mRNA_P-littoralis_Contig704.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig704.39.1
Unique NamemRNA_P-littoralis_Contig704.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig704.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig704contigP-littoralis_Contig704:99494..99687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size184
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791472.1282752-UTR-P-littoralis_Contig704:99493..994951680791472.1282752-UTR-P-littoralis_Contig704:99493..99495Pylaiella littoralis U1_48UTRP-littoralis_Contig704 99494..99495 +
1680791472.1648126-UTR-P-littoralis_Contig704:99610..996871680791472.1648126-UTR-P-littoralis_Contig704:99610..99687Pylaiella littoralis U1_48UTRP-littoralis_Contig704 99611..99687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791472.1387117-CDS-P-littoralis_Contig704:99495..995961680791472.1387117-CDS-P-littoralis_Contig704:99495..99596Pylaiella littoralis U1_48CDSP-littoralis_Contig704 99496..99596 +
1680791472.149153-CDS-P-littoralis_Contig704:99606..996101680791472.149153-CDS-P-littoralis_Contig704:99606..99610Pylaiella littoralis U1_48CDSP-littoralis_Contig704 99607..99610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig704.39.1prot_P-littoralis_Contig704.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig704 99496..99610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig704.39.1

>prot_P-littoralis_Contig704.39.1 ID=prot_P-littoralis_Contig704.39.1|Name=mRNA_P-littoralis_Contig704.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=35bp
MSIWFCFNCASFQGWCHLVHKFGMMAFMGWATRT*
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mRNA from alignment at P-littoralis_Contig704:99494..99687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig704.39.1 ID=mRNA_P-littoralis_Contig704.39.1|Name=mRNA_P-littoralis_Contig704.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=194bp|location=Sequence derived from alignment at P-littoralis_Contig704:99494..99687+ (Pylaiella littoralis U1_48)
AGATGAGTATTTGGTTTTGTTTCAATTGTGCCTCGTTCCAGGGGTGGTGC
CATCTAGTGCACAAGTTTGGCATGATGGCGTTCATGGGTTGGGCGACGCG
GACGCGGCCTCAGTTGAAATAGTATGAGACCACGCGGAGTATTGAGTCGT
TGGAACATGGTCTCAGTCGTGCGTCGTACGACATGCGGCACTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig704:99494..99687+

>mRNA_P-littoralis_Contig704.39.1 ID=mRNA_P-littoralis_Contig704.39.1|Name=mRNA_P-littoralis_Contig704.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=105bp|location=Sequence derived from alignment at P-littoralis_Contig704:99494..99687+ (Pylaiella littoralis U1_48)
ATGAGTATTTGGTTTTGTTTCAATTGTGCCTCGTTCCAGGGGTGGTGCCA
TCTAGTGCACAAGTTTGGCATGATGGCGTTCATGGGTTGGGCGACGCGGA
CTTGA
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