mRNA_P-littoralis_Contig705.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig705.17.1
Unique NamemRNA_P-littoralis_Contig705.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig705.17.1 vs. uniprot
Match: D8LK93_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK93_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.980e-43
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 3 
Query:  414 ATVEKYPSYIRREKSTTGPTVAVGGGCNEEAPEEAERETEKGYEGGDRVRLLVGSFNVGNSPLTVLAPWLPYGGKGFDLIVIGLQESTYKAPRAGRDS-PFQRTYSLSPTNSLSPVKTG 767
            ATVE YPSY+R       P  A  GG  +E  E   RETE+GYEGGDRVRLLVGSFNVGNSPLT LAPWLPYGGKGFDLIV+GLQESTY+ PR  RDS PFQRT SLSP+NSLSP+KTG
Sbjct:   56 ATVELYPSYVRP------PPGADDGGKQQEGQE---RETERGYEGGDRVRLLVGSFNVGNSPLTDLAPWLPYGGKGFDLIVVGLQESTYRPPRGARDSSPFQRTLSLSPSNSLSPIKTG 165
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BLAST of mRNA_P-littoralis_Contig705.17.1 vs. uniprot
Match: A0A7S3YA27_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA27_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 5.070e-10
Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = 3 
Query:  501 EAPEEAERETEKGYEGGDRVRLLVGSFNVGNSPLTVLAPWLPYGGKGFDLIVIGLQESTYKAPRAG 698
            E  ++A+  ++  Y GG  ++LL+G+FN+GN+ +  +  WLPY G+G+D+I IGLQEST+K   AG
Sbjct:   16 EGSQDADASSQPLYLGGSEIQLLIGTFNMGNAEIENIGEWLPYEGEGYDVIAIGLQESTFKPVGAG 81
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BLAST of mRNA_P-littoralis_Contig705.17.1 vs. uniprot
Match: A0A1V9ZWR6_9STRA (Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWR6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.460e-5
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 3 
Query:  558 VRLLVGSFNVGNS-PLTVLAPWLPYGGKGFDLIVIGLQESTYK 683
            +++L+GS+NVGN  P T + PWLP GG GFD+I +GLQES++K
Sbjct:   30 LQVLIGSWNVGNKMPPTSVDPWLPQGGGGFDVIAVGLQESSFK 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig705.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LK93_ECTSI2.980e-4373.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S3YA27_HETAK5.070e-1045.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9ZWR6_9STRA2.460e-558.14Phosphatidylinositol-3,4,5-trisphosphate 5-phospha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig705contigP-littoralis_Contig705:110361..114559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra96407
PFAMsAminotran_3,C2,Exo_endo_phos,Kinesin
Model size1005
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue0.000155
EggNOG OGsCOG0160@1|root,COG5059@1|root,COG5411@1|root,KOG0245@2759|Eukaryota,KOG0565@2759|Eukaryota,KOG1405@2759|Eukaryota,3QD20@4776|Peronosporales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002530.1
DescriptionBelongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
Cds size801
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791473.7342727-CDS-P-littoralis_Contig705:110360..1106811680791473.7342727-CDS-P-littoralis_Contig705:110360..110681Pylaiella littoralis U1_48CDSP-littoralis_Contig705 110361..110681 -
1680791473.7483761-CDS-P-littoralis_Contig705:111007..1111131680791473.7483761-CDS-P-littoralis_Contig705:111007..111113Pylaiella littoralis U1_48CDSP-littoralis_Contig705 111008..111113 -
1680791473.7590113-CDS-P-littoralis_Contig705:113982..1143561680791473.7590113-CDS-P-littoralis_Contig705:113982..114356Pylaiella littoralis U1_48CDSP-littoralis_Contig705 113983..114356 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791473.7750978-UTR-P-littoralis_Contig705:114356..1145591680791473.7750978-UTR-P-littoralis_Contig705:114356..114559Pylaiella littoralis U1_48UTRP-littoralis_Contig705 114357..114559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig705.17.1prot_P-littoralis_Contig705.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig705 110361..114356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig705.17.1

>prot_P-littoralis_Contig705.17.1 ID=prot_P-littoralis_Contig705.17.1|Name=mRNA_P-littoralis_Contig705.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=267bp
MNRLEGGRDSPEEQPEQGSLSAEPLLPKQEKGRGSNTSREAKVQGDTVGS
ASEATRGDSGGAAEAASTTAATVEKYPSYIRREKSTTGPTVAVGGGCNEE
APEEAERETEKGYEGGDRVRLLVGSFNVGNSPLTVLAPWLPYGGKGFDLI
VIGLQESTYKAPRAGRDSPFQRTYSLSPTNSLSPVKTGGGEGRSPGRSPA
ARWAEMHGGEDIDGTHTPPSFGGRFLTSSAAGFSPLLSPFPLLSSSFLRH
KRRGSSGGVELRATAAA
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mRNA from alignment at P-littoralis_Contig705:110361..114559-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig705.17.1 ID=mRNA_P-littoralis_Contig705.17.1|Name=mRNA_P-littoralis_Contig705.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4199bp|location=Sequence derived from alignment at P-littoralis_Contig705:110361..114559- (Pylaiella littoralis U1_48)
TGTCATCCCATGTTCTCTGGCACACTAGTCTGCAAACTACAGGCTAGGCC
CATCGACGGGGTCACACAGGAGGAAGGTCAACACTGTGTGTTTTGTTGTG
TTTGTTTTTCGTTTTCTGTTGTTGTTTTATTTTGCTTCACACGTTGGACT
CCCTCATACAACACACGAGCACGCTCGACACTCGCACGCGAGCCTCGTGC
GAGATGAATCGCCTCGAAGGAGGCAGAGACTCCCCAGAAGAGCAGCCAGA
ACAAGGTTCACTTTCTGCGGAGCCCTTATTACCGAAACAAGAGAAGGGAC
GCGGTAGTAACACGAGCAGAGAAGCTAAGGTCCAAGGTGACACGGTAGGG
TCGGCTTCCGAGGCAACACGAGGTGATAGCGGTGGTGCTGCGGAGGCTGC
TAGTACCACAGCTGCGACTGTGGAGAAGTACCCCTCATACATCCGGCGCG
AGAAAAGCACTACGGGCCCGACGGTGGCGGTCGGCGGAGGTTGTAATGAG
GAGGCGCCGGAGGAGGCAGAGCGAGAGACAGAGAAGGGCTATGAAGGCGG
AGATCGGGTCAGGCTTCTAGTGGGGAGGTATGGTATCATACGTATTATAT
TGTACTTCTATGATATTACCGTACAGCAGTACATGTTGCGTGTTGTGCGT
TGAACATTATGAAAGGAGATGTGAGATCACATCAGATGGCACAGCAGAAA
GAGCGCGAACTTGTACTGCTGTAGTGAGAAAGGCACGCCCTTCTTCTGAA
CTACTTGACGTACACCTGTCTTGTGGTCAGAAAGCCGGTGTATAATTTGA
CGGCCCATTCCATAGTACTTCGAAGTAGTGTCTATGGCAACCGTCGTCTA
CGGTTTGGCGTAATGATGCCAGCCCCTTTTCTCCGCAATCAACGATAACA
AGTGTACTTGTATGTAGAATACATCATTGCATTACTACTGCTGTACCGTA
TTCTACACAAGATACCACACCCCGTGTTAAGCTTTTTGCATTCCGTATAG
CTCCACAACCAGGAGGGTGCCACTGCCGAAAAGGGTGGTTTTGGAAAGAT
CTCGTCGAGAGCTTTCGTATGACGGGCTGTTTGGTGTTCGCATCCTCCTG
GTTGTGGAGCAATACGGAATGCAAAAACCTAACACGGGGTGTGGTATCTT
GTGTAGAATACGGTACTCGTACTTCGGATTTCTCCTCGGTACCTTCTAAC
AGCAGTATGTCTGTAGCACCTCTCCGGTCATGAATGATTTCCGTGGTCAC
AGGCTGCCTGTCCAAAAGGGGCATATAATTCGCGGGAGATCCCACCAACC
CACAAGAGATACAAGGAAACTCCCATCAACACAAAACGGACCCCGAAAGA
TCACACAGGACACAGGGCTTCGTTACAAAAGTGGAACAAAAAAAAACTCC
AAATCAAAGGGAGAGGCGAACACAATGATGTCTTGGTAAGAAAAAATAAA
AAATCAAAGTAAAAAATTAAGTAGCAACAGCATTGACAAAAAAAGTCGAT
TTCAGGTGCCAGGTGCCGAGAGAAACCGAAAAATGGGCATCGGGGTTGCA
ACGTCAGGTGCCGAGAGCCGAGGGAAACAGAAAGACGGGCATCGGAGGGG
GTAACTTTGGTTGCAACTTTCTCCACCGGCCTAGCGAACAAGTTAAGGAA
ACGCGAACAAACGTGAAAGGGCAACAAAGGCACAAGGGCAGAGAGAACAC
AAAAAAAATGGACACACGTTTGTATAATAACTCAGGCCACCACGGTATCA
GGGGGGGCGGGGCGCCCGAGACCGGGGGGATAAAATAAGAACAGTGAGAG
CTGTCACAGCAGTGTGAGTCAATCTGGTGTGTATATATGCCGTGCTGCCC
TCTCCATCAATTCCCTCTAGCTCTGCCGTCGTTGTCCCTCATCCTTCCGG
GTTGTCCTTGCGGGTACTCTTTATAATTTTATCTTTCTTACAAACACACC
AATGTGTTCGCCTCTCTAAACAGACGAGGACCCGGGTGGAGATTGCAGCT
ATTTTATGTCCACCCGGCTGGTGCACTCACTTCATACCGAAAGGTGTACT
GTAGACTGGTTCCTAGAATAAATGGGAAGAAAACACACACGTATCATATC
ATACGATACGCACATTCTATATCCAACCAAACATGACGATCATAACGCCC
AGGACGATGCTGACAGCGAAAACATAGGCCGCACATACTTAAGGCGGGGA
ATGGGGTGCCAATGACTTGCAGGCTTTCAACAAGCGCCTGATAATTCTGG
GTTTCCAAATAGACTAGTCTATATCTGTAGTACGAATCTACCACCGCAGA
ATGTTCCCGGAGGCAGTCGTTGTGAGCAATAACTAGTATCTTGGATCCAA
GTCCTTGCGACATGCTACAGATTCACCGTTCCTGATTTTTGCAACGAGCC
CTCCTTCATCGAGTTCTGCAAGCTACGAGACGTGGTTCGGATGCTGCTGT
AGCAGCCATATTTTTGGACGCTTCCGGCACAGAGCATCCGAAAATACGGG
GCATTCGTGAGTACCTTCGTACGACCTCCAAATCAATCACGGCAATGGGT
AGGGTACGTGAGGAGAGCATCGTGCGGAGTTAGCGGTCGCAGGTACTCAC
GTACGCTTTGCTTTTTTCTGGTATGATACTTGTACCTGTACATGAAAGGC
CAAAAAAAGGTACAGTATGGTCCTGCCGTACATCTCCTCTTGCACACTGT
GTATTGTGTATATACAAATAACTGAAAAGCTCGTGTGTGACCGTCCTTCT
GTGTGGCCCCGGCTGGTGCACCCACCGCCTCGTACCGAAAGATGCAGACT
GGCTCCCGGAAGAACAAATGGGACGAAAACACACACACAAGCTTTTAACA
CAACACAGCAGCATCCGTTCGACTTCGATACAACGTCCCACCGGAGCAAT
AACCACTCGTGGCTGAAGATTGCAGGAGTTGCTGTCTAGAGTGCTCCCTG
CAACGCAACGTACGATCGCTCCAGTACGACAGTAGTGGAAAAAAAAACTG
AGAAAACACATCATTACACGTTACCGGTACTACGCCGTGTCCGAAGTGCT
GTCAGAATGATAAGACCCGCGGTCAGTGCGACAGGAAAATCATCAATCCA
CGAAGATAATCGACAATCGCCAAGCCTTTTCCCGAGTTTTCTCTCTGTAC
AAGAAGAAGGTGTGGTGGGGCACAGCAGTAGATCACGCTGTTTAAATTGC
GGAGTTATTTATTTTTCTTTCTCATCGCTGCCGTCGTCGACGTCCACTGA
CGGTTTGCTGCGGTACATACTTGTACGCGTAAAAATATCGTTGGGCGGTT
TCTATTTTCTGCACCATCTCCATTATTGTTCCTGTAATATCAAATCATAC
CCCATTGTTCACAATACATGAAAGAGTCAAAATACGTATTCTTCTGTTTT
TTGTTTTCTCGGCGACGCTTCAACAAAAAACAAAACAAAAAACCAGTTTC
AACGTTGGCAACAGTCCCCTGACGGTCCTCGCGCCATGGCTGCCTTATGG
AGGGAAGGGCTTCGACCTCATCGTCATCGGCCTCCAGGAGAGCACCTACA
AGGTAAATAAAGCACCCAAGGGATGAGCACCGTATCAAACACCGCTATCA
TACTGGATCTCGGTCGTGGAGACCCCCCTCCCCCACAATCCCTCCTGTAG
GAACCCCACCTCCTTTGAGACCCCGGCTTATATGCGCCCAGACTATTTGT
ATACCAAAATGCGCATACCGGCGGCCAGAGTACCGGCAGATGGGAGGACA
ACACACTCCTGCACACACACTTCACTTTCTACTCCCCAACCACAGACCAT
GCTTCTTCTCTCCCTCCCCCCCCCACTTCCTTTCATACGTATATGAAACG
AAAAACACTTAAACCAACCGCACTGCAGGCCCCCAGGGCCGGGCGAGACT
CCCCGTTCCAGCGCACCTACAGCCTCAGCCCGACTAACAGCCTGTCCCCG
GTGAAGACCGGGGGAGGGGAGGGGCGCTCCCCTGGGCGCTCCCCTGCGGC
GCGATGGGCGGAGATGCACGGTGGGGAGGACATCGACGGTACGCACACGC
CTCCTTCCTTCGGCGGCAGGTTCCTGACGTCCTCGGCGGCGGGGTTCTCG
CCGCTCCTGTCCCCGTTCCCGCTTCTGTCGTCCAGCTTTCTTCGTCACAA
GCGCCGAGGCTCGTCCGGGGGTGTGGAGCTGCGCGCGACTGCCGCTGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig705:110361..114559-

>mRNA_P-littoralis_Contig705.17.1 ID=mRNA_P-littoralis_Contig705.17.1|Name=mRNA_P-littoralis_Contig705.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=801bp|location=Sequence derived from alignment at P-littoralis_Contig705:110361..114559- (Pylaiella littoralis U1_48)
ATGAATCGCCTCGAAGGAGGCAGAGACTCCCCAGAAGAGCAGCCAGAACA
AGGTTCACTTTCTGCGGAGCCCTTATTACCGAAACAAGAGAAGGGACGCG
GTAGTAACACGAGCAGAGAAGCTAAGGTCCAAGGTGACACGGTAGGGTCG
GCTTCCGAGGCAACACGAGGTGATAGCGGTGGTGCTGCGGAGGCTGCTAG
TACCACAGCTGCGACTGTGGAGAAGTACCCCTCATACATCCGGCGCGAGA
AAAGCACTACGGGCCCGACGGTGGCGGTCGGCGGAGGTTGTAATGAGGAG
GCGCCGGAGGAGGCAGAGCGAGAGACAGAGAAGGGCTATGAAGGCGGAGA
TCGGGTCAGGCTTCTAGTGGGGAGTTTCAACGTTGGCAACAGTCCCCTGA
CGGTCCTCGCGCCATGGCTGCCTTATGGAGGGAAGGGCTTCGACCTCATC
GTCATCGGCCTCCAGGAGAGCACCTACAAGGCCCCCAGGGCCGGGCGAGA
CTCCCCGTTCCAGCGCACCTACAGCCTCAGCCCGACTAACAGCCTGTCCC
CGGTGAAGACCGGGGGAGGGGAGGGGCGCTCCCCTGGGCGCTCCCCTGCG
GCGCGATGGGCGGAGATGCACGGTGGGGAGGACATCGACGGTACGCACAC
GCCTCCTTCCTTCGGCGGCAGGTTCCTGACGTCCTCGGCGGCGGGGTTCT
CGCCGCTCCTGTCCCCGTTCCCGCTTCTGTCGTCCAGCTTTCTTCGTCAC
AAGCGCCGAGGCTCGTCCGGGGGTGTGGAGCTGCGCGCGACTGCCGCTGC
A
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