mRNA_P-littoralis_Contig707.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig707.1.1
Unique NamemRNA_P-littoralis_Contig707.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig707.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig707contigP-littoralis_Contig707:12..4905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1547
Hectar predicted targeting categoryother localisation
Exons2
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791475.3556466-UTR-P-littoralis_Contig707:11..1201680791475.3556466-UTR-P-littoralis_Contig707:11..120Pylaiella littoralis U1_48UTRP-littoralis_Contig707 12..120 +
1680791475.369201-UTR-P-littoralis_Contig707:3467..35001680791475.369201-UTR-P-littoralis_Contig707:3467..3500Pylaiella littoralis U1_48UTRP-littoralis_Contig707 3468..3500 +
1680791475.3962007-UTR-P-littoralis_Contig707:4007..49051680791475.3962007-UTR-P-littoralis_Contig707:4007..4905Pylaiella littoralis U1_48UTRP-littoralis_Contig707 4008..4905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791475.3845901-CDS-P-littoralis_Contig707:3500..40071680791475.3845901-CDS-P-littoralis_Contig707:3500..4007Pylaiella littoralis U1_48CDSP-littoralis_Contig707 3501..4007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig707.1.1prot_P-littoralis_Contig707.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig707 3501..4007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig707.1.1

>prot_P-littoralis_Contig707.1.1 ID=prot_P-littoralis_Contig707.1.1|Name=mRNA_P-littoralis_Contig707.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
MRDSDGRFTWYSLRAHLEAAMKMATDLNLLDARKVLTDTIARGNRLVAAC
SDPVIVLGVFSKMLPWVHGVSQEVYEVDCADLRKVTLLARNFFTNHGGRG
GGGSGGAGSGKTRGSRHHSGAGGPVHRGLPARQCVFHNACGYHGRQDPRG
GHGQRPAELLWSAHRSYG*
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mRNA from alignment at P-littoralis_Contig707:12..4905+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig707.1.1 ID=mRNA_P-littoralis_Contig707.1.1|Name=mRNA_P-littoralis_Contig707.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4894bp|location=Sequence derived from alignment at P-littoralis_Contig707:12..4905+ (Pylaiella littoralis U1_48)
AGGGGTACTCTCATCCTCTCTTCTACCAGTTCGAGCGTTCGCATCCATCA
TAACCACGACGTGTTGGGGCTGTTCGTGACAGCTCCCTTGGTTCTTCCTC
GAGCGCCATGTGAGTGCCGTACAGTAGTGCATCGAAAAAGGACATTGCTG
TGAGTGTCGTACGTTGCCGGTGTACGGCCCCGCTGCTCACCTGCAGAGAG
TTTCGTTCCCTGCTAGGTACTGCATTGACTGTCTGTCTCGCTGATAGCCA
GAATCCATCTTTCTCACTAGTCCCATCCGTCTCGGTGGGTGCATAGGCAA
CCACAAAGGATGCACCGTTCGAGCCAGTGAGTTGCAGGCGTACCTTCATC
AGTCTTGCGCTAATGCACTCCACCGTCATACCTCCTTTGTCCATCCCATC
CACGATGGACTGCTTGAAAGGCAACCCTACCCCGTGCACTCCTTTCTTCT
CGGTGGTCCCGGCACGTGCTCAACTCGAGATCACAACATATCCCGCGTGT
GTGAAGGCACCATCATTAGCACGCCGGGTTTCCTGGAGGCCAACCACATC
GCAATCGGAACTACCACAGAGCTGTAGTACGGTGTTGGAGTTGCGACCGA
TACCGTTGGCGCCTTTGTAAGTAAGGGTGCGGACGTTGAAGGAGCCCACT
ACCAGTTCGCCTGCACGTGCCTTTGATGTCATCTCTGCCCGTCTCTTTCG
GTCAGCCTTGCGTAAAGGTCAGTTTCGCTTCCGTTTCTTTCGAGCTGCAA
TTTCCTCCGTTCCATCCATCTTTGCCAAGCTCGGTACTCGTCTACGTTCA
GGCGGGCTAGGGACGACACTCCCGGCCAGCGTCGACGTGAAGGTCGACGA
GGGTGCTTACTAACGTGGTGCCTAGTCTCTCTGCTCCTCAGGCTACGAGT
TCCACGATTTCCGCGGTGATGTGTCGACACAGCTGCCGCAGACAGTTTGA
CTGTCGCGGAGACCAGACCATAGTTGGTCCGGACTGCTGTAGTGCCATTC
GTCACCTCCATCACCTACCCAGCCTCGGCGTGCGCCGAGTAGGGTCTGAC
CACACCACTCCCACACTACCCTGTCTACTCTGGTAGAGCCCGGTGTGTCC
ACGAGGGACCCACTAGGTTGGGTGACCCCGGCCGAGGAGCAGCCGAGGGA
GGAGGAGGAGGAGTACGTGTATCCGTTTTTGTTCGTCACATCTAGTCTGC
ACCTTTCGGTTGAGTGGGTGCACCAGCTGGGGTGGCACAGAAAGGTCACA
CAGGAGCTTTCTGCTGTCTACCTGGTACATACTATTTCTATCTTGTACGA
TACGGCGGCTGTGCGCTGTACAATGGCGAGGGAGCGACGTCATTATGCTG
TACCCTGCTGACGTATATTGCTGTACCGTACTGTTGTGCCCTGCTCATCA
CGTATGTTGATTCTCACATTAGCTCATCGCCAAAATCTAGCCCGTGGTCA
CAAAAAGTGCTGAGCCCTAGGAAGATAAAAGAAACGGAAAGAAACTACAA
GGGAATACCCAAGAAAGATCGAAGAAGATACACCTTCCTACGCGGTGTGC
ATCACTGAACTACAGCAGTCACAGCAGTACCAACATCAAACGTACTTCCA
GCGTCGTTCATTTGACTACAAAATCGTGTTCAGTCTCCTCTCGCCCCACT
TATAACTATTAACCTGCTGCTACAAGTCAGTACAAGTAGGTAGCTGCAGA
CTACAGCAGTTAGTTGCTGTCGGGCGTGCTGCCTGCAACGTACAAGTAGC
CCCGGCAATCGGAGAAGACAGAAAAAGAAAAAACACAAAAACACACACGT
ATCATCAGATAAGTGTTGTCGAGGATGGTGTCTCCATGCCGTCCTTGCGA
CGCTGGTGATGATGTCGCCCGAAACATGTTCTCCTTGTCTGGGTCCACTT
TGCTCTTAGCGTTACCCAAGGCCACATCATCAGTACCATGCTCTCGTGAC
GCTTCTTCACTGCCGACGTTGCCTTAGGTCACCTCCATCACCGCCGCTCT
CTCACATAACAGCTCTTTCTTGTTGTTCCTTTCCCATCAGTTCACTGTGT
AGGGGGGCTGCACCACCGCTGATGAAGGAGTACTTTTTTTGCACGGCGAC
GAATACAATGGGGCGACGGCAACTATGTTCGTAAAGTCTTGTCCTTTTCA
CGATCGCACGGCGACGATTCCAATTTTTTGCACGGCGGCGATTACAATTT
TATGATATGCTGCGACAACGACTATTTCCGTGAAAGCCGTTCTTTTTCAC
GATGGCACGGCGACGATTAGAATTTTTCACGATTGCACGGCGATGATTAC
TACATTTTTGCACGGCGACGATTACAGTGCGGCGACGGCGACTATTTTCG
TGAAGACTTGCCTTTTTTCACGATTGCATGGCGACGATTACAATGCGGCG
AAGGCGACTTTTTTTCGTGAAGTCTTGTCTTTTTCACGATTGCACGGCGA
CGATTACAGTACCGGCCCGCTAATAAGAAACCAGTAAATCTGGCTCAGGC
TGACTTCTTATGTTGGGTTGAAAGTCGAGCATGACACTTTCTTATGTATT
GTATAGGATTGAGTGTAGCACTCGCCGCCCAGGCTGGGCACTTTCTTAAT
TTTCTGAAAATCTCAGGCTGACTTTCTTCAAAGGAGCTTTCTTATTAGCG
GGCCGGTACTGTACAATTTAACAATGCGGCGACGGCGACTATTTTCGTGA
AAGCTTGTATTTTTCACGATCGCACGGCGACCAATACATTGTTTTTGCAC
GGCGACAATTACAGTGCGGCGACGGCGACTGTTATCGTGAGGTCTTGATG
ATTACAATGCGGCGACGACGACTCTTTCCGTGAAAGCTGGTCATTTCCAC
GATGGCACGGCGACGATCACAATTTTGCACGATTGCACGGCGATGATTGG
TACATTTTTGCACGGCGACGATTACAATGCGGCGACGGCGACTATTTTCG
TGAAGTCTTGCCTTTTTTCACGATTGCATGGCGACGATTACAATGTGCGG
CGACGGCGACTATGTTCGTGAGGTCTTGTCTTTTTCACGATCGCACGGCG
ACGATTACAATTCTGCACGGCGACGATTACAATGCGGCGAAGGCGACTAT
TTTCGTGAAAGCTTGTATTTTTCACGATCGCACGGCGACCAATACATTGT
TTTTGCACGGCGACAATTACAGTGCGGCGACGGCGACTGTTATCGTGAGG
TCTTGATGATTACAATGCGGCGACGACGACTATTTCCGTAAAGTTTTGCC
TTTTTCACGATTGCACGGCGACGATTACTTCTTTTTGCACGACGACGATT
ACAATTTTACGACGGCGACGACGGCATTTCTCTTTAACTAACAATTCGAT
TACATTGGGAGTCACGACTTCCTGACGACCCATACGACGACGATTACTAC
GCTAACGCAGCCGTTGGCATGCCTTGTGTTCCCGACCCCCCATGATCAAA
TTGTAGCTCCGACTGGAGCTGGATGGCGTTCTCGACGTCATGCGCGACTC
CGACGGGCGGTTCACGTGGTACTCCTTGCGTGCCCATCTCGAGGCCGCCA
TGAAGATGGCCACGGACCTTAACCTCCTAGACGCGCGGAAGGTTCTGACC
GACACGATTGCGCGCGGTAATCGGCTGGTGGCCGCATGCAGCGACCCCGT
CATCGTGCTTGGGGTGTTCTCCAAGATGCTGCCGTGGGTGCACGGCGTGT
CCCAGGAAGTCTATGAAGTGGACTGTGCCGACCTGCGCAAGGTCACGTTG
CTGGCCCGCAACTTTTTCACCAACCATGGCGGGCGGGGCGGCGGCGGGTC
TGGCGGGGCCGGCTCCGGGAAGACACGCGGCTCCCGCCACCACTCCGGAG
CGGGGGGGCCCGTCCATCGCGGGCTCCCCGCACGGCAATGCGTTTTCCAC
AACGCATGCGGCTACCACGGCAGGCAGGACCCGCGTGGCGGGCACGGGCA
GAGGCCTGCCGAGCTGCTATGGTCGGCCCATCGCTCGTACGGGTAGGGTT
CGTGACGGTGGACGCGGCGGTGACCCAAGGGGGGCAGGGCCGGTACTCTA
CGCCGGAGAACGGACAATATCCGGACCCAGCGGTCCGCGCGGCATGATTT
GCTACAGCGGCAGCAGCTCGCCACGCCGGGCGATCCGAGGAGCCCCGACA
CGTGCCGCAAGTGCCGCGCGGCGGGACGTGACCCGCACCATATGTACCTA
ACCGGCGCATGGCAGATCTGCCCATGGTGCAAGTTGGCAGCCCGCAGGCA
GCCCGCCTGCACGAACGCCTTTGGGCCAGACGTTCAACATCGTCGGGAGC
GCGTGTTCGAGAAAGAAAGCACGCACGGGTGGACCAGGGAAACATCCGGA
CGCCGGCGTGGTTCGGCGCACTTACGGCGGCTGACAGGGGGCGATAGCGG
CGGTTGTCTCTCAGGGCGGCTTCGGAGATCACGGCGGGCTTAACAACGGG
AAAATCGTAGAATACAAAATGGACAATGAGCGCTTTCGAAAGCGGTCTCC
TATGTTCACCGTGCGCTGACTTCCTTGGGACGCTAGGTTGTTCAAAATGC
GCGTTTTGTTTTCATGTGTTGTGATTTGTGTTGTTTTCCATTTTCCCGAT
TCCGATTGGCACGCGGACCACCGTTGCTGCCGGCCCCGTGTGGCTGATAC
GGGGAGGGGGCGTGATAGCGCACCGTGTGCGAGCCGACGAACAGGTAATG
ATACGATTAGCCGAAGGCACAGTAGCATGTTTCTACCGCTCTCCGGACGG
TGTAGCGGTGACAGGATGGGTTTGACGGGGTAAGTGCAGGACGGCGGCCA
TTATCGACGGGGCCATACACGAGGTATGGACGTAGCGAGGCAAGGCCACC
CACCGTGTGGTGCCGGCGGGAAGAAGAGAAAAAACAAATACAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig707:12..4905+

>mRNA_P-littoralis_Contig707.1.1 ID=mRNA_P-littoralis_Contig707.1.1|Name=mRNA_P-littoralis_Contig707.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig707:12..4905+ (Pylaiella littoralis U1_48)
ATGCGCGACTCCGACGGGCGGTTCACGTGGTACTCCTTGCGTGCCCATCT
CGAGGCCGCCATGAAGATGGCCACGGACCTTAACCTCCTAGACGCGCGGA
AGGTTCTGACCGACACGATTGCGCGCGGTAATCGGCTGGTGGCCGCATGC
AGCGACCCCGTCATCGTGCTTGGGGTGTTCTCCAAGATGCTGCCGTGGGT
GCACGGCGTGTCCCAGGAAGTCTATGAAGTGGACTGTGCCGACCTGCGCA
AGGTCACGTTGCTGGCCCGCAACTTTTTCACCAACCATGGCGGGCGGGGC
GGCGGCGGGTCTGGCGGGGCCGGCTCCGGGAAGACACGCGGCTCCCGCCA
CCACTCCGGAGCGGGGGGGCCCGTCCATCGCGGGCTCCCCGCACGGCAAT
GCGTTTTCCACAACGCATGCGGCTACCACGGCAGGCAGGACCCGCGTGGC
GGGCACGGGCAGAGGCCTGCCGAGCTGCTATGGTCGGCCCATCGCTCGTA
CGGGTAG
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