mRNA_P-littoralis_Contig705.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig705.18.1
Unique NamemRNA_P-littoralis_Contig705.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig705.18.1 vs. uniprot
Match: A0A6H5KJG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG0_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.370e-49
Identity = 125/195 (64.10%), Postives = 141/195 (72.31%), Query Frame = 1 
Query:  265 AASYDACFRGLLRSGLVAGLALLDAVGGHPLYENRIDERLLPRHRPXXXXXXXXXXXXXXXXXXXXXXXXXRQRDRPKDYRCCC--------DGLVSPSEGRQLVAAVKGLTDD--GLCRREA---LTCMGMPFRVFGGTPLGIYAVGVGRRTGLIARTLPLVGLLVVFYRRPHMPQQVVPCVENFVDRFWTDVQ 810
            +ASYDA F+GL+ SG +AGLALLDA  G PLYENR+D+RL    RP XXXXXXXXXXXXXXXXXXXXXX   + D  +              DGLVS SEG++LVAAVK LTDD   +CR++    LTCMG+PFRVFGGTPLGIYAVG GRR GL+ R LP VG LVV YRRPH+PQQVV  VE FVD FW   Q
Sbjct:   83 SASYDALFQGLVGSGCIAGLALLDASRGRPLYENRLDDRL---PRPPXXXXXXXXXXXXXXXXXXXXXXEDNKNDGKEVVGARGGGEGPGQRDGLVSSSEGQRLVAAVKSLTDDDDAICRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLVVRALPRVGFLVVVYRRPHLPQQVVGEVEKFVDDFWAGTQ 274
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig705.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJG0_9PHAE1.370e-4964.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig705contigP-littoralis_Contig705:115159..118310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size820
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002620.1
Cds size819
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791473.8114738-CDS-P-littoralis_Contig705:115158..1152421680791473.8114738-CDS-P-littoralis_Contig705:115158..115242Pylaiella littoralis U1_48CDSP-littoralis_Contig705 115159..115242 +
1680791473.822693-CDS-P-littoralis_Contig705:116128..1165961680791473.822693-CDS-P-littoralis_Contig705:116128..116596Pylaiella littoralis U1_48CDSP-littoralis_Contig705 116129..116596 +
1680791473.8341296-CDS-P-littoralis_Contig705:117142..1173271680791473.8341296-CDS-P-littoralis_Contig705:117142..117327Pylaiella littoralis U1_48CDSP-littoralis_Contig705 117143..117327 +
1680791473.8449507-CDS-P-littoralis_Contig705:118227..1183091680791473.8449507-CDS-P-littoralis_Contig705:118227..118309Pylaiella littoralis U1_48CDSP-littoralis_Contig705 118228..118309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig705.18.1prot_P-littoralis_Contig705.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig705 115159..118309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig705.18.1

>prot_P-littoralis_Contig705.18.1 ID=prot_P-littoralis_Contig705.18.1|Name=mRNA_P-littoralis_Contig705.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=273bp
CSHGQQQHSVVLGRGKRRCCDWKTQPTRTAEPPATGNQLTNRWIDWVLLT
NKIVYHRHQRHHHHHHHHHHHHHHTTMRVLQHNTGCTTAASYDACFRGLL
RSGLVAGLALLDAVGGHPLYENRIDERLLPRHRPPPPCCPPVTMRNRKEE
GEEEKEEEERQRDRPKDYRCCCDGLVSPSEGRQLVAAVKGLTDDGLCRRE
ALTCMGMPFRVFGGTPLGIYAVGVGRRTGLIARTLPLVGLLVVFYRRPHM
PQQVVPCVENFVDRFWTDVQDFG
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mRNA from alignment at P-littoralis_Contig705:115159..118310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig705.18.1 ID=mRNA_P-littoralis_Contig705.18.1|Name=mRNA_P-littoralis_Contig705.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3152bp|location=Sequence derived from alignment at P-littoralis_Contig705:115159..118310+ (Pylaiella littoralis U1_48)
TGTTCTCACGGACAACAGCAGCACTCTGTGGTTCTTGGAAGGGGAAAACG
ACGATGTTGCGACTGGAAAACGCAGCCGACGAGGGTAAGGGACGGTTGAG
CCCTTCTCGCAGTAAAAATCTGAAACAAGCTACACATGAAGAGACAACTG
CTGCTGTAATGCAGCGGGTGAGATGGAGGGAAAAAACAAACATCCCTGTC
TGTGTGACCTTCCGTGTGCTGTGTGACCGACACCGGCTGGTGCACCAACT
CCATTCCCCGAGAGATGAAGACTGAATGAAGACTGGGGTTCCCAGAATAA
AAATGGGAGGAAATCAGGAAAACGCACACTCTCAACATGACATGATGATA
TGAAATGTGTGTCCCTCTGTATCATATCACAGCATACAACCGATACTGGT
GTATGATATCATTATAATACCAGGTAGAGGCTTTCATCCATCCCCCGGAA
GTCCGCTTTGCTTGTCGAAGATGCCTTCGAGGCGCTGGATGCTCGATCAT
GTAATTCGCTTCGTACAAGAAGAGGAAAATGTCGTAGACCTGATCACAAG
TCGACCCGCTACATGCATGCTACAGACCTGATCACAAGCCGCGAAACTTG
CGCTGAAACACCCACCGCCCCGGTGCCGCTAAACCGCCGACCCCCTGTAC
TGTAGTCACACACAAAGACACACAGCAGTCCGATTGACCCTTTGACCCTG
GGTTCTCTGCTTTAGACTTACTTCGTTAGTACTTCGAAGTACTCGGAGTA
TATAACATGAACAACATACCCCCCCACCCCCCTACATCCAAACCACATAA
AAATAGCACCCGAAATACTACAGCAACGAAGCTATGGAAAACAGGGGGGA
AATCTACCACTTCAAGCAGCATCATATCCATTCACCCAAGCATTTGAATG
ATCACCATTCCGTGCCCCCCCCTCAATGAATCCTCCGATCCTCGTCGAAT
TCCTTCCGAGGTTTTAACAGACAGCCGAACCACCCGCCACCGGCAACCAA
CTAACCAACCGCTGGATTGACTGGGTTCTTCTCACAAACAAGATTGTTTA
TCATCGCCATCAACGCCATCACCACCACCATCATCATCATCACCATCATC
ATCACCACACGACGATGCGTGTGCTGCAGCATAATACCGGTTGCACGACC
GCCGCCTCGTACGACGCTTGCTTTCGGGGGCTTCTCCGGAGCGGCCTCGT
CGCGGGGCTGGCCTTGCTGGACGCCGTGGGAGGACACCCCCTGTACGAGA
ACCGGATCGACGAGCGGTTATTGCCCCGCCACCGCCCTCCTCCTCCGTGT
TGTCCTCCCGTGACAATGAGAAATAGGAAGGAGGAGGGGGAGGAGGAGAA
GGAGGAGGAGGAGCGGCAGAGAGATCGGCCAAAGGACTACCGCTGCTGCT
GCGACGGCTTGGTGTCTCCTTCCGAAGGGCGGCAATTGGTGCGTGGAGGT
GGAATGTTAGTACTGTAACTGGGTGGGTGGGTGGGTGGGCGGGTTTGACA
CTCTCACGGCAATTCATGTGTCCAGCGCGGACAAAAACTGCTCTATCTCC
GAGAGAGTATCGATCAGTTTTGGTGTGGGGGGGGGGGCGACCCGAACCGA
TGGTGGTGGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTTTACTTC
CCATTTATTCCGGGCACCAGTCTTCATCCTTCGGTATGAAGTAAGTGCAT
CAGCCGGGGTCACACACAAGGACAATGAATGTATGATAGGTCAGGCAGGA
TTTCCATTTGTTTTCCCTCCAACACTTCTGTGCATGATGTGTATGATACA
TACGGTACATCTGTACGCACACGCACACACACATAATAACGCACACACAC
ACACGCACACACGCACTCACGCACACACGCACACACACACACGCACACGC
ATGCACCCGCGCGCATGCGTATGTGCATGCATAGGTGGCGGCTGTGAAAG
GCTTGACAGACGACGGCCTCTGCCGTCGAGAAGCTCTGACGTGCATGGGG
ATGCCCTTCCGGGTCTTCGGCGGCACGCCCCTCGGCATCTACGCGGTTGG
CGTCGGCAGGCGGACCGGCTTGATAGCGCGAACTCTCCCTCTGGTGGGCC
TCCTGGTGGTTTTCTACAGGTAGTAGATATGATATGGCATGATGTCGAGT
GATATTTTATGCACTCATGTACTGATATCACAACAGGAATGAATGGCGTC
GGGTGGTGAGACCAGCCAGCCGTGAAATAGAAGACACCACGCGAACAAAA
CACGTGTATGGACGGCGGCAAGAACTCAACGAGTTTCTTGACAACCGCAG
TAGTACCAGGTATACATCACGTCAACAAAAATAAGCAAAGAAAGCGTTTG
GTTTTGTTTTCTCTATCATTTGTGACCACGGAAACTTTTTTTGACAATTG
TAGCCTCTCTCTGCGCACAGCAGTAATGACGTGGTCGAAATACGACTGAC
TGCGTTCGGTGGTTGTGGCAGGAAAGTCGGGCGGAAAGGCGCGCTTGTCT
CCTGCGAAGTAGTTCGCGAGCGAACTGAGCGGGATCAAAACCATTCGTGC
TTTTTTTTTTCGCATGATGTTGCGAGCGGGGGGTTAGGGGGTTGGCTGGT
AGCAAGGACGAACAGACGGACGGGTCATTTTTTTTTTTCCGTCTACAGGT
AGTAGTTTTTGCTGTTTTGGGCAGGGATGCGGGGAGGGTCTACTGCTGCT
GTTGCTGCTGTTGCTGTATTGCAACTCACATCGCGGCGGCCGTGCACAGC
ATTTGTTGAGTACAAGTACACCCCCTGGCCCTTCCATACGACACGCACGT
CCCGTCCCGGGTTTGTGTACAGTAGAGAGACCATCGCGACGGTCAATCGA
CGGGAACAAAGAGCGAACGCACGACCACGGCCGTGCATGATCTGAAGATG
GTATTATCGTGTTTGTAGTATCTCCCCGCGCCTCCGTCGCGTCTGTGTGC
ATGTAAATGTTGTATTTGCTGCTGCTGCTTGTGACCTGCTACTACTACTG
CGCGCTTGTGATGTGGCAGACGGCCGCACATGCCGCAGCAAGTTGTGCCA
TGCGTGGAGAACTTCGTTGATCGTTTCTGGACGGACGTCCAAGATTTCGG
GT
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Coding sequence (CDS) from alignment at P-littoralis_Contig705:115159..118310+

>mRNA_P-littoralis_Contig705.18.1 ID=mRNA_P-littoralis_Contig705.18.1|Name=mRNA_P-littoralis_Contig705.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=819bp|location=Sequence derived from alignment at P-littoralis_Contig705:115159..118310+ (Pylaiella littoralis U1_48)
TGTTCTCACGGACAACAGCAGCACTCTGTGGTTCTTGGAAGGGGAAAACG
ACGATGTTGCGACTGGAAAACGCAGCCGACGAGGACAGCCGAACCACCCG
CCACCGGCAACCAACTAACCAACCGCTGGATTGACTGGGTTCTTCTCACA
AACAAGATTGTTTATCATCGCCATCAACGCCATCACCACCACCATCATCA
TCATCACCATCATCATCACCACACGACGATGCGTGTGCTGCAGCATAATA
CCGGTTGCACGACCGCCGCCTCGTACGACGCTTGCTTTCGGGGGCTTCTC
CGGAGCGGCCTCGTCGCGGGGCTGGCCTTGCTGGACGCCGTGGGAGGACA
CCCCCTGTACGAGAACCGGATCGACGAGCGGTTATTGCCCCGCCACCGCC
CTCCTCCTCCGTGTTGTCCTCCCGTGACAATGAGAAATAGGAAGGAGGAG
GGGGAGGAGGAGAAGGAGGAGGAGGAGCGGCAGAGAGATCGGCCAAAGGA
CTACCGCTGCTGCTGCGACGGCTTGGTGTCTCCTTCCGAAGGGCGGCAAT
TGGTGGCGGCTGTGAAAGGCTTGACAGACGACGGCCTCTGCCGTCGAGAA
GCTCTGACGTGCATGGGGATGCCCTTCCGGGTCTTCGGCGGCACGCCCCT
CGGCATCTACGCGGTTGGCGTCGGCAGGCGGACCGGCTTGATAGCGCGAA
CTCTCCCTCTGGTGGGCCTCCTGGTGGTTTTCTACAGACGGCCGCACATG
CCGCAGCAAGTTGTGCCATGCGTGGAGAACTTCGTTGATCGTTTCTGGAC
GGACGTCCAAGATTTCGGG
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