mRNA_P-littoralis_Contig701.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig701.23.1
Unique NamemRNA_P-littoralis_Contig701.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig701.23.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.020e-10
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   64 EDVADFVGMQETRRAGRTCFTAAGSKVFCCGSEKGGQHGVGIA 192
            +DV+  VGMQETRRAGRT F AAG +VFCCG+E GG HGVGIA
Sbjct:  144 QDVS-VVGMQETRRAGRTEFAAAGFRVFCCGTETGGVHGVGIA 185
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BLAST of mRNA_P-littoralis_Contig701.23.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.430e-10
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   64 EDVADFVGMQETRRAGRTCFTAAGSKVFCCGSEKGGQHGVGIA 192
            +DV+  VGMQETRRAGRT F AAG +VFCCG+E GG HGVGIA
Sbjct:   89 QDVS-VVGMQETRRAGRTEFAAAGFRVFCCGTETGGVHGVGIA 130
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BLAST of mRNA_P-littoralis_Contig701.23.1 vs. uniprot
Match: A0A6H5JLQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.180e-10
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   73 ADFVGMQETRRAGRTCFTAAGSKVFCCGSEKGGQHGVGIA 192
            A  VGMQETRRAGRT F AAG +VFCCG+E  G HGVGIA
Sbjct:  118 ASVVGMQETRRAGRTEFAAAGFRVFCCGTETDGVHGVGIA 157
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BLAST of mRNA_P-littoralis_Contig701.23.1 vs. uniprot
Match: A0A6H5KE09_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE09_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.230e-9
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   79 FVGMQETRRAGRTCFTAAGSKVFCCGSEKGGQHGVGIASE 198
            FVG+QE RR GRT FTA+G +VF CG++KGG HGVGIA E
Sbjct:   79 FVGLQEVRRPGRTEFTASGFRVFTCGTDKGGTHGVGIAVE 118
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BLAST of mRNA_P-littoralis_Contig701.23.1 vs. uniprot
Match: A0A6H5L3X5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.050e-9
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   64 EDVADFVGMQETRRAGRTCFTAAGSKVFCCGSEKGGQHGVGIASE 198
            +D++ FVG+QE RR GRT FTA+G +VF CG++KGG HGVGIA E
Sbjct:  136 QDIS-FVGLQEVRRPGRTEFTASGFRVFTCGTDKGGTHGVGIAVE 179
[Close]
BLAST of mRNA_P-littoralis_Contig701.23.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 7.220e-9
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   64 EDVADFVGMQETRRAGRTCFTAAGSKVFCCGSEKGGQHGVGIASE 198
            +D++ FVG+QE RR GRT FTA+G +VF CG++KGG HGVGIA E
Sbjct:   75 QDIS-FVGLQEVRRPGRTEFTASGFRVFTCGTDKGGTHGVGIAVE 118
[Close]
BLAST of mRNA_P-littoralis_Contig701.23.1 vs. uniprot
Match: A0A6H5KFG7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG7_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 7.820e-9
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   79 FVGMQETRRAGRTCFTAAGSKVFCCGSEKGGQHGVGIASE 198
            FVG+QE RR GRT FTA+G +VF CG++KGG HGVGIA E
Sbjct:    6 FVGLQEVRRPGRTEFTASGFRVFTCGTDKGGTHGVGIAVE 45
[Close]
BLAST of mRNA_P-littoralis_Contig701.23.1 vs. uniprot
Match: A0A6H5JX07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX07_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.770e-8
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   64 EDVADFVGMQETRRAGRTCFTAAGSKVFCCGSEKGGQHGVGIASESPSATVSH 222
            +D++  +G+QE RR GRT FTA+G +VF CG++KGG HGVGIA E      SH
Sbjct:   15 QDISS-IGLQEVRRPGRTEFTASGFRVFTCGTDKGGTHGVGIAVEEALRKASH 66
[Close]
BLAST of mRNA_P-littoralis_Contig701.23.1 vs. uniprot
Match: A0A6H5JY99_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY99_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.330e-8
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   64 EDVADFVGMQETRRAGRTCFTAAGSKVFCCGSEKGGQHGVGIASE 198
            +D++ FVG+QE RR GRT F A+G +VF CG++KGG HGVGIA E
Sbjct:   50 QDIS-FVGLQEVRRPGRTEFAASGFRVFTCGTDKGGTHGVGIAVE 93
[Close]
BLAST of mRNA_P-littoralis_Contig701.23.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.700e-8
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   79 FVGMQETRRAGRTCFTAAGSKVFCCGSEKGGQHGVGIASE 198
            FVG+QE RR GRT F A+G +VF CG++KGG HGVGIA E
Sbjct:  109 FVGLQEVRRPGRTEFAASGFRVFTCGTDKGGTHGVGIAVE 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig701.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KDS6_9PHAE4.020e-1074.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBD7_9PHAE4.430e-1074.42Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLQ6_9PHAE7.180e-1075.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE09_9PHAE5.230e-970.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L3X5_9PHAE6.050e-964.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9G5_9PHAE7.220e-964.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFG7_9PHAE7.820e-970.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JX07_9PHAE1.770e-854.72Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JY99_9PHAE3.330e-862.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQZ7_9PHAE4.700e-867.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig701contigP-littoralis_Contig701:90481..91151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size286
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_002320.2
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791469.5860405-UTR-P-littoralis_Contig701:90480..905141680791469.5860405-UTR-P-littoralis_Contig701:90480..90514Pylaiella littoralis U1_48UTRP-littoralis_Contig701 90481..90514 -
1680791469.6234145-UTR-P-littoralis_Contig701:91064..911511680791469.6234145-UTR-P-littoralis_Contig701:91064..91151Pylaiella littoralis U1_48UTRP-littoralis_Contig701 91065..91151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791469.6043043-CDS-P-littoralis_Contig701:90514..905761680791469.6043043-CDS-P-littoralis_Contig701:90514..90576Pylaiella littoralis U1_48CDSP-littoralis_Contig701 90515..90576 -
1680791469.6140666-CDS-P-littoralis_Contig701:90961..910641680791469.6140666-CDS-P-littoralis_Contig701:90961..91064Pylaiella littoralis U1_48CDSP-littoralis_Contig701 90962..91064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig701.23.1prot_P-littoralis_Contig701.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig701 90515..91064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig701.23.1

>prot_P-littoralis_Contig701.23.1 ID=prot_P-littoralis_Contig701.23.1|Name=mRNA_P-littoralis_Contig701.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
MQETRRAGRTCFTAAGSKVFCCGSEKGGQHGVGIASESPSATVSHTLPSS
LISA*
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mRNA from alignment at P-littoralis_Contig701:90481..91151-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig701.23.1 ID=mRNA_P-littoralis_Contig701.23.1|Name=mRNA_P-littoralis_Contig701.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=671bp|location=Sequence derived from alignment at P-littoralis_Contig701:90481..91151- (Pylaiella littoralis U1_48)
GGACCCTGGCTGTAAGGGGGCCAATGGGCTGGGCCACGACCACAGCGTCC
TGTATGAAGCGGAGAGGATGTAGCTGACTTTGTTGGCATGCAGGAAACGA
GGCGGGCAGGGAGAACATGCTTTACAGCAGCAGGGTCCAAAGTCTTCTGC
TGCGGATCCGAGAAAGGTGGGCAACACGGGGTGGGGATAGCTGTTGGATA
TACTCGCAGCAGCATGTGATTGTACCGTACCGATTGCAGTATGGCGGAGA
TATGGTAGAATGTGATGAGGGGTGACGTGGAATGTATGACGTATGTGCGG
AGTATTTCGGGCATGTGTCCGTGATATGTTCTGGCATGTGCCCTCTTTGG
TGTGCACTCGTGTGCGTGTTTAATCTATCAAAGTTCGGCCCAGCGCCTTC
CCAAACAACATGCCCAGCGCATTTCCAAGCTACAGGCCCAGAGCCTCTCC
CAAGTACACGGCCCAGAGCCTCGGCCCAGAGCCCATACCTTACCGCACCG
CCCAGCGCCCTCACCTCACAACATAACACCCATACACGGGCAAACTGCAC
CTCGCACCAAATGTCCATTAATAGCCATCAGAGAGTCCATCTGCAACAGT
TTCACATACACTACCGAGTTCGTTGATTAGCGCCTAATGGCAATGCGGTT
TGAGATGGAAGGCCAGAGCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig701:90481..91151-

>mRNA_P-littoralis_Contig701.23.1 ID=mRNA_P-littoralis_Contig701.23.1|Name=mRNA_P-littoralis_Contig701.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig701:90481..91151- (Pylaiella littoralis U1_48)
ATGCAGGAAACGAGGCGGGCAGGGAGAACATGCTTTACAGCAGCAGGGTC
CAAAGTCTTCTGCTGCGGATCCGAGAAAGGTGGGCAACACGGGGTGGGGA
TAGCATCAGAGAGTCCATCTGCAACAGTTTCACATACACTACCGAGTTCG
TTGATTAGCGCCTAA
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