mRNA_P-littoralis_Contig705.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig705.5.1
Unique NamemRNA_P-littoralis_Contig705.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig705.5.1 vs. uniprot
Match: D8LKF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF8_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.760e-58
Identity = 94/114 (82.46%), Postives = 101/114 (88.60%), Query Frame = 1
Query:    1 RWKKVLQPGLNKGHWTAQEDEVVRSAVTKAEAAGS--WSRVAGLLPGRLGKQCRERWCNHLDPSVKKTKWTTHEDEVLFNAQRFFGTRWCEIAKFLPGRTENAVKNRYNSSARQ 336
            RWKKVLQPGLNK HWT +EDE+VR AV  A+A G+  WS VA LLPGRLGKQCRERW NHLDP+VKKT+WT HEDEVLFNAQ FFGTRWCEI+KFLPGRTENAVKNRYNSSARQ
Sbjct:  293 RWKKVLQPGLNKRHWTPEEDEIVRGAVLSAQAIGAVKWSLVAVLLPGRLGKQCRERWFNHLDPTVKKTEWTPHEDEVLFNAQAFFGTRWCEISKFLPGRTENAVKNRYNSSARQ 406          
BLAST of mRNA_P-littoralis_Contig705.5.1 vs. uniprot
Match: A0A6H5LA90_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA90_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 6.020e-58
Identity = 93/114 (81.58%), Postives = 100/114 (87.72%), Query Frame = 1
Query:    1 RWKKVLQPGLNKGHWTAQEDEVVRSAVTKAEAAGS--WSRVAGLLPGRLGKQCRERWCNHLDPSVKKTKWTTHEDEVLFNAQRFFGTRWCEIAKFLPGRTENAVKNRYNSSARQ 336
            RWKKVLQPGLNK HWT +EDE+VR  V  A+A G+  WS VA LLPGRLGKQCRERW NHLDP+VKKT+WT HEDEVLFNAQ FFGTRWCEI+KFLPGRTENAVKNRYNSSARQ
Sbjct:  293 RWKKVLQPGLNKRHWTPEEDEIVRGTVLSAQAIGAVKWSLVAMLLPGRLGKQCRERWFNHLDPTVKKTEWTPHEDEVLFNAQAFFGTRWCEISKFLPGRTENAVKNRYNSSARQ 406          
BLAST of mRNA_P-littoralis_Contig705.5.1 vs. uniprot
Match: F0Y9B4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9B4_AURAN)

HSP 1 Score: 159 bits (402), Expect = 6.140e-48
Identity = 72/113 (63.72%), Postives = 84/113 (74.34%), Query Frame = 1
Query:    1 RWKKVLQPGLNKGHWTAQEDEVVRSAVTKAEAAG-SWSRVAGLLPGRLGKQCRERWCNHLDPSVKKTKWTTHEDEVLFNAQRFFGTRWCEIAKFLPGRTENAVKNRYNSSARQ 336
            RW KVL+PGL+KG WTA ED++V+  V +  A    WS +A  LPGR+GKQCRERW NHLDP +KK  WT  ED +LF  QR  G RW EIAK LPGRTENAVKNR+NSSAR+
Sbjct:   41 RWNKVLRPGLSKGPWTADEDKIVKDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPEIKKGDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARK 153          
BLAST of mRNA_P-littoralis_Contig705.5.1 vs. uniprot
Match: A0A836C844_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C844_9STRA)

HSP 1 Score: 159 bits (402), Expect = 6.530e-48
Identity = 75/116 (64.66%), Postives = 87/116 (75.00%), Query Frame = 1
Query:    1 RWKKVLQPGLNKGHWTAQEDEVVRSAVTKAEAAG----SWSRVAGLLPGRLGKQCRERWCNHLDPSVKKTKWTTHEDEVLFNAQRFFGTRWCEIAKFLPGRTENAVKNRYNSSARQ 336
            RW KVL+PGL+KG WT  ED VVR +V   EA G     WS VA  LPGR+GKQCRERW NHLDP++K++ WT  ED V+F AQ   G RWCEIAK LPGRTENAVKNR+NSSA++
Sbjct:   43 RWNKVLRPGLHKGPWTETEDRVVRESV---EAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQK 155          
BLAST of mRNA_P-littoralis_Contig705.5.1 vs. uniprot
Match: F0Y5J6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5J6_AURAN)

HSP 1 Score: 158 bits (400), Expect = 2.670e-47
Identity = 69/115 (60.00%), Postives = 90/115 (78.26%), Query Frame = 1
Query:    1 RWKKVLQPGLNKGHWTAQEDEVVRSAVTKAEAAGS-----WSRVAGLLPGRLGKQCRERWCNHLDPSVKKTKWTTHEDEVLFNAQRFFGTRWCEIAKFLPGRTENAVKNRYNSSA 330
            RW KV++PGLNKG W+A+EDEVV+S V K ++  +     W+ +A +L GRLGKQCRERW NHLDP++KK +W  HE+  LF+ Q+ +G RWCEIAK LPGR+ENA+KNR+NSSA
Sbjct:   62 RWTKVIKPGLNKGPWSAEEDEVVKSNVMKMQSESNEGVVKWAEIAKILKGRLGKQCRERWFNHLDPTIKKGEWEPHENRTLFDLQQQYGNRWCEIAKALPGRSENAIKNRWNSSA 176          
BLAST of mRNA_P-littoralis_Contig705.5.1 vs. uniprot
Match: A0A835YLN0_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN0_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.530e-46
Identity = 72/113 (63.72%), Postives = 86/113 (76.11%), Query Frame = 1
Query:    1 RWKKVLQPGLNKGHWTAQEDEVVRSAVTKAEAAG-SWSRVAGLLPGRLGKQCRERWCNHLDPSVKKTKWTTHEDEVLFNAQRFFGTRWCEIAKFLPGRTENAVKNRYNSSARQ 336
            RWKK L+PGL+KG WT  ED VVR +V +   A   WS +A  LPGR+GKQCRERW NHLDP++K++ WT  ED V+F AQ   G RWCEIAK LPGRTENAVKNR+NSSA++
Sbjct:   82 RWKKTLRPGLHKGAWTEAEDRVVRESVEECGIAKVKWSTIAARLPGRIGKQCRERWFNHLDPALKRSTWTPEEDTVIFEAQARLGNRWCEIAKLLPGRTENAVKNRFNSSAQK 194          
BLAST of mRNA_P-littoralis_Contig705.5.1 vs. uniprot
Match: A0A6U4HUA2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HUA2_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.250e-45
Identity = 74/113 (65.49%), Postives = 85/113 (75.22%), Query Frame = 1
Query:    1 RWKKVLQPGLNKGHWTAQEDEVVRSAVTKAEAAG-SWSRVAGLLPGRLGKQCRERWCNHLDPSVKKTKWTTHEDEVLFNAQRFFGTRWCEIAKFLPGRTENAVKNRYNSSARQ 336
            RW KVL+PGL+KG W A EDEVVR  V +       WS +A LLPGR+GKQCRERW NHLDPS+ K  WT  ED ++F AQ+ FG RWCEIAK LPGRTEN VKNR+NSSAR+
Sbjct:  283 RWNKVLKPGLHKGPWQAAEDEVVRDMVIRHGVGKVKWSDIAALLPGRIGKQCRERWFNHLDPSISKAPWTEEEDTIIFEAQQIFGNRWCEIAKLLPGRTENMVKNRWNSSARK 395          
BLAST of mRNA_P-littoralis_Contig705.5.1 vs. uniprot
Match: D7FRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA0_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.460e-44
Identity = 73/113 (64.60%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 RWKKVLQPGLNKGHWTAQEDEVVRSAVTKAEAAG-SWSRVAGLLPGRLGKQCRERWCNHLDPSVKKTKWTTHEDEVLFNAQRFFGTRWCEIAKFLPGRTENAVKNRYNSSARQ 336
            RW KVL+PGL+KG WT +ED +VR  V  + A    WS VA  LPGR+GKQCRERW NHLDPS+KK +W+  ED ++F AQ + G RWCEIAK LPGRTENAVKNR+NSSAR+
Sbjct:  136 RWNKVLRPGLHKGPWTEEEDSIVRECVEHSGAQKVKWSVVASRLPGRIGKQCRERWFNHLDPSIKKGEWSPEEDRIVFGAQAYMGNRWCEIAKLLPGRTENAVKNRFNSSARK 248          
BLAST of mRNA_P-littoralis_Contig705.5.1 vs. uniprot
Match: A0A7S2BQG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG7_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.850e-44
Identity = 68/113 (60.18%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 RWKKVLQPGLNKGHWTAQEDEVVRSAVTKAEAAG-SWSRVAGLLPGRLGKQCRERWCNHLDPSVKKTKWTTHEDEVLFNAQRFFGTRWCEIAKFLPGRTENAVKNRYNSSARQ 336
            RW KVL+PGL+KG WT +ED +VR  V    A    WS +A  L GR+GKQCRERW NHLDP++ K +WT  ED ++F AQ  FG RW +IAK LPGRTEN+VKNR+NSSAR+
Sbjct:   48 RWNKVLRPGLHKGPWTEEEDGIVRDMVLMYGAGKVKWSAIAAKLHGRIGKQCRERWFNHLDPNINKGEWTPEEDRIVFEAQNQFGNRWSDIAKLLPGRTENSVKNRWNSSARK 160          
BLAST of mRNA_P-littoralis_Contig705.5.1 vs. uniprot
Match: A0A7S1GEG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEG8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.270e-44
Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 RWKKVLQPGLNKGHWTAQEDEVVRSAVTKAEAAG-SWSRVAGLLPGRLGKQCRERWCNHLDPSVKKTKWTTHEDEVLFNAQRFFGTRWCEIAKFLPGRTENAVKNRYNSSARQ 336
            RW KVL+PGL KG W  +ED+VVR  V K       WS +A  LPGR+GKQCRERW NHLDP++KK  W   ED ++F AQR  G +WCEIA+ LPGRTENAVKNR+NSSAR+
Sbjct:   53 RWNKVLKPGLVKGPWLKEEDDVVRDMVMKYGVGQVRWSVIASKLPGRIGKQCRERWFNHLDPAIKKGGWMEEEDLLIFQAQREVGNKWCEIARMLPGRTENAVKNRWNSSARR 165          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig705.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKF8_ECTSI1.760e-5882.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LA90_9PHAE6.020e-5881.58MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
F0Y9B4_AURAN6.140e-4863.72Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A836C844_9STRA6.530e-4864.66Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
F0Y5J6_AURAN2.670e-4760.00Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A835YLN0_9STRA2.530e-4663.72Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A6U4HUA2_9STRA2.250e-4565.49Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
D7FRA0_ECTSI1.460e-4464.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2BQG7_9STRA1.850e-4460.18Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1GEG8_9STRA2.270e-4461.95Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig705contigP-littoralis_Contig705:40924..42350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKF8
PFAMsLON_substr_bdg,Myb_DNA-binding
Model size336
Max annot lvl2759|Eukaryota
KEGG koko:K20290
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.89e-59
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-19_000770.1
DescriptionRNA polymerase II transcription regulator recruiting activity
Cds size336
COG categoryADK
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791473.0398488-CDS-P-littoralis_Contig705:40923..410281680791473.0398488-CDS-P-littoralis_Contig705:40923..41028Pylaiella littoralis U1_48CDSP-littoralis_Contig705 40924..41028 +
1680791473.0542817-CDS-P-littoralis_Contig705:41843..419781680791473.0542817-CDS-P-littoralis_Contig705:41843..41978Pylaiella littoralis U1_48CDSP-littoralis_Contig705 41844..41978 +
1680791473.066972-CDS-P-littoralis_Contig705:42254..423501680791473.066972-CDS-P-littoralis_Contig705:42254..42350Pylaiella littoralis U1_48CDSP-littoralis_Contig705 42255..42350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig705.5.1prot_P-littoralis_Contig705.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig705 40924..42350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig705.5.1

>prot_P-littoralis_Contig705.5.1 ID=prot_P-littoralis_Contig705.5.1|Name=mRNA_P-littoralis_Contig705.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
RWKKVLQPGLNKGHWTAQEDEVVRSAVTKAEAAGSWSRVAGLLPGRLGKQ
CRERWCNHLDPSVKKTKWTTHEDEVLFNAQRFFGTRWCEIAKFLPGRTEN
AVKNRYNSSARQ
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mRNA from alignment at P-littoralis_Contig705:40924..42350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig705.5.1 ID=mRNA_P-littoralis_Contig705.5.1|Name=mRNA_P-littoralis_Contig705.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1427bp|location=Sequence derived from alignment at P-littoralis_Contig705:40924..42350+ (Pylaiella littoralis U1_48)
AGGTGGAAGAAAGTTCTGCAGCCGGGGTTGAACAAGGGGCACTGGACAGC CCAGGAGGACGAGGTCGTTCGAAGCGCGGTGACGAAGGCCGAGGCAGCCG GATCGGTGAGTAGTGCAGAACGGTTGCTCTTGTTTTCGTGGCTTTATGCT TGCTTAGAGGGGGCGAGGGGGGGGAAAGGGCGAAAGGATGTACCGCACGC GCGGGCGGGCGGAGGGGGGTTTAGAGGGGTTTGGAggGGAGGGGAGGGGA GAGGGATACTGCTGTTGGTGATGCTTGGTTGAACCTGTGATATGTTGTGT TGTTCTTGGTTGTGGTGGTGATTGTTACGCCGTTGGTGGTAGTGTATGTC GCTACTGTGGGAATCAAAAGTTTGTGCCAGTGTGTGCTTCGTACGCCGCG AAAGATGATAGTGTACAGGTACGGCTACGCCGGTGCAACCTCCATGTTAT GAGTGACAGCTGCTTTTGCTGGGATTTGTTGTGAAGACCAGGATGCGTGG TAGCCTACATAACAAGCAACCTCTCAACAGAAAGGTTTCAATTGGAAACC TCGCTAGCTCTAGTAGTCCTCGAATAGACGAGCCTCGAAATGTGCTGCGA GGTACGTCAACAATCTTTTGATGAAGAATCGTCCTGAAAACGCCGTACCA ACAGCAGCACCAAACGACAATAATAGCGCAGCGACACAGTTTCAGCTTTA TTCCACACAACAACAACAACACGAGCGTACGGAGTAAAAATTTTGTCGAA ATCTCACACATGGCTCCACCCCAAGAATCGTTGTGTTTGTGTTCTGCAAG TTCTACGCGGATTTTTGTAAACGAACATCTAAATCTCCATATATTTGTGT ACATTACTAAGTGAAGTATATGTTATTTTACTTTTGCTGCTACGGCTATC ATTGACAACAGAGGGTGAAGTGGAGCCGTGTGGCCGGTCTCCTCCCCGGG CGACTCGGCAAACAGTGCCGCGAGCGCTGGTGCAACCACCTCGACCCCTC CGTCAAGAAGACGAAGTGGACAACCCACGAGGATGAGGTCCTGTTCAATG CTCAGGTATGGATGCATAGAGATGTTTCTAGCGTGTTTGTCTTCTACCAG TATTGCATGTCGTTGTATTTGCCCAGGCCATATCGTAGGGAATGGTGTGG TAATGCTTTCGTTCGATGGATGTCGTTGATGTGGGTGAAATTTCATGTTT TCAGGCGATGTGTTCCTTCTTTAGGAGGGGATGGGCTTGCGTTGTGTTGA GAGTCCTCCCGGTCTTCGTTCTTTTATCGAAATACATGATTTTCGTTTTT ATTGCACAACTTCGCTGCGTCATATATGCAGAGATTTTTCGGCACCCGGT GGTGCGAGATCGCCAAGTTCCTCCCCGGTCGCACGGAAAACGCCGTCAAG AACCGCTACAACTCCTCCGCGAGGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig705:40924..42350+

>mRNA_P-littoralis_Contig705.5.1 ID=mRNA_P-littoralis_Contig705.5.1|Name=mRNA_P-littoralis_Contig705.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig705:40924..42350+ (Pylaiella littoralis U1_48)
AGGTGGAAGAAAGTTCTGCAGCCGGGGTTGAACAAGGGGCACTGGACAGC
CCAGGAGGACGAGGTCGTTCGAAGCGCGGTGACGAAGGCCGAGGCAGCCG
GATCGTGGAGCCGTGTGGCCGGTCTCCTCCCCGGGCGACTCGGCAAACAG
TGCCGCGAGCGCTGGTGCAACCACCTCGACCCCTCCGTCAAGAAGACGAA
GTGGACAACCCACGAGGATGAGGTCCTGTTCAATGCTCAGAGATTTTTCG
GCACCCGGTGGTGCGAGATCGCCAAGTTCCTCCCCGGTCGCACGGAAAAC
GCCGTCAAGAACCGCTACAACTCCTCCGCGAGGCAG
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