGGAGAAG
GAGGAGCAGCGGCGACGGAACATGGCCCAGGCCCGAAAGTTCGATGCCGG
CTTTCAGCAGGAGCTGGAGCTGAGACGAAAGGAGCTCCAGCAGGAACAAG
AGCAGGAAGCTCGGTAG
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