mRNA_P-littoralis_Contig701.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig701.12.1
Unique NamemRNA_P-littoralis_Contig701.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig701.12.1 vs. uniprot
Match: D8LSZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSZ2_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 1.170e-91
Identity = 188/333 (56.46%), Postives = 222/333 (66.67%), Query Frame = 1 
Query:  301 VFVDPSNGVAGGSNGGALVAEGHGFEQVDVVHLFGLICPDFPEDIIARVARILSQGSRHVRRRHSLDTRHQSSLGKQTSSHPTPAAAAAAETTSTPTSMTAGTVSDPSATVGMISAGSSNGAPLADAAASSPEAAQKAEDVKLLPFEVFLHACNIYFCFQEFFEDVRELFGSLAFRIDGGEGRTNNAGAGRGDNAYAQ-AAREVNLRTLLDQLQVMKAEPRNHLRYMDVRSTEAAVRRGGLGERVTLPAFVACLLLHSDGVTTSLLERTPVDGFAGRLEASLALWSDGR--------TSPQSSSGGG--AYAAAETLGRRKKGSRKGSAAGRG 1266
            +F +P N    G++GG       GFEQ DVVHLFGL+C DFPE+I+ RVARILS+GSR+VR           S   + S      AAAAA   ++PT  T G  SD +  +      + +GA  A A A +P   Q+A+ VK LPF VFL AC +YFCFQEFFED+  LFGSLAFR D     ++ AG GRGD    + AAREVNLR LLDQLQVMKAEPRNHLRY+DVRSTE AVRRGGLGER TLPAF+ACLLLHSD V ++LLE+ P+DG+  RLEA L LWSDG         +SPQS+ G G  A A  ET GRRKKG+RKGS AGRG
Sbjct:    1 MFGEPGNVTTAGADGG-------GFEQKDVVHLFGLVCQDFPEEIVVRVARILSEGSRYVRSPPGTGASPIPSAKSEVSG-----AAAAAAAVASPT--TVGVRSDNNCRI------TPSGADDAGAVADAPT--QEADGVKSLPFAVFLRACIVYFCFQEFFEDIHTLFGSLAFRSDRRRSISSFAG-GRGDGGTKERAAREVNLRILLDQLQVMKAEPRNHLRYIDVRSTEEAVRRGGLGERATLPAFLACLLLHSDDVASALLEKPPMDGYTDRLEACLGLWSDGSGNRGGGRASSPQSTPGDGGRADAVVETSGRRKKGARKGSGAGRG 310
[Close]
BLAST of mRNA_P-littoralis_Contig701.12.1 vs. uniprot
Match: A0A7S3WTD8_9SPIT (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 n=2 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WTD8_9SPIT)

HSP 1 Score: 79.3 bits (194), Expect = 8.380e-13
Identity = 38/132 (28.79%), Postives = 73/132 (55.30%), Query Frame = 1 
Query:   85 ITAQDFLDNPELKVYIEDAVRLVLAARPEKPLELIDEYLQSVLSQDNVVGREFAYINATTRNRRAFVRAVHEVFVD-PSNGVAGGSNGGALVAEGHGFEQVDVVHLFGLICPDFPEDIIARVARILSQGSRH 477
            ++ Q++++  +L +Y++D   L+L  R E+P+E I +Y  S+++  +V+ R+F Y+NA+ RNR AFVR   E F + PS+                    +++ +L  ++CPDFP +++   A +  +   H
Sbjct:   18 LSPQEYMEKHDLLLYLQDVTSLLLQVRTERPIEFIADYFSSIMAGAHVIMRDFQYVNASERNRWAFVRLSLESFAEFPSDSP---------------ITSIELANLLRMLCPDFPLELVENTALLCGESDEH 134
[Close]
BLAST of mRNA_P-littoralis_Contig701.12.1 vs. uniprot
Match: A0A7S0M8G9_9CRYP (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M8G9_9CRYP)

HSP 1 Score: 74.7 bits (182), Expect = 3.600e-12
Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 1 
Query:   85 ITAQDFLDNPELKVYIEDAVRLVLAARPEKPLELIDEYLQSVLSQDNVVGREFAYINATTRNRRAFVRAVHEVFVDPSNGVAGGSNGGALVAEGHGFEQVDVVHLFGLICPDFPEDIIARVARILSQGS 471
            +T Q +LD   + +Y+EDA+ LVL  R ++PL+ I +Y  SVL   +V+ REF++INAT RNR AF+R    +FVD        S   A+  + H         L  ++CPDF +         L +GS
Sbjct:   13 LTPQQYLDRYHIPLYLEDAISLVLETRDDRPLDAIHKYFNSVLQGSHVLLREFSFINATPRNRLAFIR----LFVDTYCSFGPDS---AITFQDHW-------QLTTVLCPDFSQAFHNSALSTLQEGS 127
[Close]
BLAST of mRNA_P-littoralis_Contig701.12.1 vs. uniprot
Match: A0A7S3IWV1_9SPIT (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IWV1_9SPIT)

HSP 1 Score: 74.7 bits (182), Expect = 1.680e-11
Identity = 34/123 (27.64%), Postives = 70/123 (56.91%), Query Frame = 1 
Query:   91 AQDFLDNPELKVYIEDAVRLVLAARPEKPLELIDEYLQSVLSQDNVVGREFAYINATTRNRRAFVRAVHEVFVDPSNGVAGGSNGGALVAEGHGFEQVDVVHLFGLICPDFPEDIIARVARIL 459
            AQ++LD+ ++ +Y++DA++++L  + EKPL+L+ +Y  + L  ++++ RE+A+++AT  NR+ F++ + +VF                    H    +D   +  LIC DFP +++    + L
Sbjct:  101 AQEYLDSHKMSIYLQDAIKIILDRKEEKPLDLLTDYFNTTLKGEHILLREYAFVSATQLNRKCFLQQIRKVFHS--------------TPYYHTITGLDYHQMICLICSDFPRNLMIETIKTL 209
[Close]
BLAST of mRNA_P-littoralis_Contig701.12.1 vs. uniprot
Match: A0A0G4IJU2_PLABS (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJU2_PLABS)

HSP 1 Score: 73.6 bits (179), Expect = 7.080e-11
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:   52 FDPAAEAVMG----GITAQDFLDNPELKVYIEDAVRLVLAARPEKPLELIDEYLQSVLSQDNVVGREFAYINATTRNRRAFVRAVHEVFVDPSNGVAGGSNGGALVAEGHGFEQVDVVHLFGLICPDFPEDIIARVARI 456
            FDPA   V       ++A ++L    +  Y++DA+RL+  +    PL+ +  Y  +VLS DNV+ R FAY+ AT RNRR+F+R V + F          +N    VA  H         L  L+CPD+P D +    RI
Sbjct:    9 FDPAYRRVREDERFAMSADEYLAAHNVVDYVDDAIRLLAESGDGAPLDFLAAYFTNVLSGDNVIFRNFAYVQATPRNRRSFIRHVRDTFQRFD------ANEPTTVASLH--------QLLCLLCPDYPIDYVRCAYRI 133
[Close]
BLAST of mRNA_P-littoralis_Contig701.12.1 vs. uniprot
Match: A0A7S3I0Q3_9SPIT (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3I0Q3_9SPIT)

HSP 1 Score: 73.9 bits (180), Expect = 8.970e-11
Identity = 34/123 (27.64%), Postives = 71/123 (57.72%), Query Frame = 1 
Query:   91 AQDFLDNPELKVYIEDAVRLVLAARPEKPLELIDEYLQSVLSQDNVVGREFAYINATTRNRRAFVRAVHEVFVDPSNGVAGGSNGGALVAEGHGFEQVDVVHLFGLICPDFPEDIIARVARIL 459
            AQ++L+  ++ +Y++DA++++L  R E+PL+L++EY  + L  ++++ RE+A+++AT  NR++F++ V +VF    +                    +D   +  L+C DFP ++I    + L
Sbjct:   62 AQEYLETYKMSIYLQDAIKIILERRDERPLDLLNEYFNTTLRGEHILLREYAFVSATQLNRKSFLQQVKKVFHSTPHYKI--------------ITALDYHQMICLVCSDFPRNLIIETVKTL 170
[Close]
BLAST of mRNA_P-littoralis_Contig701.12.1 vs. uniprot
Match: A0A7S3CUL5_9SPIT (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CUL5_9SPIT)

HSP 1 Score: 72.4 bits (176), Expect = 1.200e-10
Identity = 35/124 (28.23%), Postives = 71/124 (57.26%), Query Frame = 1 
Query:   91 AQDFLDNPELKVYIEDAVRLVLAARPEKPLELIDEYLQSVLSQDNVVGREFAYINATTRNRRAFVRAVHEVFVD-PSNGVAGGSNGGALVAEGHGFEQVDVVHLFGLICPDFPEDIIARVARIL 459
            AQ++LD+ ++ +Y++DA++++L  R EKPL+L+ +Y  + L  ++++ RE+A+++AT  NR+ F++ + +VF   P   +  G               +D   +  LIC DFP  ++    + +
Sbjct:  109 AQEYLDSHKMSIYLQDAIKIILDRREEKPLDLLTDYFNTTLKGEHILLREYAFVSATQLNRKCFLQQIRKVFHSTPYYQIITG---------------LDYHQMICLICSDFPRTLMIETIKTI 217
[Close]
BLAST of mRNA_P-littoralis_Contig701.12.1 vs. uniprot
Match: A0A0H5QNE6_9EUKA (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QNE6_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 2.240e-9
Identity = 39/125 (31.20%), Postives = 63/125 (50.40%), Query Frame = 1 
Query:   85 ITAQDFLDNPELKVYIEDAVRLVLAARPEKPLELIDEYLQSVLSQDNVVGREFAYINATTRNRRAFVRAVHEVFVDPSNGVAGGSNGGALVAEGHGFEQVDVV------HLFGLICPDFPEDIIA 441
            +T + +L    +  Y+ DAVRL+  +    PL  +  Y  ++LS +NV+ R+FAYI  T RNRR+F+R V + + +                    F+Q + +       LF LICPDFP + ++
Sbjct:   21 MTPEQYLTKHNIPEYLADAVRLLAESNDADPLGFLSAYFANILSGENVIFRDFAYIQMTARNRRSFIRHVCDTYQN--------------------FDQSEEITPESLHQLFCLICPDFPFEYVS 125
[Close]
BLAST of mRNA_P-littoralis_Contig701.12.1 vs. uniprot
Match: A0A1R2B7T3_9CILI (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B7T3_9CILI)

HSP 1 Score: 68.9 bits (167), Expect = 3.140e-9
Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = 1 
Query:   67 EAVMGGITAQDFLDNPELKVYIEDAVRLVLAARPEKPLELIDEYLQSVLSQDNVVGREFAYINATTRNRRAFVRAVHEVF-VDPSNGVAGGSNGGALVAEGHGFEQVDVVHLFGLICPDFPEDIIARVARIL 459
            EA     +A++++D  ++ +Y++DA +++L  R EKPLEL+ EY    L  ++V+ R++A+I+A+  NR  F+  ++ +F   P   V                  +D      L+C DFP  +IA  A+IL
Sbjct:   17 EAERVECSAEEYIDYSKISIYLQDATKVMLDRREEKPLELLQEYFNLALKGEHVLLRDYAFISASLYNRSCFMIQMNAIFHSSPYFKVV---------------TALDYHQCLCLLCSDFPRTLIAEAAKIL 133
[Close]
BLAST of mRNA_P-littoralis_Contig701.12.1 vs. uniprot
Match: J9IS68_9SPIT (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IS68_9SPIT)

HSP 1 Score: 67.0 bits (162), Expect = 1.060e-8
Identity = 32/120 (26.67%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:  103 LDNPELKVYIEDAVRLVLAARPEKPLELIDEYLQSVLSQDNVVGREFAYINATTRNRRAFVRAVHEVFVD-PSNGVAGGSNGGALVAEGHGFEQVDVVHLFGLICPDFPEDIIARVARIL 459
            +++ ++ +Y++DA++++L  R +KPL+L++EY  + L  ++++ RE+A+++AT  NR+ F++ V +VF   P   V                  +D   +  L+C DFP  ++    + L
Sbjct:    1 MESHKMSIYLQDAIKIILDRREDKPLDLLNEYFNTTLKGEHILLREYAFVSATPLNRKCFLQQVKKVFHSTPYYKV---------------ISALDYHQMLCLVCSDFPRSLMVETVKTL 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig701.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LSZ2_ECTSI1.170e-9156.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3WTD8_9SPIT8.380e-1328.79Centriolar satellite-associated tubulin polyglutam... [more]
A0A7S0M8G9_9CRYP3.600e-1236.43Centriolar satellite-associated tubulin polyglutam... [more]
A0A7S3IWV1_9SPIT1.680e-1127.64Centriolar satellite-associated tubulin polyglutam... [more]
A0A0G4IJU2_PLABS7.080e-1134.53Centriolar satellite-associated tubulin polyglutam... [more]
A0A7S3I0Q3_9SPIT8.970e-1127.64Centriolar satellite-associated tubulin polyglutam... [more]
A0A7S3CUL5_9SPIT1.200e-1028.23Centriolar satellite-associated tubulin polyglutam... [more]
A0A0H5QNE6_9EUKA2.240e-931.20Centriolar satellite-associated tubulin polyglutam... [more]
A0A1R2B7T3_9CILI3.140e-930.30Centriolar satellite-associated tubulin polyglutam... [more]
J9IS68_9SPIT1.060e-826.67Centriolar satellite-associated tubulin polyglutam... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig701contigP-littoralis_Contig701:18311..24344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog109760.SPPG_01532T1
Preferred nameC11orf49
Model size1275
Max annot lvl2759|Eukaryota
KEGG koko:K16581
Hectar predicted targeting categoryother localisation
Exons9
Evalue7.45e-15
EggNOG OGs28JGI@1|root,2QRVN@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001960.1
Cds size1275
BRITEko00000,ko03036,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig701.12.1prot_P-littoralis_Contig701.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig701 18311..24344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791468.9075353-CDS-P-littoralis_Contig701:18310..183651680791468.9075353-CDS-P-littoralis_Contig701:18310..18365Pylaiella littoralis U1_48CDSP-littoralis_Contig701 18311..18365 -
1680791468.9359057-CDS-P-littoralis_Contig701:19162..192511680791468.9359057-CDS-P-littoralis_Contig701:19162..19251Pylaiella littoralis U1_48CDSP-littoralis_Contig701 19163..19251 -
1680791468.945764-CDS-P-littoralis_Contig701:19980..201401680791468.945764-CDS-P-littoralis_Contig701:19980..20140Pylaiella littoralis U1_48CDSP-littoralis_Contig701 19981..20140 -
1680791468.9595513-CDS-P-littoralis_Contig701:20778..209691680791468.9595513-CDS-P-littoralis_Contig701:20778..20969Pylaiella littoralis U1_48CDSP-littoralis_Contig701 20779..20969 -
1680791468.971023-CDS-P-littoralis_Contig701:21275..216111680791468.971023-CDS-P-littoralis_Contig701:21275..21611Pylaiella littoralis U1_48CDSP-littoralis_Contig701 21276..21611 -
1680791468.9818494-CDS-P-littoralis_Contig701:21870..220141680791468.9818494-CDS-P-littoralis_Contig701:21870..22014Pylaiella littoralis U1_48CDSP-littoralis_Contig701 21871..22014 -
1680791468.995522-CDS-P-littoralis_Contig701:23038..231321680791468.995522-CDS-P-littoralis_Contig701:23038..23132Pylaiella littoralis U1_48CDSP-littoralis_Contig701 23039..23132 -
1680791469.004844-CDS-P-littoralis_Contig701:23353..234531680791469.004844-CDS-P-littoralis_Contig701:23353..23453Pylaiella littoralis U1_48CDSP-littoralis_Contig701 23354..23453 -
1680791469.0188046-CDS-P-littoralis_Contig701:24238..243441680791469.0188046-CDS-P-littoralis_Contig701:24238..24344Pylaiella littoralis U1_48CDSP-littoralis_Contig701 24239..24344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig701.12.1

>prot_P-littoralis_Contig701.12.1 ID=prot_P-littoralis_Contig701.12.1|Name=mRNA_P-littoralis_Contig701.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=425bp
MTHCISPPHVPFGINAGFDPAAEAVMGGITAQDFLDNPELKVYIEDAVRL
VLAARPEKPLELIDEYLQSVLSQDNVVGREFAYINATTRNRRAFVRAVHE
VFVDPSNGVAGGSNGGALVAEGHGFEQVDVVHLFGLICPDFPEDIIARVA
RILSQGSRHVRRRHSLDTRHQSSLGKQTSSHPTPAAAAAAETTSTPTSMT
AGTVSDPSATVGMISAGSSNGAPLADAAASSPEAAQKAEDVKLLPFEVFL
HACNIYFCFQEFFEDVRELFGSLAFRIDGGEGRTNNAGAGRGDNAYAQAA
REVNLRTLLDQLQVMKAEPRNHLRYMDVRSTEAAVRRGGLGERVTLPAFV
ACLLLHSDGVTTSLLERTPVDGFAGRLEASLALWSDGRTSPQSSSGGGAY
AAAETLGRRKKGSRKGSAAGRGAP*
back to top

mRNA from alignment at P-littoralis_Contig701:18311..24344-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig701.12.1 ID=mRNA_P-littoralis_Contig701.12.1|Name=mRNA_P-littoralis_Contig701.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6034bp|location=Sequence derived from alignment at P-littoralis_Contig701:18311..24344- (Pylaiella littoralis U1_48)
ATGACCCACTGCATCTCACCTCCACACGTACCGTTCGGTATCAACGCCGG
CTTCGACCCGGCTGCAGAGGCGGTCATGGGTGGAATCACAGCTCAGGATT
TTCTCGGTAAGTCCAAGGACGAGACAGAGGAGAGCAAAGTACGGAGTACT
TCGTAGATCGTTTGTGTGTTTTCTGTTTTCGTCATTTCATTGTAGAAGTG
TAGTGTGAGTGCTCTCAAACTATCGAATCATACTACAGTACTGCACGTAT
GATAGTTGTATCAAACATACAGGTATATACAAATGATACTCCGGAGTATG
ATTGTATTTGAGATGCGTTACAAGTAACAGGAGTAGCCTTCCGCTGCTGC
TGTGATGCAAGTGATTTTCTTCCTAACGTGAAGAAATAAGCATCACTGCT
TTGACAAATACAGTGGTCTGGAAATAGTTGTGTTGGGTCGTGATGCACAG
CATACGTGATGCGCTCAAGAGAGAAATTGACTTTCCTTCAATATGTTGTT
TGATCCGCAAATATATTGTTGTTTACTGGCACTTGTGCGATGACACGCGG
ACGGTATTGTGGCGATCCATCGCTGTCCAACCGAAGAGAAAGCGGATCGA
GCACCGACCGGACAAAACTACTCCGTCAAGATGTATGGATGGAATTTTTA
GGCTGGTACCAGTAATATTTTTTGGTCACTTCTGTGAAAGAATAGGCTTA
ATTCTAATCGATGTGCATCACAGTCAAACCACCACACTCAACAAACCACA
GAGTGCTCTGTTTACAATATCATCCCCGTACGTATGATATAGTGTGTCGT
TCCCTCAAGCACGAATTATGTATCTCCCCCAACATCGCCAGTAAACATTT
TTGGTCCTTCTTTGTCACCCTGACTGACCTATTTCGCGCAGATAACCCGG
AGCTCAAGGTGTACATTGAGGACGCGGTGCGTCTTGTGCTCGCTGCCCGA
CCAGAGAAACCTCTTGAGCTTATCGACGAGTACTTACAAAGGTGCGACTT
GTGAGAGAGAGAGAGAGGGAAAATTCGTGCCAAATCCACGCCCATCCTTG
ACCACCAGAACGTCCGATAACCCGGAGTAACCAAGTGTTGTTGCGCGCGG
AGAGACAGTCCTTTCCCTACACAACTACACGCCATTTCTAACCATTTTTT
CGTTACCACCGCGCCTCTGGCTTGCGGTGCTCAAACTTGAACTGAACGCG
GCATCAAATCAGCGTGCTGAGCCAAGACAACGTGGTGGGGAGAGAATTCG
CCTACATCAACGCTACGACGCGCAACCGCCGGGCCTTCGTCCGCGCCGTC
CATGAGGTAGACCATAAGATCCGGCAGACTAGAGCCGAAAATACGTGAAT
TATATTCATCAGAGAGCAGCGCATACGGCAAATATGTCTAGAATCAGCAG
CAAAAAATGAAATGTTAAATGTGGAAGTTTTTTTTCGTTCTCTCTTCCAA
GCTTCTCCGGAGGGTATTGGAAGAAAGTGCCCAATTTACTTTCACCACTA
GTCCGAGGCATGAGATCCCAGGAGTGCAAGAAAATAAATGAGTGTTACCC
CAGACAGACGTTTGCGAGCAACTATTGCAGGACAGGAATGAGCTCGTTCA
TGTTCGTTGGTTGTTGTTGAGTATATTTCGAACAAATGGCCAGAGTCCGG
CAACCTGGCGTTCATTCACAGGCGCATATTTAAAAATCCGTGCATTTCAT
CTTGACTTTCAAACTCTTATGCTCGACTATTCGTGGCGCCGTCGACTTGC
AACGACGCAAAGCAAGATGCTGCATTTATTTATGAAGAGAAAGATCTGTC
TTCCACAGACGTTATTTGTGGGAGGTGTACTCTTTGTGAGAGTCACTTCC
ACATTATCCCCCCTTTTGAGACTTTTAGTTCATGTGCTCATGAGAAGAAA
TGTTTAATAGAGGTAACCGGAACCCAACCGACTGGCGACAAACCATTCCC
TTTTTTTAACAACCTTTAGCACGAGTAAATGGATGGGCTTTCTACGTCCA
CGTCATATAAAAATCTGCTGTTAAAATAGTCTGCACTTCGGTCGCTCGCC
ATTTCCCCCCCAACCCATTCCCTTTTTGTTTTGTTCGAAAAATTGGAAAC
AACAAAGATGTGTGTGTGGCGGAGATTGAACCCGGAGTTTTAGCCAACCT
TCGTAAGACGATTTCTTCGACGACAACAACATGAAAAGAGGGTTGTACCT
TCGACAGAAATGAGGGTGGGAGTGCACTCTTTCTGAAGGTCATTCCCACA
ACTGGACACAAAACAAGACAGCAAATTTCGCCGCTCCTCGTGTGCTTTTC
TCCCTCCGCAAATGAAACATCAATACGTAGGTGTTTGTCGACCCCAGCAA
TGGCGTGGCTGGTGGCAGCAACGGAGGAGCTTTGGTGGCTGAGGGACACG
GCTTCGAGCAGGTGGACGTCGTCCATCTCTTCGGACTCATCTGCCCGGAT
TTTCCGGAAGACATCATTGCTCGGGTAGGTAATATTTCCCTATTTTCCGT
ATCATACCGAGAGACAAGATTGCGCATATAGCGGTCTCGTACGTATGAAA
CGTGTCAGATGTGTCCGCAGCGCCCTGCAGTACACATGCAGTAATTCTGC
TGATGGCTGAACTGAAGGAAGGGTCCGGTTGTCTTCTGAGAGGCATTTTT
TGTGGCATATATACAAGTATATGCAGCGCGTATAGAAATATTCGAAGCTC
AATATTTGTTGTCACTGTGTGTGTTGGTCACAGGTAGCCAGGATTCTGTC
CCAGGGGTCTAGACACGTCCGCAGGCGACATAGCCTAGACACGCGCCATC
AATCTTCTCTCGGAAAACAAACGTCGTCGCACCCGACCCCAGCGGCGGCA
GCAGCAGCGGAAACAACATCGACACCGACATCGATGACTGCAGGGACTGT
TTCAGATCCGTCGGCGACGGTCGGCATGATCAGCGCTGGTTCTAGCAATG
GCGCGCCGCTTGCCGATGCTGCTGCTTCTTCCCCTGAGGCCGCACAAAAG
GCAGAGGACGTCAAGTTGCTACCTTTCGAAGTGTTCCTTCACGCGTGTAA
CATCTACTTTTGTTTTCAGGTTTGTTCGGCGCTTTTCGGTAGAGGAGTGC
ACGCGCACGCACATGGCCTTGGCATGTCTGTGTGGGGATGGGGCGTCGGG
ATACTGCGTTGCCCCTTTCGGGAACCACCGTGCCCTCTCCTGATTGAGGA
CTTTCACAAGAATCATAACGTCGGAACGTCATTGACCTGTCCCTCGCTTG
CGGCAGTGCATGTTCACATTTCGGTGTGATTGTCTCTTCGCTGCTTCCCA
AAGGCTTGAAGCGGTGAACGAACACTTCCAACGGAAATACAAACATTACT
TTGTAAACTTTGTCGGCGAGGACAGGAATTTTTTGAAGACGTGCGGGAGC
TCTTCGGCTCCTTGGCATTCAGGATTGATGGTGGGGAAGGGAGGACTAAC
AACGCGGGGGCGGGCAGGGGAGACAACGCTTATGCGCAGGCGGCACGCGA
GGTCAATCTTCGGACACTATTGGACCAGCTTCAGGTCATGAAAGCGGAGC
CACGGAATCATCTGAGGTACAAAGAGTTGCTAGGGGTTTCCAGCAATTTT
GTCTGCGTTCGAGCGTTGTAAAATATAGATTTAGCGACAGCAGTGGTTCC
TCACGTGTCACACAAGGTGCGCGTGATAAATGAAAGACAGGAGGAAGATA
AGCTGGCTCGGTATCTTCAGCGCCACTCGAGCATCTGCACCGCTCAGTGG
TTTGAACGCTATCCTCATAGGGTTTTTTCGACAAGCAGTGAACAGATAAG
GCCTTTCAAACCAGCTGCGGTGCGCCCCTCGCTTTGAAGCGGAGTACCTC
GTTTATTTGATATGCCACACCCTGGATCATACAGTTTTAGGCCCCCTCGT
CTAGAGAAGGGTTTCTTTCTTGCTCCCCATGCCCCTGACTAAGGGACAGG
AGGACACGCACGCATGCATGCATCTAATCGACGTGCTACGGACTGATGCT
GTGTTGGCTTTGTTCTTCTGCCTGCACCCAACACCAATACACGAGATCCC
TACGAAGCGCGTGGAAACCCTTTGCTACCACCACACGTGCGATGCTCATT
GGACTGCCCTCCCCCGGTTCAACCAAGGCAGGCAGGTGTGAAACACGTAG
TAGGGCTTGATACCCTCCACCTCACTTACCAAATATGCCACAATCAAATG
GCAGGTACATGGACGTGAGATCTACCGAGGCAGCGGTTCGAAGAGGGGGG
CTAGGGGAGCGAGTGACGCTTCCGGCTTTCGTGGCGTGCTTACTGCTCCA
TTCGGACGGGGTGACCACGAGCCTATTGGAGAGAACTCCCGTTGATGGTT
TCGCCGGCCGTCTGGTACGCAGGACATTTCAAACAACAGGCATAATACGT
GCCAGCTTCCCCTTTCTCTCTGAGTGTAGTTGTGTGTGTTTACATCCCAT
TTATTCTGGGTACTAGTCTACACCGCTCGGTTTGAAGTGGGTGCACCGGT
AGCTGGGCGTTCATAGTACGTGCTGGATGATTGGGGTTTGAAGTTGCAGC
CGGGTGCTGCGTTCGTATCTATCACAGTGTGTATATGCGTGAAAAGAGGG
AATATTCGTCCTCGATAGATGTTGGGGAATTGTTGCCCGTTCCATAAAGA
ATATCTCTACCGTACCCCCCCCCTCCCCTCCTTTTCATGAGCCTTTCTCA
TATCTGCCAGGCCAGATGAAGGCTTCTAGCCGCGGTACACGACCAGCTGT
CGGTGATTCGATTCAGACAGTACTTTCCTTTAATTTTTTTGACGCGGACG
CACCACCTCCTCCACGTCTGTCTAAAAAACGTTTACAAATCTAATCCTGG
TGGTCCCACCCTTTTATAAACTGCTGGATCTTTTTTCTTTTTCTTTTATC
ATGCGAAAAAAAAAAGTAAATCAGACAGCAGTGGCGAGATCAGAATCCAT
GTCTTTTGACGCCAAAGAGAACCGCCGTGTGTCCGCGATACCACCAATGC
GAAAAGAGGGAATCGTCCTAGACGACAGACTTCGCAACTTCACCTCCACA
GATGGATGACTTTTCGGCGGACACGGTGGGGTGTGTTGTTCAGGAGGCAA
GCTTAGCCCTGTGGAGTGACGGGCGGACCAGCCCCCAATCATCTTCGGGA
GGCGGAGCCTACGCCGCCGCGGAGACGCTGGGGTAAGGGAATAGAGATGA
AGCTGGAAGCTGGCATCTACGATGCGCGAAGTGCTGAACACCCCCTGCGT
TGAAACGGACCCCCGGCCGATTCTCGGGGTCAAATGATGATTGAAACTTA
ACCTTGCTTGTTGGAATCAATCAATTCCGAGTATAGCGGCAATTTCACCC
CGCCCTAACACTCAGTCAATGAGTCACACAGCCCCGTTCAATCTTCTTTC
GTCCCTCTCGTTCCAAGCTGCACGACAAGTAGTATCGTTATGTGTAGTTT
CACACGACCTGACTGAATTCCAAGCGTTGGGGTGAGCGTGAATTCTCTTC
TTCTTCTGATGATACCTGGTAATATTTAGCGCGATTCTCTTCTTCTACTG
ACAAATACCTGTTGATAGTTGTGACATGCATCAGCAGTATGTTTTTTTTT
TGCTGTAATGTAAAGGAAACGATATTGATAAAATTGGTTTCGTTTACGGG
TTGACTGCCTGAATCGATAAGACTGACCTCCTTCTATCAACCGTCCCCCA
ACCCCCGCACCCCCCTCTCACTCACCTCCCCTCGCTCGCGCTAACTCCCT
TCCTGCTCGATGCTTATCGCACGCAAACCTCGCATGTCTGTTGCCATCAT
TCTCGTTTTCGACAAACCTATAGAAAAAAGAAGGGCAAAAAAAAAGTGGG
CTTTCACGTGGGTGGTGGGTTTCCGATGCCGAGGGGCTTCGTCTGTGTCT
GCTGTAATTTCGTTCGATTGATGTCTGACGGTCACGACTGTGCCGTCGTT
TTTTTTGCCGTTCGTTGCCGTTCTACCAGGCGAAGAAAGAAAGGATCACG
GAAGGGGAGCGCCGCTGGGAGGGGGGCACCCTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig701:18311..24344-

>mRNA_P-littoralis_Contig701.12.1 ID=mRNA_P-littoralis_Contig701.12.1|Name=mRNA_P-littoralis_Contig701.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1275bp|location=Sequence derived from alignment at P-littoralis_Contig701:18311..24344- (Pylaiella littoralis U1_48)
ATGACCCACTGCATCTCACCTCCACACGTACCGTTCGGTATCAACGCCGG
CTTCGACCCGGCTGCAGAGGCGGTCATGGGTGGAATCACAGCTCAGGATT
TTCTCGATAACCCGGAGCTCAAGGTGTACATTGAGGACGCGGTGCGTCTT
GTGCTCGCTGCCCGACCAGAGAAACCTCTTGAGCTTATCGACGAGTACTT
ACAAAGCGTGCTGAGCCAAGACAACGTGGTGGGGAGAGAATTCGCCTACA
TCAACGCTACGACGCGCAACCGCCGGGCCTTCGTCCGCGCCGTCCATGAG
GTGTTTGTCGACCCCAGCAATGGCGTGGCTGGTGGCAGCAACGGAGGAGC
TTTGGTGGCTGAGGGACACGGCTTCGAGCAGGTGGACGTCGTCCATCTCT
TCGGACTCATCTGCCCGGATTTTCCGGAAGACATCATTGCTCGGGTAGCC
AGGATTCTGTCCCAGGGGTCTAGACACGTCCGCAGGCGACATAGCCTAGA
CACGCGCCATCAATCTTCTCTCGGAAAACAAACGTCGTCGCACCCGACCC
CAGCGGCGGCAGCAGCAGCGGAAACAACATCGACACCGACATCGATGACT
GCAGGGACTGTTTCAGATCCGTCGGCGACGGTCGGCATGATCAGCGCTGG
TTCTAGCAATGGCGCGCCGCTTGCCGATGCTGCTGCTTCTTCCCCTGAGG
CCGCACAAAAGGCAGAGGACGTCAAGTTGCTACCTTTCGAAGTGTTCCTT
CACGCGTGTAACATCTACTTTTGTTTTCAGGAATTTTTTGAAGACGTGCG
GGAGCTCTTCGGCTCCTTGGCATTCAGGATTGATGGTGGGGAAGGGAGGA
CTAACAACGCGGGGGCGGGCAGGGGAGACAACGCTTATGCGCAGGCGGCA
CGCGAGGTCAATCTTCGGACACTATTGGACCAGCTTCAGGTCATGAAAGC
GGAGCCACGGAATCATCTGAGGTACATGGACGTGAGATCTACCGAGGCAG
CGGTTCGAAGAGGGGGGCTAGGGGAGCGAGTGACGCTTCCGGCTTTCGTG
GCGTGCTTACTGCTCCATTCGGACGGGGTGACCACGAGCCTATTGGAGAG
AACTCCCGTTGATGGTTTCGCCGGCCGTCTGGAGGCAAGCTTAGCCCTGT
GGAGTGACGGGCGGACCAGCCCCCAATCATCTTCGGGAGGCGGAGCCTAC
GCCGCCGCGGAGACGCTGGGGCGAAGAAAGAAAGGATCACGGAAGGGGAG
CGCCGCTGGGAGGGGGGCACCCTGA
back to top