mRNA_P-littoralis_Contig702.32.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig702.32.4 vs. uniprot
Match: D7FPW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW2_ECTSI) HSP 1 Score: 261 bits (667), Expect = 1.170e-74 Identity = 174/353 (49.29%), Postives = 237/353 (67.14%), Query Frame = 2
Query: 245 VSQLYQKQAEIFSSREINDRRRKEGAEMADRIGDLEKRLEEQVSITNRHREQKVVATAILEKKLQTIRDLILKLDHVARQNDVVHFPRLALAAKGVLDHQEGIAAEVLLDLGAATERMERAVSRRDELSK-QEEPTKSFPAANRAKDNESKELASRAEELEAGIEAQKQEQVATEAAHSSSAKVVQRMRTERPELEHRMKDTESRHQQTLCETTELQAEVEEAERSDHEQASLETTRKDSVSTETQALEQSLAQLSIEDMRQGAVEAEQAKSAQTGRALAVEKKDVARESEQDDPKVLEMRAQLQKKIQKKDMLEDQIVAAEETFAAHAINEPEFGDRKAELQALTSKISTIR 1300
VSQL + AE+ SS+E NDR R+E +++ IG EKRLE QVS+TNRHR K A A +EK++Q + DL LK+DH+A+Q++ VH R+ AA GV HQEG A EV +L ER+ER+V++ E K +EE T+ PA AK+NE+ EL SR+EEL+ I Q++EQ+A E A++SS + Q +R +PE+ +++ + H+Q E E +AEVEEAER+DHE A ++ + S++++ A E LAQL +ED R AVE EQA+SAQT +ALA E K + ES QDDPKVL MRA LQ+K QK +L +Q +E FA H +NEP+FGDRK E ALTSK +IR
Sbjct: 6 VSQLCEMNAELSSSKENNDRTRQEISDIRVMIGLQEKRLESQVSVTNRHRSGKAAAMAAVEKRVQGLFDLCLKVDHIAKQHNEVHQQRMKRAAAGVQQHQEGRATEVPRELRVELERLERSVAKEIETKKREEEQTRYLPATILAKENEAAELTSRSEELDVEIRVQREEQIAAEMAYNSSNTLFQDLRRVKPEVLDQIETSHQNHEQNALEMKEARAEVEEAERADHELAVVDGNQNKSLNSDKHAEEARLAQLEVEDNRLTAVEEEQAESAQTTQALAEEMKAITHESMQDDPKVLGMRALLQEKFQKTRLLLEQRKKDDEVFATHGVNEPDFGDRKKEHHALTSKTDSIR 358
BLAST of mRNA_P-littoralis_Contig702.32.4 vs. uniprot
Match: A0A6H5L8B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B9_9PHAE) HSP 1 Score: 109 bits (273), Expect = 3.570e-24 Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = 2
Query: 1139 MRAQLQKKIQKKDMLEDQIVAAEETFAAHAINEPEFGDRKAELQALTSKISTIRSTQASTGARKAAHEEELRRVARETAATTASVGEDIAAERKVHHRIAAEREEIAAAVTAKDILVGKKQAERASIE 1522
MRA LQ+K+QK +L +Q +E FA H +NEP+FGDRK E QALT K IRS AST ARKAAHEEE RRVA+ETAA S+G +I AE H R+ AE E +AAV K++ V K+AE AS E
Sbjct: 1 MRALLQEKLQKTRLLLEQRKKDDEVFATHGVNEPDFGDRKKEHQALTLKTDAIRSAHASTEARKAAHEEEKRRVAKETAAERVSIGAEILAEDNEHARVVAECNETSAAVANKELSVAGKRAEHASAE 128
BLAST of mRNA_P-littoralis_Contig702.32.4 vs. uniprot
Match: A0A6H5L7J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J4_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 3.150e-16 Identity = 70/183 (38.25%), Postives = 93/183 (50.82%), Query Frame = 2
Query: 245 VSQLYQKQAEIFSSREINDRRRKEGAEMADRIGDLEKRLEEQVSITNRHREQKVVATAILEKKLQTIRDLILKLDHVARQNDVVHFPRLALAAKGVLDHQEGIAAEVLLDLGAATERMERAVSRRDELSKQEEPTKSFPAANRAKDNESKELASRAEELEAGIEAQKQEQVATEAAHSSSAKV 793
VSQL + AE+ S +E NDR R+E +++ IG EKRLE QVS TNRHR K ATA +EK++Q + DL LK+DH+A+Q H E +EE T + PA N AK+NE+ EL R+EEL+ I Q++EQ E A +SS V
Sbjct: 6 VSQLCEMNAELSSCKENNDRTRQEISDIRVMIGLQEKRLESQVSATNRHRSGKAAATAAVEKRMQRLFDLRLKVDHIAKQ------------------HNE-----------------------------REEQTTNLPATNLAKENEAAELTRRSEELDVEIRVQREEQATAETACTSSTTV 141 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig702.32.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig702.32.4 >prot_P-littoralis_Contig702.32.4 ID=prot_P-littoralis_Contig702.32.4|Name=mRNA_P-littoralis_Contig702.32.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=607bp MEGVSQLYQKQAEIFSSREINDRRRKEGAEMADRIGDLEKRLEEQVSITNback to top mRNA from alignment at P-littoralis_Contig702:91467..110641- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig702.32.4 ID=mRNA_P-littoralis_Contig702.32.4|Name=mRNA_P-littoralis_Contig702.32.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=19175bp|location=Sequence derived from alignment at P-littoralis_Contig702:91467..110641- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig702:91467..110641- >mRNA_P-littoralis_Contig702.32.4 ID=mRNA_P-littoralis_Contig702.32.4|Name=mRNA_P-littoralis_Contig702.32.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1821bp|location=Sequence derived from alignment at P-littoralis_Contig702:91467..110641- (Pylaiella littoralis U1_48)back to top |