mRNA_P-littoralis_Contig705.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig705.3.1
Unique NamemRNA_P-littoralis_Contig705.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig705.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig705contigP-littoralis_Contig705:33337..35434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1520
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002800.1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791472.9593577-UTR-P-littoralis_Contig705:33336..333921680791472.9593577-UTR-P-littoralis_Contig705:33336..33392Pylaiella littoralis U1_48UTRP-littoralis_Contig705 33337..33392 +
1680791472.9933338-UTR-P-littoralis_Contig705:34285..354341680791472.9933338-UTR-P-littoralis_Contig705:34285..35434Pylaiella littoralis U1_48UTRP-littoralis_Contig705 34286..35434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791472.971852-CDS-P-littoralis_Contig705:33392..335481680791472.971852-CDS-P-littoralis_Contig705:33392..33548Pylaiella littoralis U1_48CDSP-littoralis_Contig705 33393..33548 +
1680791472.9817538-CDS-P-littoralis_Contig705:34126..342851680791472.9817538-CDS-P-littoralis_Contig705:34126..34285Pylaiella littoralis U1_48CDSP-littoralis_Contig705 34127..34285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig705.3.1prot_P-littoralis_Contig705.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig705 33393..34285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig705.3.1

>prot_P-littoralis_Contig705.3.1 ID=prot_P-littoralis_Contig705.3.1|Name=mRNA_P-littoralis_Contig705.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MLLPPPPPPPPPPLVQNSAAASSYPVTAQQPPQQHPLAKPIAERIASIGP
QELEAMRRLPDAQTQYPFIFDGHPGFGPFRDTLASLVMPRLAGGGGGGGG
STGT*
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mRNA from alignment at P-littoralis_Contig705:33337..35434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig705.3.1 ID=mRNA_P-littoralis_Contig705.3.1|Name=mRNA_P-littoralis_Contig705.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2098bp|location=Sequence derived from alignment at P-littoralis_Contig705:33337..35434+ (Pylaiella littoralis U1_48)
TAGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTACTGCTCCT
CCCTCGATGCTGCTCCCGCCGCCGCCGCCGCCCCCGCCGCCTCCGCTGGT
CCAGAATTCGGCGGCAGCTTCGTCGTATCCGGTCACCGCGCAGCAGCCTC
CGCAACAGCACCCCCTCGCCAAACCAATTGCGGAGCGTATTGCGTCTATC
GGCCCTCAAGAGGTTTGTAAATACTTGGTACCATACTTCGAAGTATATGT
TTTAGTTTTCCGATGATTTTTCCAAACCAGCGATGGGCGTTGGTTTGCTG
TGCTTGCGAAGGGCGGTCGGTTTTGCCCTTTGTATTGTGTTTGTGGTGAG
TTGTTGACATCGTTGCTGGTCGGTGTGCCTGTGTGTGGTAATTTATTTCT
GCGCGGAGAGGTGGCGGGTTCGTTTCGCGCATTGCAGCCTAATCGAACAG
GTTTGAATATGTGGCGCCGTCATGTCGACGTCGCACGGCGAGTGGACCAG
CGTGTTGAAAAGAAGCGGCGACGGTATGTACGGTTGTTTGAGATGATGAA
ATGGTATTTCTCTTCAGATACACATAGTAGTAATTTTATGAAACGACGGC
GATATTTATCATGTTCCTCTGTGCATTCAGCTTGTCAATCCTGGTCACAA
TTCGCCCCCCCCCCCCACTCCGTCATTTTGTATTGCTTCTCCTCTCACTC
CCTCTTCCTCATTCAGTGACACCCTAAACAAACTGAAAAAAACATCAATT
TAACCCCAAATCCACCGTCGATGCATCTCCGTGTCGGCAGCTCGAAGCGA
TGCGACGTCTGCCGGACGCTCAGACCCAGTACCCGTTTATTTTCGATGGG
CACCCCGGCTTCGGTCCGTTTCGAGACACGCTCGCCAGCTTGGTGATGCC
TCGGCTTGCGGGCGGTGGTGGTGGCGGTGGTGGCAGTACGGGAACGTGAC
GATCGAACGTGCCGGCCGTGGCTTCAGTATAGTGCGGTTTGTTCGTGCCA
CTGTGTTCTCTCAAATATTTTCCCCCAAACACGCGCGCGCATGATGCCGG
GAAAACGGGCTGGTCTCAACAAAATGTTATTCGAAAAATATCCGTCAACG
ACAACATGTGTTGCAGAGGGTTGGCTGGTCGGTGACTGGCTGATGCCCAC
TGATCCTGCTTAGTTATGGGGAGTGAAGAGACCTCTGCCATTCGTGTCGT
TTCACGTGGCGGCCGGGAGATGATAATTGGAATCGGATCGATTGTTGTGT
GGAGCGTCTGTCCGTTGTGGTACATCGGAGCGGGTCGAGATATTTTAGGG
CGGGTTGCTGGTGGCTGCGTGCGTGGATTTGTTAGTTCGTGTGTTTCTGG
GTCAATATTTTTGTGGAGACGGCGCGTCTAGCTCACAGATCGACCAAGGA
CCATTTAAGAAGGCATGGATCTCACGTGTACTGCTGTAGCGGCATCGAAA
ACCAAACCAAAACTTTCGTCTAAAGGGGAAGAACTGCGGCGGGGTTCGGG
CGGAGATCCAGCCTATGATACGGTGCGGGTTACCATATTTTTAATCTACC
GACAAACATGCACGTGTACTTGTACGTGCGTACGTATATATGTGTGTTTC
TAGTGTGTTTCTGTGTTTGTGTATGTTTTTTTCTTTGATACAGACAGCGT
GTGTTTTTTTTTCCGCGTGTAGTGTGTATTTACGTCGATTTTCTAGGATT
TTTTCATTGGGGAGAATAATGTTTTTTTTCTCGATCTCGGTGCGGGTACG
GTACAGCTACCGGCCCGCCATCAAGAAACCATAAAACAGGCTCAGCCTGA
CTTTCTTCTTGATGAGGCGATGGCCGAGCTTTAATAGCCCGTCAGACAAA
AGGTTGTGTGGGGCTCGCAGCTGAGCCTGGCCACTTTCTTAATTTTTCTT
TGACACCTCAGCCTCGCTATCTTCAAGGCCGCTTTCTTGATAGCGGGCCG
ATCGATACGTAGTGTAGCGCGCAACGTCAAGTATTTTGTTTGATGTGCCT
GTGTGTGCGAGATAGCCCAAGAGCGAAAAAAGATATCCAAAGGTCGGTAA
TAGAAGAAATGAGAGAGTGGGGGGGAGAGGGAATGAGGAGGAGATGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig705:33337..35434+

>mRNA_P-littoralis_Contig705.3.1 ID=mRNA_P-littoralis_Contig705.3.1|Name=mRNA_P-littoralis_Contig705.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig705:33337..35434+ (Pylaiella littoralis U1_48)
ATGCTGCTCCCGCCGCCGCCGCCGCCCCCGCCGCCTCCGCTGGTCCAGAA
TTCGGCGGCAGCTTCGTCGTATCCGGTCACCGCGCAGCAGCCTCCGCAAC
AGCACCCCCTCGCCAAACCAATTGCGGAGCGTATTGCGTCTATCGGCCCT
CAAGAGCTCGAAGCGATGCGACGTCTGCCGGACGCTCAGACCCAGTACCC
GTTTATTTTCGATGGGCACCCCGGCTTCGGTCCGTTTCGAGACACGCTCG
CCAGCTTGGTGATGCCTCGGCTTGCGGGCGGTGGTGGTGGCGGTGGTGGC
AGTACGGGAACGTGA
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