mRNA_P-littoralis_Contig702.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig702.50.1
Unique NamemRNA_P-littoralis_Contig702.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig702.50.1 vs. uniprot
Match: D7FPV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV9_ECTSI)

HSP 1 Score: 363 bits (933), Expect = 2.240e-121
Identity = 217/259 (83.78%), Postives = 233/259 (89.96%), Query Frame = 1 
Query:    1 RGERLRKREEEREIKRANKRRKLGKKPLEVDKSGGHEGRVKKHANRRRLELARLERLVAKQEELLRDYRPPVHVTPLDPELKRKRRRRDFYDLDTSHWQLTGAARPADSLPGAGGTELVNERGDWEAGEDLFEKLGGVTNGSGXXXXXXXXXXXXXXXXXXXXXDADKEVKGENKKDRGTSGGGFYEGPEACREFLDLNHQLAQRLHEGGKESQTEEALERYQRSLQLDPVDHINARRGLVRLLLDAGDAAKARAIIDR 777
            RGERLRKRE ER  KRA KRRKLGKKPL VD+SGG+E + KKHAN+RRLELARLERLV+KQEELLRDYRPPVHV PLDPELKRKRRRRDFYDLDTSHW+LTGAARPADSLPGAGGTELVNER DWEAGEDLFEKL G ++   XXXXXXXXXXXXXXXXXXXXX    E +G  K +  TSGGGFYEGPEACRE+LDLNHQLAQRLH+GGKESQTEEAL+RYQRSL+LDPVDH+NARRGLVRLLLD GDA KARA+IDR
Sbjct:    3 RGERLRKREAERAEKRAKKRRKLGKKPLTVDRSGGYESQPKKHANKRRLELARLERLVSKQEELLRDYRPPVHVAPLDPELKRKRRRRDFYDLDTSHWKLTGAARPADSLPGAGGTELVNEREDWEAGEDLFEKLAGASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRGRQKGE--TSGGGFYEGPEACREYLDLNHQLAQRLHDGGKESQTEEALKRYQRSLELDPVDHVNARRGLVRLLLDGGDADKARAVIDR 259
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BLAST of mRNA_P-littoralis_Contig702.50.1 vs. uniprot
Match: A0A835Z3Z8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Z8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.730e-19
Identity = 60/125 (48.00%), Postives = 79/125 (63.20%), Query Frame = 1 
Query:   37 EIKRANKRRKLGKKPLEVDKSGGHEGRVKKHANRRRLELARLERLVAKQEELLRDYRPPVHVTPLDPELKRKRRRRDFYDLDTSHWQLTGAARPADSLPGAGGTELVNERGDW-EAGEDLFEKLG 408
            ++K+A KR +  +    ++   GH+   +K   +R+LE++RL+R  AKQEELLR+Y PP   TP  PE +R+RRR+DFYDLDTS WQL GAARPA  +    G E  N    W E GEDLF   G
Sbjct:    3 QLKKAEKRGREDRAKPRLETFAGHDKAPRKADLKRKLEVSRLKRAAAKQEELLRNYIPPKVTTPECPESRRRRRRQDFYDLDTSKWQLRGAARPAPII----GAEPENPH--WQEQGEDLFALKG 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig702.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPV9_ECTSI2.240e-12183.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z3Z8_9STRA4.730e-1948.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig702contigP-littoralis_Contig702:147617..149940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FPV9
Model size780
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.67e-122
EggNOG OGs2C0FH@1|root,2QU7Q@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008510.1
Cds size780
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791471.623015-CDS-P-littoralis_Contig702:147616..1477661680791471.623015-CDS-P-littoralis_Contig702:147616..147766Pylaiella littoralis U1_48CDSP-littoralis_Contig702 147617..147766 +
1680791471.6369686-CDS-P-littoralis_Contig702:147927..1480291680791471.6369686-CDS-P-littoralis_Contig702:147927..148029Pylaiella littoralis U1_48CDSP-littoralis_Contig702 147928..148029 +
1680791471.6478271-CDS-P-littoralis_Contig702:148513..1488501680791471.6478271-CDS-P-littoralis_Contig702:148513..148850Pylaiella littoralis U1_48CDSP-littoralis_Contig702 148514..148850 +
1680791471.659238-CDS-P-littoralis_Contig702:149368..1494501680791471.659238-CDS-P-littoralis_Contig702:149368..149450Pylaiella littoralis U1_48CDSP-littoralis_Contig702 149369..149450 +
1680791471.673842-CDS-P-littoralis_Contig702:149831..1499401680791471.673842-CDS-P-littoralis_Contig702:149831..149940Pylaiella littoralis U1_48CDSP-littoralis_Contig702 149832..149940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig702.50.1prot_P-littoralis_Contig702.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig702 147617..149940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig702.50.1

>prot_P-littoralis_Contig702.50.1 ID=prot_P-littoralis_Contig702.50.1|Name=mRNA_P-littoralis_Contig702.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=260bp
RGERLRKREEEREIKRANKRRKLGKKPLEVDKSGGHEGRVKKHANRRRLE
LARLERLVAKQEELLRDYRPPVHVTPLDPELKRKRRRRDFYDLDTSHWQL
TGAARPADSLPGAGGTELVNERGDWEAGEDLFEKLGGVTNGSGGGDSEED
SGVDDASDDDSSSSDADKEVKGENKKDRGTSGGGFYEGPEACREFLDLNH
QLAQRLHEGGKESQTEEALERYQRSLQLDPVDHINARRGLVRLLLDAGDA
AKARAIIDR*
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mRNA from alignment at P-littoralis_Contig702:147617..149940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig702.50.1 ID=mRNA_P-littoralis_Contig702.50.1|Name=mRNA_P-littoralis_Contig702.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2324bp|location=Sequence derived from alignment at P-littoralis_Contig702:147617..149940+ (Pylaiella littoralis U1_48)
AGGGGGGAGAGGCTGCGGAAGCGAGAGGAGGAACGCGAGATAAAGCGGGC
CAACAAGCGGCGGAAGCTCGGGAAGAAGCCGCTGGAGGTTGATAAATCCG
GTGGGCACGAGGGCCGAGTGAAAAAGCACGCGAACAGGCGACGCCTCGAG
GTACTGCTGTCATGTGCCTGGCATACCCGAGAAACAACACATATATTTCA
CCAGTGTACTGGATGTAGACATCATAAAAATACTGCGATAATTTGTACCT
ACGGACATTCAAGGGGCATGAAAAATGATCACATTTTTCCTTGTCCCTTC
GCCCCCTCCAGCTGGCCAGGCTTGAGAGGCTGGTTGCAAAGCAAGAGGAG
CTACTGCGCGACTACCGACCGCCGGTGCACGTGACTCCGCTTGATCCAGA
GCTGAAGCGGAAGGTACGCGCAGAGGAAGGGAGAAGAGTGCAGGGCGGGG
GGCGGGGGGCGGGTGTGGAGGAGGTGAACCGCCCTCGGTTGTTTGGCCTA
CCTCGTGTCATTCGGCATGATGTGTCCGTTGACCAATCACGTACTTGTAC
CCCTTTTCGAGAACGGCGCACACCTGGTCTCGTGTTTAGCTTCAAAAGGG
TGCTTCTCAATCGCGCGGCGCAGATAGTGAGTGGGAAAGTCGTACGGTTT
TGTGACCAGCACGAAATGTACAGACATGCCAGACAGCGTTTGTCAGAGGG
GGTTTTGGAATCTGTTTTTTGCGTCGATCGTGAGAGTCGACCGCGGTCGC
TCGAGAGGGTCACGATCCCACGCCAGCTGACGTGTTTTCCAGCGGCCGTC
ACAACGGTAGTTGCGGGCAACAACGAAACACCGCCCCCTCTCCGCCCCAT
CCTCACCGTTTACCCACGTCTGTACCACCGCACCAAAAATTTCAAAGAGA
CGTCGGCGCGATTTTTACGACCTGGACACGTCGCACTGGCAGCTCACGGG
GGCCGCGAGACCGGCTGACTCCCTGCCGGGGGCGGGGGGTACGGAGCTCG
TGAACGAGAGAGGGGACTGGGAGGCCGGCGAGGATTTGTTTGAGAAGTTG
GGAGGCGTCACCAACGGGAGCGGTGGCGGCGACAGCGAAGAAGACAGCGG
TGTCGATGACGCCAGTGACGACGATAGCAGCAGCAGTGACGCAGACAAGG
AAGTAAAGGGAGAGAACAAGAAAGATAGAGGGACGAGCGGGGGGGGGTTC
TACGAAGGGCCTGAGGCCTGCAGGGAGTTTCTCGGTGAGGAAAGGCAGGC
CGGCGGAGGGAAGGGTTTGAGAGTTGTGTTGGTGATGGGAGCTTTGCGCA
CAACGGCAGTCGCTATCTAGCCGGGGCAGACCGCTTCCATCGGCCTCGGA
CCGATGTGGCGTAGGTGCGGGTCTGGCTGGTCATGATGGAGCACCCGGCG
GTCGGCAGCATATTGATGCCACGAGGCAGAATATCCAACCTGGCGGGGTT
TTTTTAGCAGAAACAGCAGAAGCAGCAGTGATAGACGAGGGGGTAATTTT
ATAAATCTATTGGTGTTTTCGGTTTTGAGCAAGGGGCAACGGTCTTTATG
ATGCGGCGGGGAGAGAGGATAGATCGGTCTATGGCTCGCTGCGTTTTTCC
TCGCTGTACTTGTACTAAATACTTCGAAGTACATCATTTTTGCAACTAAA
GGCCCCATTCGAGCAACTAAAGCACTTTTCCCGATGTTAATTTGAAATGT
TCCCTCTGGGGGGTTCGAAACGTGGTGTGGTACCAAATGTGGTCGTGTCC
AGATTTGAACCACCAGCTGGCGCAAAGGCTGCACGAAGGCGGCAAGGAGT
CTCAGACAGAAGAAGCGCTCGAGCGGTACCAAAGGTATGTACGTTCGGGG
TCCATATCATAATTGAATTCAGAAAAATGGAGTCAACAGTTGAGTTACGG
GTATTTTTTCCGTTCACACTGGATTTCAATTCAAAATAAAATGTACTTCG
AAGTACTCCGTATTTTTTTTTTTAAGGAACCGTTACCGTTACGGGTACGG
CCCGGCCCAGTCTAGCTCAGCCCGTTCTCGCCCCTCACTGGCTAGCTTCG
GCGAAACAGCCGCCCCTCACCCCCGCGTGGGTGGTAAATATCCCGGGCCA
TTTTCGTTTGCGATTTACGTACGTACCTGCGTACACAGTACGTACGTCCG
TGCAAATACATACATACACACGACGGGATACCTTGTTATCCGCGTGGGAT
TCGGCTCGGACACAGATCTCTGCAGCTCGACCCGGTTGATCACATAAATG
CGAGAAGGGGACTGGTGCGTCTCCTGCTGGACGCGGGCGACGCAGCTAAG
GCCCGTGCCATCATCGACCGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig702:147617..149940+

>mRNA_P-littoralis_Contig702.50.1 ID=mRNA_P-littoralis_Contig702.50.1|Name=mRNA_P-littoralis_Contig702.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=780bp|location=Sequence derived from alignment at P-littoralis_Contig702:147617..149940+ (Pylaiella littoralis U1_48)
AGGGGGGAGAGGCTGCGGAAGCGAGAGGAGGAACGCGAGATAAAGCGGGC
CAACAAGCGGCGGAAGCTCGGGAAGAAGCCGCTGGAGGTTGATAAATCCG
GTGGGCACGAGGGCCGAGTGAAAAAGCACGCGAACAGGCGACGCCTCGAG
CTGGCCAGGCTTGAGAGGCTGGTTGCAAAGCAAGAGGAGCTACTGCGCGA
CTACCGACCGCCGGTGCACGTGACTCCGCTTGATCCAGAGCTGAAGCGGA
AGAGACGTCGGCGCGATTTTTACGACCTGGACACGTCGCACTGGCAGCTC
ACGGGGGCCGCGAGACCGGCTGACTCCCTGCCGGGGGCGGGGGGTACGGA
GCTCGTGAACGAGAGAGGGGACTGGGAGGCCGGCGAGGATTTGTTTGAGA
AGTTGGGAGGCGTCACCAACGGGAGCGGTGGCGGCGACAGCGAAGAAGAC
AGCGGTGTCGATGACGCCAGTGACGACGATAGCAGCAGCAGTGACGCAGA
CAAGGAAGTAAAGGGAGAGAACAAGAAAGATAGAGGGACGAGCGGGGGGG
GGTTCTACGAAGGGCCTGAGGCCTGCAGGGAGTTTCTCGATTTGAACCAC
CAGCTGGCGCAAAGGCTGCACGAAGGCGGCAAGGAGTCTCAGACAGAAGA
AGCGCTCGAGCGGTACCAAAGATCTCTGCAGCTCGACCCGGTTGATCACA
TAAATGCGAGAAGGGGACTGGTGCGTCTCCTGCTGGACGCGGGCGACGCA
GCTAAGGCCCGTGCCATCATCGACCGGTGA
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