mRNA_P-littoralis_Contig702.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig702.4.1
Unique Name	mRNA_P-littoralis_Contig702.4.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

[Close]

BLAST of mRNA_P-littoralis_Contig702.4.1 vs. uniprot
Match: D7FPX0_ECTSI (RNA polymerase sigma factor n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX0_ECTSI)

HSP 1 Score: 500 bits (1288), Expect = 9.310e-166
Identity = 338/567 (59.61%), Postives = 378/567 (66.67%), Query Frame = 1

Query:  253 SHARRRR--RTTPGASPLFATALRAACFAGATTFSAAFTTPASHNFGGLYGTKCNAPTAVEPAAFTAAAAATAATLDRRKNGDGS----GGRHGP-RSRRSQFAMVSAVAEAPLSTPPLPAADASAATTSGCREQGRTRRTPPLTINEERVLLEKIKDARLLRECHERLELAAAAVVAXXXXXXXXXXXXXXXXXXXXXXXXXVVGENSVDATAAGTTAIPVEVWAREAGLEVEDLSRALHEGIEAKRTLVERNMPMVINMVHGQYQWRLRGGQVSVADLVQEGAYALGLAADRFDPAMPNRFLTYALYTVRDKVDIALARGNSAISVPASALKELHRARRELSDELGRRPSEAEMANYFANGVVV--GSSPAASXXXXXXXXXXFAAEDGISIVGGXXXXXXXXXXSTAKEGRARRSRAVVNGEFAVTAPSDDREARQQARIRRRRLNLLSAVHKVTSIDRFIRASDGTSMMVPLVETLVGDKA---PRGGEGDIAELLPRVLTPTQADLVRMACGLADERPMSIAECSKELSLSVARTKSLFDNSLEKLRIAATAENPGRLARQP 1917
            S ARRRR  R +P   P    AL  AC AGAT+ SA F TPA    GG YG        +  AA      AT  T+ +R +  GS    GGR GP R RR+  AMVSA AE P +T     ADA A  T G R +G  RRTP LT  EER LL KIK+AR LR+    LE AAA                              +G+       AGT A+ +  WAREAG+EVEDL R L EGIEAK+TLVERNMPMVI MV GQY+WRLRGGQVS ADL+QEGAYALG+AA+RFDP MPNRFLTYALYTVRDK+D+ALARGNSAISVPA+ALKE+HRARREL+  LGR PSEAE+AN+FANGVVV   + PAAS           A + GI   G  XXXXXXXXX            AV +GEFAV A S DREARQQAR RRRRLNLLSAV KVTSIDR IRASDG S MVPLV+TLVGD     PR   GDIAELLPRVLTP QA LVRMACGL+D +PM++AECSKELSLSVARTKSLFD+SL+KLR AA A++ GRL RQP
Sbjct:    3 SQARRRRPTRPSPNTCPFLTRALGVACLAGATSLSAGFVTPAGCR-GGFYG--------INSAAXXXXXXAT--TVRQRGSVGGSKNPVGGRDGPIRLRRNHLAMVSATAEPPAAT--ATDADAWAGATRGRRARGGARRTPALTTEEERALLAKIKNARTLRDIQRGLEAAAATAAGRGEKG--------------------ALGDGRSADGGAGT-AVTMGAWAREAGVEVEDLPRVLQEGIEAKQTLVERNMPMVIRMVEGQYRWRLRGGQVSFADLLQEGAYALGVAAERFDPTMPNRFLTYALYTVRDKLDVALARGNSAISVPATALKEVHRARRELTGRLGRTPSEAELANFFANGVVVVGDAEPAAS-----------AGDGGIRRGGADXXXXXXXXXXXXXX-------AVTDGEFAVKAASSDREARQQARTRRRRLNLLSAVQKVTSIDRLIRASDG-STMVPLVDTLVGDLEDGQPRSAGGDIAELLPRVLTPRQASLVRMACGLSDGKPMTMAECSKELSLSVARTKSLFDSSLQKLRAAAEADDLGRLVRQP 516

[Close]

BLAST of mRNA_P-littoralis_Contig702.4.1 vs. uniprot
Match: A0A1E7F5Q4_9STRA (Sigma2 domain of RNA polymerase sigma factor (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5Q4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.280e-15
Identity = 52/149 (34.90%), Postives = 87/149 (58.39%), Query Frame = 1

Query:  898 EVWAREAGLEVEDLSRALHEGIEAKRTLVERNMPMVINMVHGQYQWRLR--------GGQVSVADLVQEGAYALGLAADRFDPAMPNRFLTYALYTVRDKVDIALARGNSAISVPA---SALKELHRARRELSDELGRRPSEAEMANYF 1311
            E WA+  GLEV  L R + +G EA+  LV  N  +V ++    Y    +        G  +++ D++QEG + L  AA+RF+P    RF TYA Y +R ++  +++  +  I +PA   + L++L+RAR+E++ E+GR PS+ E+A+Y 
Sbjct:   36 EDWAKACGLEVMVLRRIMSKGQEARTVLVSANAGLVTSIAKRHYHALKQATDAMGGVGTILTLQDMIQEGNFGLMKAAERFEPERGWRFSTYATYWIRQRILRSISDSSRVIRLPAHVTATLQKLNRARKEMAAEIGRVPSDPELAHYM 184

[Close]

BLAST of mRNA_P-littoralis_Contig702.4.1 vs. uniprot
Match: A0A1Z4L3X3_NOSLI (RNA polymerase sigma factor n=44 Tax=Nostocales TaxID=1161 RepID=A0A1Z4L3X3_NOSLI)

HSP 1 Score: 87.4 bits (215), Expect = 8.400e-15
Identity = 49/143 (34.27%), Postives = 84/143 (58.74%), Query Frame = 1

Query:  895 VEVWAREAGLEVEDLSRALHEGIEAKRTLVERNMPMVINMVHGQYQWRLRGGQVSVADLVQEGAYALGLAADRFDPAMPNRFLTYALYTVRDKVDIALARGNSAISVPASALKELH---RARRELSDELGRRPSEAEMANYFA 1314
            ++ WA +  L +E+L + L++G +AK+ +++ N+ +V+  V  +YQ R     +   DL+QEG   L    D+FDPA+  +F TYA + +R  +  A+A+    I +P    ++L+   R +RELS +LGR PS AE+A   +
Sbjct:   80 LQEWAEQTNLSIEELQQQLNQGQQAKQKMIQANLRLVV-AVAKKYQHR----NLEFMDLIQEGTLGLERGVDKFDPALGYKFSTYAYWWIRQGITRAIAQQGRTIRLPIHIFEKLNKIKRVQRELSQQLGRVPSTAEIAEALS 217

[Close]

BLAST of mRNA_P-littoralis_Contig702.4.1 vs. uniprot
Match: A0A448YV05_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV05_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.980e-14
Identity = 52/147 (35.37%), Postives = 85/147 (57.82%), Query Frame = 1

Query:  904 WAREAGLEVEDLSRALHEGIEAKRTLVERNMPMVINMVHGQY----QWRLRGGQV----SVADLVQEGAYALGLAADRFDPAMPNRFLTYALYTVRDKVDIALARGNSAISVPA---SALKELHRARRELSDELGRRPSEAEMANYF 1311
            WAR   L+V +L + + EG E++  LV  N  +V ++    Y    Q    GG V    ++ D++QEG   L  AA+RF+P    RF TYA Y +R ++  ++   +  I +PA   + L++ ++ARRE++ E+GR PS+AE+A+Y 
Sbjct:  312 WARACDLDVSELRKVMDEGQESRSLLVSANAGLVTSIAKRHYHVLKQMTNAGGGVGTILTLQDMIQEGNLGLMKAAERFEPERGWRFSTYATYWIRQRILQSITDTSRVIRLPAHVTATLQKFNKARREMAAEIGRMPSDAELAHYM 458

[Close]

BLAST of mRNA_P-littoralis_Contig702.4.1 vs. uniprot
Match: W6FJT8_NODSP (Cyanobacteria-specific RpoD-like sigma factor, type-2 Group 2 RNA polymerase sigma factor n=9 Tax=Aphanizomenonaceae TaxID=1892259 RepID=W6FJT8_NODSP)

HSP 1 Score: 84.7 bits (208), Expect = 5.040e-14
Identity = 51/139 (36.69%), Postives = 81/139 (58.27%), Query Frame = 1

Query:  895 VEVWAREAGLEVEDLSRALHEGIEAKRTLVERNMPMVINMVHGQYQWRLRGGQVSVADLVQEGAYALGLAADRFDPAMPNRFLTYALYTVRDKVDIALARGNSAISVP---ASALKELHRARRELSDELGRRPSEAEMA 1302
            +E WA  A LEV +L+ A+ +G  AKR +VE N+ +V+++   +Y  R     V + DL+QEG+  +    ++FDP    RF TYA + +R  +  A+A     I +P      L ++ +A+R+LS +LGR PS AE+A
Sbjct:   59 LEEWALAANLEVAELNDAIADGETAKRKMVEANLRLVVSVAK-KYIKR----NVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPSAAELA 192

[Close]

BLAST of mRNA_P-littoralis_Contig702.4.1 vs. uniprot
Match: A0A7T1HUJ1_9SYNE (RNA polymerase sigma factor n=2 Tax=Synechococcus sp. CBW1004 TaxID=1353136 RepID=A0A7T1HUJ1_9SYNE)

HSP 1 Score: 84.3 bits (207), Expect = 1.480e-13
Identity = 57/147 (38.78%), Postives = 79/147 (53.74%), Query Frame = 1

Query:  871 AAGTTAIPVEVWAREAGLEVEDLSRALHEGIEAKRTLVERNMPMVINMVHGQYQWRLRGGQVSVADLVQEGAYALGLAADRFDPAMPNRFLTYALYTVRDKVDIALARGNSAISVPASALKELHRARR---ELSDELGRRPSEAEMA 1302
            A G  A   + WA  AGL    L  ALH G  AK  +++ N+ +V+  V  +YQ R     + + DLVQEG   L    +RFDP    RF TYA + +R  +  ALA  +  I +P    ++L+R RR   ELS +LGR P+ AE+A
Sbjct:  116 ANGAQAQDRDRWAEAAGLSPAALRLALHRGRRAKERMIQANLRLVV-AVAKKYQQR----GLELLDLVQEGTLGLEKGVERFDPTRGFRFSTYAYWWIRQGITRALASQSRTIRLPVHVTEKLNRIRRLQRELSHQLGRSPTVAEVA 257

[Close]

BLAST of mRNA_P-littoralis_Contig702.4.1 vs. uniprot
Match: A0A1Y1IKU7_KLENI (RNA polymerase sigma factor n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKU7_KLENI)

HSP 1 Score: 85.9 bits (211), Expect = 1.760e-13
Identity = 59/153 (38.56%), Postives = 81/153 (52.94%), Query Frame = 1

Query:  880 TTAIPV--EVWAREAGLEVEDLSRALHEGIEAKRTLVERNMPMVINMVHGQYQWRLRGGQVSVADLVQEGAYALGLAADRFDPAMPNRFLTYALYTVRDKVDIALARGNSAISVPA---SALKELHRARRELSDELGRRPSEAEMANYFANGV 1323
            +T +P   E WA+ AG+ V  L R +  G EA++ LVE N+ +V+   +    +      +   DL   G   L +AADRFDPA+ NRF TYAL  VR  +  A+ R    I  P    + L  L + RRELS +LGR P+  E+A Y   GV
Sbjct:  452 STGVPASEEQWAKAAGVSVNALGRQIAAGKEARQRLVECNLRLVMFAANSMKHYP---NALPTEDLFLAGIQGLLIAADRFDPALGNRFSTYALPAVRSYLHRAIQRSGVLICAPVKRTTGLVNLDKVRRELSAKLGRLPTLDEIAKYKNVGV 601

[Close]

BLAST of mRNA_P-littoralis_Contig702.4.1 vs. uniprot
Match: A0A7S2XSD2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSD2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.780e-13
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = 1

Query:  850 ENSVDATAAGTTAIPVEVWAREAGLEVEDLSRALHEGIEAKRTLVERNMPMVINMVHGQYQWRLR---------GGQVSVADLVQEGAYALGLAADRFDPAMPNRFLTYALYTVRDKVDIALARGNSAISVPA---SALKELHRARRELSDELGRRPSEAEMANY 1308
            E++ DA    T       WA E    V +L + +H+G EA+  LV  N  +V  +    Y W L+         G  +++ DL+QEG   L  AA+RFDP+   RF TYA + VR +V  ++A  +  I +P    + LK + +AR+E++ ++GR PS  E+A++
Sbjct:   10 ESNPDAEGIETPQPTEAEWADECDFSVMELRQVMHDGREARSKLVACNAGLVTQIAKRHY-WTLKRSNQDGRGVGTILTMQDLIQEGNLGLMEAAERFDPSKGFRFSTYATWWVRQRVLRSIADYSRVIRLPVHVHTMLKNISKARKEMTKQIGRDPSMPELAHH 173

[Close]

BLAST of mRNA_P-littoralis_Contig702.4.1 vs. uniprot
Match: UPI001E465873 (RpoD/SigA family RNA polymerase sigma factor n=1 Tax=Nostoc sp. WHI TaxID=2650611 RepID=UPI001E465873)

HSP 1 Score: 81.6 bits (200), Expect = 6.960e-13
Identity = 49/134 (36.57%), Postives = 78/134 (58.21%), Query Frame = 1

Query:  922 LEVEDLSRALHEGIEAKRTLVERNMPMVINMVHGQYQWRLRGGQVSVADLVQEGAYALGLAADRFDPAMPNRFLTYALYTVRDKVDIALARGNSAISVPASALKELH---RARRELSDELGRRPSEAEMANYFA 1314
            L VE L + LH G +AK+ +++ N+ +V+  V  +YQ R     +   DL+QEG   L    D+FDPA+  +F TYA + +R  +  A+A+    I +P    ++L+   R +RELS +LGR P+ AE+AN  +
Sbjct:   89 LSVEVLEQQLHLGHQAKQKMIQANLRLVV-AVAKKYQHR----NLEFMDLIQEGTLGLERGVDKFDPALGYKFSTYAYWWIRQGITRAIAQQGRTIRLPIHVFEKLNKIKRVQRELSQQLGRVPNTAEIANALS 217

[Close]

BLAST of mRNA_P-littoralis_Contig702.4.1 vs. uniprot
Match: A0A0S3TSB4_9CYAN (RpoD family RNA polymerase sigma factor n=17 Tax=Nostocales TaxID=1161 RepID=A0A0S3TSB4_9CYAN)

HSP 1 Score: 80.9 bits (198), Expect = 9.720e-13
Identity = 49/139 (35.25%), Postives = 79/139 (56.83%), Query Frame = 1

Query:  895 VEVWAREAGLEVEDLSRALHEGIEAKRTLVERNMPMVINMVHGQYQWRLRGGQVSVADLVQEGAYALGLAADRFDPAMPNRFLTYALYTVRDKVDIALARGNSAISVP---ASALKELHRARRELSDELGRRPSEAEMA 1302
            +E WA    LE+ +L++A+ +   AKR +VE N+ +V+++   +Y  R     V + DL+QEG+  +    ++FDP    RF TYA + +R  +  A+A     I +P      L ++ +ARR+LS  LGR PS AE+A
Sbjct:   59 LEEWATATQLELTELNQAIADAEIAKRKMVEANLRLVVSVAK-KYIKR----NVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKARRQLSQRLGRAPSVAELA 192

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig702.4.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig702.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPX0_ECTSI	9.310e-166	59.61	RNA polymerase sigma factor n=2 Tax=Ectocarpus Tax...	[more]
A0A1E7F5Q4_9STRA	3.280e-15	34.90	Sigma2 domain of RNA polymerase sigma factor (Frag...	[more]
A0A1Z4L3X3_NOSLI	8.400e-15	34.27	RNA polymerase sigma factor n=44 Tax=Nostocales Ta...	[more]
A0A448YV05_9STRA	4.980e-14	35.37	RNA_pol_sigma70 domain-containing protein n=1 Tax=...	[more]
W6FJT8_NODSP	5.040e-14	36.69	Cyanobacteria-specific RpoD-like sigma factor, typ...	[more]
A0A7T1HUJ1_9SYNE	1.480e-13	38.78	RNA polymerase sigma factor n=2 Tax=Synechococcus ...	[more]
A0A1Y1IKU7_KLENI	1.760e-13	38.56	RNA polymerase sigma factor n=1 Tax=Klebsormidium ...	[more]
A0A7S2XSD2_9STRA	3.780e-13	33.33	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
UPI001E465873	6.960e-13	36.57	RpoD/SigA family RNA polymerase sigma factor n=1 T...	[more]
A0A0S3TSB4_9CYAN	9.720e-13	35.25	RpoD family RNA polymerase sigma factor n=17 Tax=N...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig702	contig	P-littoralis_Contig702:12464..16063 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	118166.JH976537_gene4759
PFAMs	Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
Model size	2561
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03087
KEGG Pathway	ko02026,ko05111,map02026,map05111
Hectar predicted targeting category	chloroplast
Exons	2
Evalue	2.12e-15
EggNOG OGs	COG0568@1\|root,COG0568@2\|Bacteria,1G1HF@1117\|Cyanobacteria,1H8K2@1150\|Oscillatoriales
Ec32 ortholog description	Winged helix-turn-helix DNA-binding domain
Ec32 ortholog	Ec-01_008380.1
Description	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Cds size	1680
COG category	K
BRITE	ko00000,ko00001,ko03021

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791469.9677632-UTR-P-littoralis_Contig702:12463..13104	1680791469.9677632-UTR-P-littoralis_Contig702:12463..13104	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig702 12464..13104 -
1680791469.9938495-UTR-P-littoralis_Contig702:14784..14800	1680791469.9938495-UTR-P-littoralis_Contig702:14784..14800	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig702 14785..14800 -
1680791470.004829-UTR-P-littoralis_Contig702:15839..16063	1680791470.004829-UTR-P-littoralis_Contig702:15839..16063	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig702 15840..16063 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791469.9801664-CDS-P-littoralis_Contig702:13104..14784	1680791469.9801664-CDS-P-littoralis_Contig702:13104..14784	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig702 13105..14784 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig702.4.1	prot_P-littoralis_Contig702.4.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig702 13105..14784 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig702:12464..16063-
coding sequence from alignment at P-littoralis_Contig702:12464..16063-

protein sequence of mRNA_P-littoralis_Contig702.4.1

>prot_P-littoralis_Contig702.4.1 ID=prot_P-littoralis_Contig702.4.1|Name=mRNA_P-littoralis_Contig702.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=560bp
MSTRSHARRRRRTTPGASPLFATALRAACFAGATTFSAAFTTPASHNFGG
LYGTKCNAPTAVEPAAFTAAAAATAATLDRRKNGDGSGGRHGPRSRRSQF
AMVSAVAEAPLSTPPLPAADASAATTSGCREQGRTRRTPPLTINEERVLL
EKIKDARLLRECHERLELAAAAVVAGKGKAKGKRNGNGNGTGVGVGVGVG
VVGENSVDATAAGTTAIPVEVWAREAGLEVEDLSRALHEGIEAKRTLVER
NMPMVINMVHGQYQWRLRGGQVSVADLVQEGAYALGLAADRFDPAMPNRF
LTYALYTVRDKVDIALARGNSAISVPASALKELHRARRELSDELGRRPSE
AEMANYFANGVVVGSSPAASTSSTAAAAAAFAAEDGISIVGGGGGNGDGD
GSSTAKEGRARRSRAVVNGEFAVTAPSDDREARQQARIRRRRLNLLSAVH
KVTSIDRFIRASDGTSMMVPLVETLVGDKAPRGGEGDIAELLPRVLTPTQ
ADLVRMACGLADERPMSIAECSKELSLSVARTKSLFDNSLEKLRIAATAE
NPGRLARQP*

mRNA from alignment at P-littoralis_Contig702:12464..16063-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig702.4.1 ID=mRNA_P-littoralis_Contig702.4.1|Name=mRNA_P-littoralis_Contig702.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3600bp|location=Sequence derived from alignment at P-littoralis_Contig702:12464..16063- (Pylaiella littoralis U1_48)
CTGTCACCGAGTCACCGAGTCATTTTTGAACACACGTAGCGTTTTCTGTC
GTCTGACATCCAAGGGTACCTCCCAACGACGACGATCTTCTGCAGATCCC
TGACAGATTTAAGTGACGCACTAAAAGTACACAGTAACAACTACGGGAGA
GCCGCGAAGGAGGAACGAACAATCGCCGGCGTTGGTGGGAATTTGGAGAC
CGAAAAGTCTACCCGAGTCACGAGGTGAGGACGCTGAACGAATTCCGGCG
AGGACACGGAAGCTCCAACCAGATGGCTACCCCTACCTTCACCTCGACAA
CAGCAACAGCAGTGCACATGTACAGAGGCCTACAAACCTACACCCTTTCC
CGCCCAGTGTGTACATTTTCCCTGCTTCTGTCCTTCGTCGCAGTCGACGT
CGTGCTCCACGTCCACTGTAGGACACACACGCACGTGTTGTGTGTTGTCT
CGTCATGCCCTATTGTAGCTCCCTCTCCTTCACAGCAGTGGGCTTCTTCT
GGAAGCATAGGAGGCAATTTGAGTGCGCATTGTAAGGACAGCGGCAGTTG
CTAGTCGCGCCGGCGTGGAGATTTAGATAAAACGAGAGGGCGAAATTTCC
GCACTCATGAGTTCCTATTGTGGGCGCCCGTTTGCAAGCTACCCAAGCCA
GGAGAGAGACAAATGGGTTGGTCCGCGCTTTAGGTTTTTTGTCACTGTTG
TCTCCTGCGGTATGATATCGGTCTGTATTTCACATGATATCATCATCAAA
TCAAATACTTGAAAAAAAAGGGCAAACAGGAGTAGTGTTTGTGTTGGGTT
AAATCTAAACATGTTCGTATACTCCTGTACCGGCATACTCGTACTGCTGG
TATACTCTGGAGTATTAAATAACACTTCGAAGTACTCGGTACATCATACG
AGTACTCAGTAGTATATTATCACATTCAAGTACTTCGAAGTACTTTGAAG
TATGAATTATTATCGGTCCGGGTTATCCCCCTTTTTGAGGGCCCTTCAGC
GGCAGTGTATACGAAGTTGGCACCCAGAACATCCCTGATAAATTGAAACA
TACCCGTGGCTTTTACTGCAGTACACAAATAACACATCACAAACCTACGA
GAAGGCGTGGAACAAACGATTTTTCATTCCCAGCAACTTCTGAAACGTGC
AACGTTGTCAAGAATCGAACATCAGATGCCATATCTTGTCATGTTATTTA
CTCCTGTACTTATTTTTATTTTTTCCCCGCCCTTTTCCCATTACGCGTCA
CATCATTTTTCAGGCCGTTCTCCGCAGGCATGTCCACGCGTTCCCACGCA
CGAAGAAGACGACGAACAACGCCCGGCGCGTCCCCGCTTTTCGCAACAGC
CCTGAGAGCCGCTTGCTTCGCGGGAGCAACAACATTCTCCGCGGCCTTCA
CCACACCGGCTTCCCACAATTTTGGCGGATTGTATGGTACCAAGTGCAAT
GCCCCAACCGCCGTTGAACCCGCAGCTTTCACCGCCGCAGCCGCTGCCAC
CGCCGCGACACTCGACCGACGCAAGAACGGTGATGGCAGCGGCGGCCGTC
ACGGCCCGAGATCTAGGAGGAGCCAGTTCGCAATGGTGTCGGCGGTCGCG
GAGGCACCCTTGTCCACGCCCCCCCTGCCTGCCGCGGACGCGAGTGCGGC
CACGACGAGCGGGTGTCGAGAGCAGGGAAGAACGCGACGGACGCCGCCGC
TTACCATCAACGAGGAGCGGGTGCTCCTCGAAAAAATTAAAGACGCGCGA
TTGCTGCGAGAGTGCCACGAAAGACTAGAACTCGCAGCTGCTGCTGTGGT
GGCGGGGAAGGGGAAGGCGAAGGGCAAGAGGAACGGGAACGGGAACGGGA
CAGGTGTCGGCGTGGGCGTGGGCGTGGGCGTGGTTGGGGAGAACTCGGTA
GACGCCACGGCGGCGGGAACGACGGCAATTCCGGTGGAAGTTTGGGCGCG
GGAGGCCGGCCTTGAGGTGGAGGACCTGTCCCGCGCGCTACACGAAGGAA
TCGAGGCGAAACGAACATTGGTGGAGCGCAACATGCCGATGGTTATCAAT
ATGGTACACGGGCAGTACCAGTGGCGGCTGCGCGGCGGGCAGGTGTCGGT
CGCTGACCTCGTCCAGGAAGGGGCGTACGCCCTGGGCCTCGCGGCGGACC
GTTTTGACCCTGCGATGCCCAACCGCTTCCTCACGTACGCTCTGTACACC
GTGCGAGACAAAGTGGACATTGCGCTGGCTCGCGGCAACTCCGCCATAAG
CGTGCCGGCGTCGGCGCTCAAAGAGCTGCACCGAGCTCGGCGGGAGCTCT
CCGATGAACTGGGGCGGAGGCCTTCCGAGGCGGAGATGGCGAATTATTTT
GCGAATGGGGTGGTGGTGGGCAGCAGTCCCGCCGCATCGACATCGTCAAC
AGCAGCGGCAGCAGCGGCGTTTGCAGCAGAGGATGGAATAAGCATCGTTG
GCGGTGGTGGTGGTAACGGCGACGGTGACGGTAGTTCTACAGCAAAAGAG
GGGCGGGCGAGGCGCAGCAGGGCCGTGGTGAACGGGGAATTTGCAGTCAC
GGCGCCGTCCGACGACAGAGAAGCGCGGCAGCAGGCCAGGATACGGCGGC
GGCGGCTGAACCTGTTGTCGGCGGTGCACAAGGTCACCAGCATCGACCGT
TTCATTCGAGCCAGCGACGGGACGTCCATGATGGTCCCGCTCGTTGAGAC
GCTCGTCGGGGATAAAGCGCCGCGCGGCGGAGAGGGCGACATCGCGGAGC
TACTGCCAAGGGTGCTCACACCAACGCAGGCAGACCTGGTGCGGATGGCG
TGCGGGTTGGCCGACGAGCGTCCGATGTCGATCGCCGAGTGCTCGAAGGA
GTTGTCGCTCAGCGTGGCGAGAACGAAGAGCCTGTTCGACAACAGCCTAG
AAAAGTTGAGAATAGCGGCCACGGCCGAGAATCCTGGTAGGTTGGCACGA
CAACCCTGATGGGAGGGCTGACTTTCAACCAAAAGATAGTGAAGGCACCC
GTATGTGTGGTTGTCGTGCCGGCCGGTTTGTTGGAGGGAGAATCGCTCGC
TCCTTCGATATTTCCCGTGTCGTCCTCGCTTATTTGGAAAGTGCTGAGGT
TGAGACAGGAAGAAACGATCATAGTCTTTTTTTTCTTGAAGCTGGGGCGG
CGTGCTAGCTGCACTCACTCGCCGCCTGGTTTTTGTACAGCAGCGCAAGC
CGCAAGTTGGTTGGCCTTTTTTTTTGTATTGATGGCCGTGCAGCTCAGGG
ACTGGTGCACGATCGATGAAGAGCTGCGTTGGTGTTGTCTCTCGCTGTCA
ATGTTGGTTGTAAACTCGATTTGTCGTTGCTGGTGTGTCCTTTGTACTAG
AAAAAACAGGCGCGCAGCAGACGCGTGCCACTCTTGAGTGATTTGCCGGC
TTGTTTTGCGAGTGACCGGCAGGTGTCTGGTTCACATCTTCAAAAATCTT
ATGTACCAAGGCGCGAGAAGAATGGAAAGAATGAACCGGTGTTCTACCGT
GTCTTTCTGTATGTTATGTATACGCACGTGCCAAGTTTTGGGGCGAACGA
GCGGGCATTCCTGCTAGCTGAACGGAAAATAATTGAAAAAATGCTACGTA

Coding sequence (CDS) from alignment at P-littoralis_Contig702:12464..16063-

>mRNA_P-littoralis_Contig702.4.1 ID=mRNA_P-littoralis_Contig702.4.1|Name=mRNA_P-littoralis_Contig702.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1680bp|location=Sequence derived from alignment at P-littoralis_Contig702:12464..16063- (Pylaiella littoralis U1_48)
ATGTCCACGCGTTCCCACGCACGAAGAAGACGACGAACAACGCCCGGCGC
GTCCCCGCTTTTCGCAACAGCCCTGAGAGCCGCTTGCTTCGCGGGAGCAA
CAACATTCTCCGCGGCCTTCACCACACCGGCTTCCCACAATTTTGGCGGA
TTGTATGGTACCAAGTGCAATGCCCCAACCGCCGTTGAACCCGCAGCTTT
CACCGCCGCAGCCGCTGCCACCGCCGCGACACTCGACCGACGCAAGAACG
GTGATGGCAGCGGCGGCCGTCACGGCCCGAGATCTAGGAGGAGCCAGTTC
GCAATGGTGTCGGCGGTCGCGGAGGCACCCTTGTCCACGCCCCCCCTGCC
TGCCGCGGACGCGAGTGCGGCCACGACGAGCGGGTGTCGAGAGCAGGGAA
GAACGCGACGGACGCCGCCGCTTACCATCAACGAGGAGCGGGTGCTCCTC
GAAAAAATTAAAGACGCGCGATTGCTGCGAGAGTGCCACGAAAGACTAGA
ACTCGCAGCTGCTGCTGTGGTGGCGGGGAAGGGGAAGGCGAAGGGCAAGA
GGAACGGGAACGGGAACGGGACAGGTGTCGGCGTGGGCGTGGGCGTGGGC
GTGGTTGGGGAGAACTCGGTAGACGCCACGGCGGCGGGAACGACGGCAAT
TCCGGTGGAAGTTTGGGCGCGGGAGGCCGGCCTTGAGGTGGAGGACCTGT
CCCGCGCGCTACACGAAGGAATCGAGGCGAAACGAACATTGGTGGAGCGC
AACATGCCGATGGTTATCAATATGGTACACGGGCAGTACCAGTGGCGGCT
GCGCGGCGGGCAGGTGTCGGTCGCTGACCTCGTCCAGGAAGGGGCGTACG
CCCTGGGCCTCGCGGCGGACCGTTTTGACCCTGCGATGCCCAACCGCTTC
CTCACGTACGCTCTGTACACCGTGCGAGACAAAGTGGACATTGCGCTGGC
TCGCGGCAACTCCGCCATAAGCGTGCCGGCGTCGGCGCTCAAAGAGCTGC
ACCGAGCTCGGCGGGAGCTCTCCGATGAACTGGGGCGGAGGCCTTCCGAG
GCGGAGATGGCGAATTATTTTGCGAATGGGGTGGTGGTGGGCAGCAGTCC
CGCCGCATCGACATCGTCAACAGCAGCGGCAGCAGCGGCGTTTGCAGCAG
AGGATGGAATAAGCATCGTTGGCGGTGGTGGTGGTAACGGCGACGGTGAC
GGTAGTTCTACAGCAAAAGAGGGGCGGGCGAGGCGCAGCAGGGCCGTGGT
GAACGGGGAATTTGCAGTCACGGCGCCGTCCGACGACAGAGAAGCGCGGC
AGCAGGCCAGGATACGGCGGCGGCGGCTGAACCTGTTGTCGGCGGTGCAC
AAGGTCACCAGCATCGACCGTTTCATTCGAGCCAGCGACGGGACGTCCAT
GATGGTCCCGCTCGTTGAGACGCTCGTCGGGGATAAAGCGCCGCGCGGCG
GAGAGGGCGACATCGCGGAGCTACTGCCAAGGGTGCTCACACCAACGCAG
GCAGACCTGGTGCGGATGGCGTGCGGGTTGGCCGACGAGCGTCCGATGTC
GATCGCCGAGTGCTCGAAGGAGTTGTCGCTCAGCGTGGCGAGAACGAAGA
GCCTGTTCGACAACAGCCTAGAAAAGTTGAGAATAGCGGCCACGGCCGAG
AATCCTGGTAGGTTGGCACGACAACCCTGA