mRNA_P-littoralis_Contig704.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig704.11.1
Unique NamemRNA_P-littoralis_Contig704.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig704.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig704contigP-littoralis_Contig704:45744..48889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size664
Hectar predicted targeting categoryother localisation
Exons7
Cds size660
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig704.11.1prot_P-littoralis_Contig704.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig704 45744..48887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791471.9678319-CDS-P-littoralis_Contig704:45743..458231680791471.9678319-CDS-P-littoralis_Contig704:45743..45823Pylaiella littoralis U1_48CDSP-littoralis_Contig704 45744..45823 +
1680791471.978243-CDS-P-littoralis_Contig704:46297..464271680791471.978243-CDS-P-littoralis_Contig704:46297..46427Pylaiella littoralis U1_48CDSP-littoralis_Contig704 46298..46427 +
1680791471.9894347-CDS-P-littoralis_Contig704:46999..470921680791471.9894347-CDS-P-littoralis_Contig704:46999..47092Pylaiella littoralis U1_48CDSP-littoralis_Contig704 47000..47092 +
1680791471.999183-CDS-P-littoralis_Contig704:47355..474511680791471.999183-CDS-P-littoralis_Contig704:47355..47451Pylaiella littoralis U1_48CDSP-littoralis_Contig704 47356..47451 +
1680791472.0091524-CDS-P-littoralis_Contig704:47700..478081680791472.0091524-CDS-P-littoralis_Contig704:47700..47808Pylaiella littoralis U1_48CDSP-littoralis_Contig704 47701..47808 +
1680791472.020566-CDS-P-littoralis_Contig704:48301..484061680791472.020566-CDS-P-littoralis_Contig704:48301..48406Pylaiella littoralis U1_48CDSP-littoralis_Contig704 48302..48406 +
1680791472.0301647-CDS-P-littoralis_Contig704:48839..488871680791472.0301647-CDS-P-littoralis_Contig704:48839..48887Pylaiella littoralis U1_48CDSP-littoralis_Contig704 48840..48887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig704.11.1

>prot_P-littoralis_Contig704.11.1 ID=prot_P-littoralis_Contig704.11.1|Name=mRNA_P-littoralis_Contig704.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=220bp
VRPTTPVPAWIAARHFISTPGSPPGSSRASAKQAAELESPNAVAGGGDRG
RGDDENRAAVPDEASSDGEEKHSAPEVFHHFVFSGELEALPDCVTVNDMA
TEMTQLAADISGAADNDALVEQLKRELEGLRAKIDTLCVGDGIEIDAGKD
ETPYVASILAMHARSRTVKVRFLVVPEQFDDVQAREVFWSMRVSWEPLAL
VVKKVAVFAETPPGGLPPGA
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mRNA from alignment at P-littoralis_Contig704:45744..48889+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig704.11.1 ID=mRNA_P-littoralis_Contig704.11.1|Name=mRNA_P-littoralis_Contig704.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3146bp|location=Sequence derived from alignment at P-littoralis_Contig704:45744..48889+ (Pylaiella littoralis U1_48)
GTCCGGCCCACAACCCCGGTCCCGGCATGGATCGCGGCCAGGCACTTTAT
CTCAACGCCCGGATCCCCGCCTGGTTCGAGGTGAGATGGGCACATGAATT
CCTCCTGTGGTGATGGCCGACACGCTGTTGTACTAACTGTACCAGTATCT
CCACACAGAACCAAGGACCATCCCCTCGTCTCCCCCAGCTGATCTTCAGA
GACAGTTTTGTGACTTGGACATTTATCTCGGCAAATGGAACTCGTTTGTC
GAGCGGCAAAATATCATGCTGCATTCGAAGTAACGTTTTTCGGGTGGCTA
TACAAAATAATCAAAGGGAAGATATGTTGTACGAAATAGATCCAAGCTAC
GAAACGTACAGCCGGCAGCTGCAGCACAAGCAGCGGTAGTCGCCTACGTG
TTTGAATGCCTGGGTGTTAGCAGCTTGATCGACCGTCACACATTTCAGCA
CACCCAGCGACCAGTCCGATCAGAGCCGAGCACCACTCCCCCTCATTCCG
TCGATTACCACACTGTCCCGCTCGAAAATGTCGCTCTGCATCCGCCCCGT
TAAGTCGTGCCAGCGCGAAGCAGGCGGCAGAACTGGAATCCCCCAATGCT
GTTGCTGGCGGTGGCGACCGCGGCCGTGGGGACGACGAAAACCGCGCGGC
GGTTCCAGATGAAGCCTCCAGTGACGGCGAGGAAGTGAGTGTGTGTTACT
TGTGATGTACTACGTAGGAGTACGGTGTCATCCCCACCGCTGCCGCCATT
GGGTGAGCCCCGTTATGTCACGGCCGAGGTCGGTGTGATCAAAGCAGTTC
CGTTTTTTTTTTACGCTCAGGAAGAAGTATAAATATGGCTCTTTACTTCG
ATCCGAGCAAATAGAGCGGGCAAAATAGTACCTGGTAGTAAATGGCATTG
CTGGCTTGCGTCTCAAAAATATCAAGAAATGGTTGGTTTTTAGTTTTTGG
AATGAGGGACGACATATGTTTGTTTTGTACTTGGTGTATATTATACTTCG
AAGTACGTCGAAGTGTTTTTTTTACGCTCACCTCTCTTGGCTTTCCCTCC
CTCGCTGTCATTTCCCATCTCTCTCTATTTATTTTGTTGCTGGGCGAAGA
GTCGAACACATTTTCTCCAATGAAGGCGTTGCAGTGGCCCAGGTCATTGT
TTATTATGTTTATCCGGTCGCCTGATGTACGTGAGCCATTTCCAGATTTC
CTCGATTAAAAAAAGCCTGATCATTTTTTTATCTTGTTTTTTCACGACGC
TCGTAGAAACATTCTGCGCCAGAAGTCTTCCACCACTTCGTGTTCAGTGG
TGAATTGGAGGCGCTGCCCGACTGCGTAACCGTCAACGACATGGCGACGG
TGAGTATTTACTGGCAGGGTATCCGCGCTACCGTGCCCCCTTTCAACCCC
CGACTTGGGCTTGCGTTCCTGTTTGTTTTGGTTTTGAGTGCTTTTCCAGT
TCCAAGATTGCATCGAAGGGCGTCTACGCCCCCCCCCCCCCTTTTTTCAT
GTTCGTCCGTCTGCGAGCAGGTCAAACAAAACCATTGACTTCGCGTGAGT
AGTGCCTGCGCCACAGCTCACGTCTGCTCCCGCCCGCCGCTGCCTCATGT
GATGATTGACAGGAGATGACGCAGCTAGCGGCGGATATCTCGGGCGCTGC
TGACAACGACGCCCTGGTCGAGCAGCTCAAGCGTGAGCTAGAAGGGCTCC
GCGCCAAGGTAATTATTCAACTCAATCGCTGGAAACCGGTAAACTGATGC
ATTTTTATGCGGGGAGATGAAGAAAACAAAACACCGGGTGATGTACGAAC
AGCGGTAGGAAGGCAATTTTATCAACTACCGCTTTTGGACGGTTTGAGTC
GCTCTTCTGTCGTAGCCCGCTCACTCCCTCACTCACTCACTCACTCACGA
CGATTTTTTGTTCGTTCCCCCCTCGTCCCCCCTCCACCATCTTGTCGGTT
GATCTAGATCGATACGCTTTGTGTGGGTGATGGTATCGAGATCGATGCCG
GCAAAGATGAAACCCCTTACGTGGCATCAATCCTCGCCATGCATGCTCGT
TCCAGGACAGTAAAGGTGAAATAGGTTTAAACAGACTTGACCGCAAAAGC
TCCTTTTTTTTTTCCCATCGCAGAACAGACTCCATACCAAGATTGACGAA
CAGCTGCTTTTTACAGTAATCATTGCCATACCTGCATACGTCTGTTTGCT
TTGTACCAGTGCCTCTCCCGCCTGCTCCACTTGTTCACGCCGTCCACCTC
CTGTGGTGTATATTTGAAGCACACCACACGCACAGCCGAGGTCACGTGTC
TTATATAGAGGGCTGCTCTACCTCCGGTGCATGCCTTTATTTCAATTTTG
TTGCGAGAAGACCGCAGCCGTTCAAAAGCCTCGTTAGCACATATCATACG
CCGAATGAACACGATGTGTACTCTCAGGCTGAGTGCTCTCCATTGATAGG
TTTATTACCGGCAACAGTCCCTTCCTGTTTCAAGCGTTCCTTCGGATGGG
TGCGTGCATCCATTCTCGCCGCTTATTTTTACTTGCATTTTTTTTTTTCT
TTTTGCAGGTTCGTTTCCTGGTAGTACCAGAACAATTTGACGACGTGCAA
GCAAGAGAAGTGTTCTGGTCCATGCGCGTCTCGTGGGAGCCGCTGGCTCT
TGTGGTGAAGAAGGTGCGGAGAAGTACTGCTGTAACGACCGATTGGTGGT
GTGTGACACTGAAAAGCTTCATCCCCCCTGAACATCGTGTCCCGTTCTGT
GCGATTGCACTCAAATCGGTCTTTCGCACGATCCGCACACACGCACCTGT
TCAAGACATGAGGTTGGTGGAGAAGATGTTCACTTGTCCCTATAGTCGCC
ATCACGAAGAGAAAGAAAACAAAGATGTTGACGCGATGAAGCAAGCTTTC
GAGAGAGCCGGATATCATTGACGGGCGTCGACGTGAGCGGAGCCTGATGA
ACTTGCTGTTGGGGCACACGCGCACGCGTGGCTCGCCCATGTTCTCACCA
CACCACACACAACACCGACCGGTGCATGTTTGCGCCGCTTGTCCCTCGCG
TCTGCAATGGCTACTCGGGTGAATCGCCGCTTGTTACCGTGAAAAGGTGG
CCGTATTCGCCGAGACGCCACCGGGCGGATTGCCTCCGGGCGCGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig704:45744..48889+

>mRNA_P-littoralis_Contig704.11.1 ID=mRNA_P-littoralis_Contig704.11.1|Name=mRNA_P-littoralis_Contig704.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig704:45744..48889+ (Pylaiella littoralis U1_48)
GTCCGGCCCACAACCCCGGTCCCGGCATGGATCGCGGCCAGGCACTTTAT
CTCAACGCCCGGATCCCCGCCTGGTTCGAGTCGTGCCAGCGCGAAGCAGG
CGGCAGAACTGGAATCCCCCAATGCTGTTGCTGGCGGTGGCGACCGCGGC
CGTGGGGACGACGAAAACCGCGCGGCGGTTCCAGATGAAGCCTCCAGTGA
CGGCGAGGAAAAACATTCTGCGCCAGAAGTCTTCCACCACTTCGTGTTCA
GTGGTGAATTGGAGGCGCTGCCCGACTGCGTAACCGTCAACGACATGGCG
ACGGAGATGACGCAGCTAGCGGCGGATATCTCGGGCGCTGCTGACAACGA
CGCCCTGGTCGAGCAGCTCAAGCGTGAGCTAGAAGGGCTCCGCGCCAAGA
TCGATACGCTTTGTGTGGGTGATGGTATCGAGATCGATGCCGGCAAAGAT
GAAACCCCTTACGTGGCATCAATCCTCGCCATGCATGCTCGTTCCAGGAC
AGTAAAGGTTCGTTTCCTGGTAGTACCAGAACAATTTGACGACGTGCAAG
CAAGAGAAGTGTTCTGGTCCATGCGCGTCTCGTGGGAGCCGCTGGCTCTT
GTGGTGAAGAAGGTGGCCGTATTCGCCGAGACGCCACCGGGCGGATTGCC
TCCGGGCGCG
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