mRNA_P-littoralis_Contig701.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig701.19.1
Unique NamemRNA_P-littoralis_Contig701.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig701.19.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.260e-16
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    7 QTDVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQDQV 231
            ++DV GRQ +PVELKVLA L IL RGN F D+  MS IS  T+  TFH F K FA E Y ++V+LPT GED  +V
Sbjct:  160 ESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT-GEDLRKV 233
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BLAST of mRNA_P-littoralis_Contig701.19.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 8.160e-14
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   13 DVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPT 207
            D AGRQ  PVE KVLA L ILGRGN F  + QMS +S  T+Q  FHMF K FA+E Y +H++LP+
Sbjct:  113 DAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPS 177
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BLAST of mRNA_P-littoralis_Contig701.19.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.230e-13
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   13 DVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQDQV 231
            D +GR+ IPV+LKVLA L IL RGN F D+  MS IS  T   TFH F + FA+E Y +H+ LPT G+ Q +V
Sbjct:  146 DASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPT-GDYQKKV 217
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BLAST of mRNA_P-littoralis_Contig701.19.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.100e-13
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    7 QTDVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQ-DQVTG 237
            Q D  GR+C PVE KVLA L ILGRGN F  +  +S +S PT+Q  FH F + FA E Y +H+ LP+    + D+V G
Sbjct:  113 QRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMG 190
[Close]
BLAST of mRNA_P-littoralis_Contig701.19.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 7.690e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:   13 DVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQDQVTG 237
            DVAGRQC+P+ELKVL  L +LGRGN F D+ Q+S +S  T + +FH F   F+   +H  V LP  GE   +V G
Sbjct:  100 DVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLP-EGEVLKKVAG 173
[Close]
BLAST of mRNA_P-littoralis_Contig701.19.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.900e-12
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:   25 RQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGEDQD 225
            R+CIPVE KVLA L ILGRGN+F+D+++++ + E T+   FH F + FA+EF+   V +P   E +D
Sbjct:  126 RRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDELKD 192
[Close]
BLAST of mRNA_P-littoralis_Contig701.19.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.400e-12
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:   25 RQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAGE 216
            R+CIPVE+KVLA L ILGRGN+F+D+++++ + E T+   FH F + FA+EF+   V +P   E
Sbjct:  125 RRCIPVEIKVLAVLRILGRGNYFDDVSEVTGMGEATVNHLFHKFTERFAREFFPVWVRMPNEVE 188
[Close]
BLAST of mRNA_P-littoralis_Contig701.19.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.560e-12
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   13 DVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPT 207
            D AGR   PVE KVLA L ILGRGN F  + QMS +S  T+Q  FH F K FA+E Y +H++LP+
Sbjct:  113 DGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPS 177
[Close]
BLAST of mRNA_P-littoralis_Contig701.19.1 vs. uniprot
Match: A0A6H5JBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL1_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.630e-12
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   13 DVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPT 207
            D AGRQ   VE KVLA L ILGRGN F  + QMS +S  T+Q  FH F K FA+E Y +H++LP+
Sbjct:  145 DAAGRQSHQVEHKVLAWLTILGRGNCFASIYQMSWMSGKTVQTMFHKFRKHFAREMYDEHIYLPS 209
[Close]
BLAST of mRNA_P-littoralis_Contig701.19.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 9.620e-12
Identity = 38/71 (53.52%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:   10 TDVAGR---QCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQITFHMFNKLFAQEFYHDHVHLPTAG 213
            TD+ GR    CIPVELKVL      GRGNFF+D+ Q+S ISE TIQ  FH F + FA EF+  HV  P   
Sbjct:  122 TDLGGRGTRPCIPVELKVL------GRGNFFDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGA 186
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig701.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPH7_9PHAE3.260e-1657.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI8.160e-1458.46Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JAU4_9PHAE1.230e-1353.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE3.100e-1348.72Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE7.690e-1349.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRQ7_9PHAE1.900e-1247.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP98_9PHAE2.400e-1248.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE2.560e-1255.38Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JBL1_9PHAE3.630e-1255.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE9.620e-1253.52DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig701contigP-littoralis_Contig701:72461..74055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog159749.K0S0Q9
PFAMsPlant_tran
Model size258
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.83e-06
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size258
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791469.535938-CDS-P-littoralis_Contig701:72460..726671680791469.535938-CDS-P-littoralis_Contig701:72460..72667Pylaiella littoralis U1_48CDSP-littoralis_Contig701 72461..72667 -
1680791469.5509877-CDS-P-littoralis_Contig701:74004..740551680791469.5509877-CDS-P-littoralis_Contig701:74004..74055Pylaiella littoralis U1_48CDSP-littoralis_Contig701 74005..74055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig701.19.1prot_P-littoralis_Contig701.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig701 72461..74055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig701.19.1

>prot_P-littoralis_Contig701.19.1 ID=prot_P-littoralis_Contig701.19.1|Name=mRNA_P-littoralis_Contig701.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
IRQTDVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQITFH
MFNKLFAQEFYHDHVHLPTAGEDQDQVTGLIVQVL*
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mRNA from alignment at P-littoralis_Contig701:72461..74055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig701.19.1 ID=mRNA_P-littoralis_Contig701.19.1|Name=mRNA_P-littoralis_Contig701.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1595bp|location=Sequence derived from alignment at P-littoralis_Contig701:72461..74055- (Pylaiella littoralis U1_48)
ATCCGCCAGACGGACGTGGCGGGGCGCCAGTGCATCCCAGTGGAGCTCAA
GGTAACTCTCGCGTAACCGTATCCTCTCCCATGCTTGCGTTTGCCTGTTT
GTGTGTACCTCCGAGCTTTGCTGACCACTGACCACCGACAGACTAGTAAA
GCCCGCTATTTCCGCAGCAGCACAAGAACACCGAAGAAGCAGCAGAAAAC
AGCTTGGCAGGGCCTTGTGATAACGTACCGCTGTGCAGCTATCATGATGT
AAAAAATCCACAGCAGTACAGGACGGTCACATGACGTACTGCTTTCTGTA
CAAGTACGGCAGCAGTCATACTACAGTAGCCATACCGCTGTGGCTAGACT
TCGGTAGCTAAATGTGAAGAATCAACATATGTGATACAGCAGTAGTACAG
ACGTACCAGGTATGTATGACACGCTTCGTAGAGGCGCCCGTGCATCCCAG
CGGAGCTGTGAAGGTAACTCTCGCGCATGTCTTCTCCCATTTTTGCGTGT
TTGTTTATGTCTCCGAGCTTTGCCGACCTGAGGCAGACTACCGTACTCTA
CAAGTAGCAAATATACAGCGTTGTAACTTGTACGTCCATTTGAGTGTTGT
TTGTGTCTCCGAGCTTTGCGACCTGAGGCAGACCCTGTAGTACAGCAATA
TGCAGCGTAGTACTTGTCCAGCCCCAAAATTTCGGCGGCAAGCACCAGAA
AACAGCACCAGCAGAAAACAGCGTGGCGGGGTCGTTGACGATGAACAGCA
GTGTTGCTGTCATGAGATATCACATGACATGTACGGCAGCACCTATTTGA
ACAAGTGGAATACAGATATAAACATGATACGGACGGCGTCTTACATTCAT
ACTCCGTATATCGTTATGGTTTTAAACATATATGCACAGCAGTATGATTT
CGTACGAAGTTTATCGTACGATAAAGTCATACGGTAGACAGCGGTAGTGT
CCAAAACCACTACTGCTTTGTGCTATTATTGATGGTGTATGAAGCATCAA
CTGCAGGCAGTGTGTGGCCTCTGTCCCAAAATCATTTTTCATGTGTTCGA
TCACGCGCCCTCCCGTGTTTGCTTTCGAGTCCGCCAGAGGCCTCTCGCTA
AAATATGTACTTCGAAGTATACGAGTATAGCTCCTGCGTTTACGTTCCGC
CCCCTGCGAGGCGGCAACCCGTTCCATTCGTCCTCGCGTCACAAGATGTA
GCAAGATTTTCCAGCAGACTCAATACACTGCACGGTGAAAGCGTGAAGCA
TTAGAGATCTGTACATGCCACCACGCTCCAGACCGACAAATTTGCTTGTG
ATACCCCCTTCTTTTTGTCCGGACAGAAAATGGCCCGCAATGAATGCCTC
GTGACTGATTGTCAATTGTTGGGTTTTCTGATTGTCAGGTCCTGGCATCG
CTGCACATACTTGGGAGGGGCAACTTCTTCGAGGATATGACCCAGATGTC
TCACATTAGCGAGCCGACGATACAAATCACCTTTCACATGTTCAACAAGC
TTTTCGCGCAAGAGTTCTACCACGACCACGTGCATCTGCCCACCGCCGGC
GAGGACCAAGACCAGGTGACTGGTCTCATCGTACAAGTATTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig701:72461..74055-

>mRNA_P-littoralis_Contig701.19.1 ID=mRNA_P-littoralis_Contig701.19.1|Name=mRNA_P-littoralis_Contig701.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig701:72461..74055- (Pylaiella littoralis U1_48)
ATCCGCCAGACGGACGTGGCGGGGCGCCAGTGCATCCCAGTGGAGCTCAA
GGTCCTGGCATCGCTGCACATACTTGGGAGGGGCAACTTCTTCGAGGATA
TGACCCAGATGTCTCACATTAGCGAGCCGACGATACAAATCACCTTTCAC
ATGTTCAACAAGCTTTTCGCGCAAGAGTTCTACCACGACCACGTGCATCT
GCCCACCGCCGGCGAGGACCAAGACCAGGTGACTGGTCTCATCGTACAAG
TATTGTGA
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