mRNA_P-littoralis_Contig706.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig706.3.1
Unique NamemRNA_P-littoralis_Contig706.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig706.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig706contigP-littoralis_Contig706:12607..13184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size578
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791474.135335-UTR-P-littoralis_Contig706:12606..127841680791474.135335-UTR-P-littoralis_Contig706:12606..12784Pylaiella littoralis U1_48UTRP-littoralis_Contig706 12607..12784 -
1680791474.1570344-UTR-P-littoralis_Contig706:13123..131841680791474.1570344-UTR-P-littoralis_Contig706:13123..13184Pylaiella littoralis U1_48UTRP-littoralis_Contig706 13124..13184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791474.1473851-CDS-P-littoralis_Contig706:12784..131231680791474.1473851-CDS-P-littoralis_Contig706:12784..13123Pylaiella littoralis U1_48CDSP-littoralis_Contig706 12785..13123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig706.3.1prot_P-littoralis_Contig706.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig706 12785..13123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig706.3.1

>prot_P-littoralis_Contig706.3.1 ID=prot_P-littoralis_Contig706.3.1|Name=mRNA_P-littoralis_Contig706.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MNPCCWPRLVEIGDTCSQLVLSVSIVFRYVLSPPSPGLDLDQPHCLSRQL
ELLLTEPREIELGDGSCLDLLRSLTPSPRTPSFCLFTMLPSIVVCPGFCS
SCPSGVRRLTCS*
back to top

mRNA from alignment at P-littoralis_Contig706:12607..13184-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig706.3.1 ID=mRNA_P-littoralis_Contig706.3.1|Name=mRNA_P-littoralis_Contig706.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=578bp|location=Sequence derived from alignment at P-littoralis_Contig706:12607..13184- (Pylaiella littoralis U1_48)
GGATCACTGTTTCTCCCCAAAGCGACTGGAACGTTCACCAAGGACTCGAC
ATGGTGAGTGTATGAACCCTTGCTGCTGGCCTCGTCTGGTAGAAATAGGC
GACACGTGCTCGCAGTTGGTTTTGAGCGTGTCGATCGTTTTTCGATATGT
GCTCTCTCCACCATCACCAGGTCTGGACTTGGATCAACCGCATTGCCTAT
CGCGCCAGCTGGAGTTGCTCTTGACTGAGCCCCGGGAAATCGAACTCGGT
GATGGTTCTTGTCTTGACCTTTTGCGCTCCCTTACCCCCTCTCCCCGAAC
GCCTTCGTTTTGTCTCTTCACCATGCTGCCCAGCATAGTGGTCTGTCCTG
GTTTTTGTTCTTCATGCCCTTCCGGCGTCCGGCGTCTCACATGTTCATAA
GGGCGATCGTTCCTTCCCTCATGTCTTGACTGATTCCCTGGAAACCCCCG
ACATTGTTTAGTCATATATCGCACCTTAACTGTAAAATTGCTAAGGTCGT
GAACCTCCTCGACGACGTGAAGACCAAGTACACGGACGTCTCCATGGCCG
ACCTTATCGTCCTTGCGGGGAGTGTTGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig706:12607..13184-

>mRNA_P-littoralis_Contig706.3.1 ID=mRNA_P-littoralis_Contig706.3.1|Name=mRNA_P-littoralis_Contig706.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig706:12607..13184- (Pylaiella littoralis U1_48)
ATGAACCCTTGCTGCTGGCCTCGTCTGGTAGAAATAGGCGACACGTGCTC
GCAGTTGGTTTTGAGCGTGTCGATCGTTTTTCGATATGTGCTCTCTCCAC
CATCACCAGGTCTGGACTTGGATCAACCGCATTGCCTATCGCGCCAGCTG
GAGTTGCTCTTGACTGAGCCCCGGGAAATCGAACTCGGTGATGGTTCTTG
TCTTGACCTTTTGCGCTCCCTTACCCCCTCTCCCCGAACGCCTTCGTTTT
GTCTCTTCACCATGCTGCCCAGCATAGTGGTCTGTCCTGGTTTTTGTTCT
TCATGCCCTTCCGGCGTCCGGCGTCTCACATGTTCATAA
back to top