mRNA_P-littoralis_Contig701.26.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig701.26.1 vs. uniprot
Match: A0A6H5KFW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW3_9PHAE) HSP 1 Score: 172 bits (435), Expect = 6.860e-46 Identity = 85/128 (66.41%), Postives = 101/128 (78.91%), Query Frame = 3
Query: 768 GVTADEIVRFKDLWVMLVEAIIDNTTKMMVYSQKGPARAWRALERNFAPLTGGEQISLIGKFFTAKQKEGQDPHAFYQQFKSTVTSLELAFDQPIPTMLVHARFLDALLPEYEIQKQQLLSQTSLEAD 1151
GV A+ + ++DLW MLV AI D TTK+MVY+ KGP+ AWRALE+ F PLTGGEQISLIGKFFTA+Q+ DP F+QQFKSTVTSLE A Q IP MLV+ARFLDAL EY++QKQQLLS+ LE +
Sbjct: 172 GVAAEGVHVYRDLWGMLVGAISDETTKLMVYNSKGPSAAWRALEQTFTPLTGGEQISLIGKFFTARQERNPDPQVFFQQFKSTVTSLEFALGQLIPKMLVYARFLDALSSEYDVQKQQLLSERILEEE 299
BLAST of mRNA_P-littoralis_Contig701.26.1 vs. uniprot
Match: A0A6H5JN45_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN45_9PHAE) HSP 1 Score: 172 bits (435), Expect = 1.020e-45 Identity = 83/133 (62.41%), Postives = 105/133 (78.95%), Query Frame = 3
Query: 753 GDFGPGVTADEIVRFKDLWVMLVEAIIDNTTKMMVYSQKGPARAWRALERNFAPLTGGEQISLIGKFFTAKQKEGQDPHAFYQQFKSTVTSLELAFDQPIPTMLVHARFLDALLPEYEIQKQQLLSQTSLEAD 1151
G G GV DEI ++DLW ML AI DNTTKMMV+ KGP+ AWRAL F+PLTGGEQISL+GKFF+A+Q++ QDP F+Q+FKS VTSLE+AFDQPIP MLV+ RFLD L ++++QKQQLL+Q +L+ +
Sbjct: 188 GMVGQGVKFDEISMYRDLWGMLTGAISDNTTKMMVFGCKGPSAAWRALVETFSPLTGGEQISLMGKFFSARQEKKQDPPVFFQEFKSIVTSLEIAFDQPIPKMLVYTRFLDGLSIDFDVQKQQLLAQKTLDEE 320
BLAST of mRNA_P-littoralis_Contig701.26.1 vs. uniprot
Match: A0A6H5L579_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L579_9PHAE) HSP 1 Score: 171 bits (433), Expect = 1.720e-45 Identity = 81/128 (63.28%), Postives = 104/128 (81.25%), Query Frame = 3
Query: 768 GVTADEIVRFKDLWVMLVEAIIDNTTKMMVYSQKGPARAWRALERNFAPLTGGEQISLIGKFFTAKQKEGQDPHAFYQQFKSTVTSLELAFDQPIPTMLVHARFLDALLPEYEIQKQQLLSQTSLEAD 1151
GV +EI ++DLWV+L EAI ++ TK+MV+ KGP+ AWRALE F+PLTGGEQISL+ KFF A+Q + QDP F+Q+FKS VTSLELAF+QPIP MLV+ARFLDAL PE+E+QKQ LL+Q +L+ +
Sbjct: 194 GVRREEIAMYRDLWVLLTEAISESATKIMVFGCKGPSAAWRALEETFSPLTGGEQISLMAKFFDAQQGKNQDPRVFFQEFKSIVTSLELAFEQPIPKMLVYARFLDALSPEFELQKQLLLAQKTLDEE 321
BLAST of mRNA_P-littoralis_Contig701.26.1 vs. uniprot
Match: A0A6H5K813_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K813_9PHAE) HSP 1 Score: 160 bits (405), Expect = 1.220e-42 Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 3
Query: 768 GVTADEIVRFKDLWVMLVEAIIDNTTKMMVYSQKGPARAWRALERNFAPLTGGEQISLIGKFFTAKQKEGQDPHAFYQQFKSTVTSLELAFDQPIPTMLVHARFLDALLPEYE 1106
GV A+E+ +++LW MLV AI D TTK+MVY+ KGP+ AWRALE+ F PL GG+QISLIGKFFTA+Q+ QDP F+QQFKSTVTSLE A QPIP MLV+ARFLDAL EY+
Sbjct: 189 GVAAEEVHVYRELWGMLVGAISDETTKLMVYNSKGPSAAWRALEQTFTPLAGGKQISLIGKFFTARQERNQDPRVFFQQFKSTVTSLEFALGQPIPKMLVYARFLDALSSEYD 301
BLAST of mRNA_P-littoralis_Contig701.26.1 vs. uniprot
Match: A0A6H5KRJ2_9PHAE (eIF3g domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ2_9PHAE) HSP 1 Score: 159 bits (402), Expect = 9.390e-41 Identity = 78/126 (61.90%), Postives = 98/126 (77.78%), Query Frame = 3
Query: 768 GVTADEIVRFKDLWVMLVEAIIDNTTKMMVYSQKGPARAWRALERNFAPLTGGEQISLIGKFFTAKQKEGQDPHAFYQQFKSTVTSLELAFDQPIPTMLVHARFLDALLPEYEIQKQQLLSQTSLE 1145
GV EI +++LW ML AI + +TKM+VY +KGP+ AWR LE F P T GEQISLIGKF+ A+Q + QDP F+Q+F+S VT+LELAFDQ I TMLV+ARFLDAL PE+EIQKQQLL+Q +L+
Sbjct: 261 GVEVGEIAMYRNLWGMLTGAISNISTKMLVYDRKGPSAAWRGLEETFTPSTRGEQISLIGKFYNAQQGKNQDPRVFFQEFQSVVTNLELAFDQRIHTMLVYARFLDALSPEFEIQKQQLLTQKTLD 386
BLAST of mRNA_P-littoralis_Contig701.26.1 vs. uniprot
Match: A0A6H5JKA3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA3_9PHAE) HSP 1 Score: 126 bits (316), Expect = 3.550e-30 Identity = 69/128 (53.91%), Postives = 83/128 (64.84%), Query Frame = 3
Query: 768 GVTADEIVRFKDLWVMLVEAIIDNTTKMMVYSQKGPARAWRALERNFAPLTGGEQISLIGKFFTAKQKEGQDPHAFYQQFKSTVTSLELAFDQPIPTMLVHARFLDALLPEYEIQKQQLLSQTSLEAD 1151
GV A+E+ ++DLW MLV AI D TTK+MVY+ KGP+ AWRALE+ PLTGGEQISLIG +LELA QPIP MLV+ARFLDAL EY++QKQQLLS+ LE +
Sbjct: 146 GVAAEEVHVYRDLWGMLVGAISDETTKLMVYNSKGPSAAWRALEQTVTPLTGGEQISLIG-------------------------NLELALGQPIPKMLVYARFLDALSSEYDVQKQQLLSEKILEQE 248
BLAST of mRNA_P-littoralis_Contig701.26.1 vs. uniprot
Match: A0A6H5JH27_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH27_9PHAE) HSP 1 Score: 129 bits (324), Expect = 4.500e-29 Identity = 70/128 (54.69%), Postives = 85/128 (66.41%), Query Frame = 3
Query: 768 GVTADEIVRFKDLWVMLVEAIIDNTTKMMVYSQKGPARAWRALERNFAPLTGGEQISLIGKFFTAKQKEGQDPHAFYQQFKSTVTSLELAFDQPIPTMLVHARFLDALLPEYEIQKQQLLSQTSLEAD 1151
GV A+E+ ++D+W MLV AI D TTK+MVY+ KGP+ AWRALE+ F PLTGGEQISLIG +LELA DQPIP MLV+ARFLDAL EY++QKQQLLS+ LE +
Sbjct: 189 GVAAEEVHVYRDVWGMLVGAISDETTKLMVYNSKGPSAAWRALEQTFTPLTGGEQISLIG-------------------------NLELARDQPIPKMLVYARFLDALSSEYDVQKQQLLSEKILEEE 291
BLAST of mRNA_P-littoralis_Contig701.26.1 vs. uniprot
Match: A0A6H5KRQ4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ4_9PHAE) HSP 1 Score: 117 bits (292), Expect = 4.610e-27 Identity = 88/196 (44.90%), Postives = 114/196 (58.16%), Query Frame = 1
Query: 256 PHTGEGESTAPSREEFNTAI----GDLSAKLESLMT--------SMSRVVQGAAPAA---AGEGGESRGGRHTVPGAGQQGGLDQAPNTGETRDWQRH------QEEPASSVGDVSRESASGELLAHQASSISIS-SRTPRLRQLDFDGKEENWPMFQNDFLTQVHACGMMSCLKDSRDISVHGLSDEEILDQGLQ 777
P TG TAP+R+E TAI GD S +LE +M ++SR+V PAA AG GGESR G H PGAG++ DQAPNTG + R +E S G+ SR+ + E H+A + S +R PRL+ L+FDG E+NWPMFQN+F TQV CGM L DSRDI V G+ DE ++ QG++
Sbjct: 9 PGTG---GTAPTRDEVKTAIDKAVGDASTRLEKMMAEKMEGFMDALSRLVPETPPAAGTAAGGGGESREGMHASPGAGRE---DQAPNTGRGVEGARGGLLGPVPQESTPSEGNDSRDGMNSE---HKARYTTTSHARIPRLKLLNFDGHEKNWPMFQNEFTTQVQTCGMTRALTDSRDIVVQGVDDEGMVGQGVK 195
BLAST of mRNA_P-littoralis_Contig701.26.1 vs. uniprot
Match: A0A6H5L522_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L522_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.710e-25 Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 3
Query: 768 GVTADEIVRFKDLWVMLVEAIIDNTTKMMVYSQKGPARAWRALERNFAPLTGGEQISLIGKFFTAKQKEGQDPHAFYQQFKSTV 1019
GV +EI ++DLWV+L EAI ++ TK+MV+ KGP+ AWRALE F+PLTGGEQISL+ KFF A+Q + QDP FYQ+FKS V
Sbjct: 194 GVRREEIAMYRDLWVLLTEAISESATKIMVFGCKGPSAAWRALEETFSPLTGGEQISLMAKFFDAQQGKNQDPRVFYQEFKSIV 277
BLAST of mRNA_P-littoralis_Contig701.26.1 vs. uniprot
Match: A0A6H5K5X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X4_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 2.000e-17 Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 3
Query: 768 GVTADEIVRFKDLWVMLVEAIIDNTTKMMVYSQKGPARAWRALERNFAPLTGGEQISLIGKFFTAKQK 971
GV +E+ ++DL ML AI D TTK+MVY+ KGP+ AWRALE+ F PLTGGEQISLIGKF+T K++
Sbjct: 159 GVAVEEVYVYRDLCGMLGGAISDETTKLMVYNSKGPSAAWRALEQTFTPLTGGEQISLIGKFYTDKRE 226 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig701.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig701.26.1 >prot_P-littoralis_Contig701.26.1 ID=prot_P-littoralis_Contig701.26.1|Name=mRNA_P-littoralis_Contig701.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp MAAEGKENPHTGEGESTAPSREEFNTAIGDLSAKLESLMTSMSRVVQGAAback to top mRNA from alignment at P-littoralis_Contig701:95757..103374- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig701.26.1 ID=mRNA_P-littoralis_Contig701.26.1|Name=mRNA_P-littoralis_Contig701.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7618bp|location=Sequence derived from alignment at P-littoralis_Contig701:95757..103374- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig701:95757..103374- >mRNA_P-littoralis_Contig701.26.1 ID=mRNA_P-littoralis_Contig701.26.1|Name=mRNA_P-littoralis_Contig701.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig701:95757..103374- (Pylaiella littoralis U1_48)back to top |