mRNA_P-littoralis_Contig701.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig701.2.1
Unique NamemRNA_P-littoralis_Contig701.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig701.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig701contigP-littoralis_Contig701:1667..2629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size949
Hectar predicted targeting categorysignal anchor
Exons2
Cds size522
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791468.551802-UTR-P-littoralis_Contig701:1666..18741680791468.551802-UTR-P-littoralis_Contig701:1666..1874Pylaiella littoralis U1_48UTRP-littoralis_Contig701 1667..1874 -
1680791468.5897846-UTR-P-littoralis_Contig701:2410..26291680791468.5897846-UTR-P-littoralis_Contig701:2410..2629Pylaiella littoralis U1_48UTRP-littoralis_Contig701 2411..2629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791468.5631337-CDS-P-littoralis_Contig701:1874..19991680791468.5631337-CDS-P-littoralis_Contig701:1874..1999Pylaiella littoralis U1_48CDSP-littoralis_Contig701 1875..1999 -
1680791468.5778766-CDS-P-littoralis_Contig701:2013..24101680791468.5778766-CDS-P-littoralis_Contig701:2013..2410Pylaiella littoralis U1_48CDSP-littoralis_Contig701 2014..2410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig701.2.1prot_P-littoralis_Contig701.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig701 1875..2410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig701.2.1

>prot_P-littoralis_Contig701.2.1 ID=prot_P-littoralis_Contig701.2.1|Name=mRNA_P-littoralis_Contig701.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
MHGGGCCCVAYNMSCSSTRNIHKRPMFVLLYFLFRAGVLTVLRHTSLILC
FLLCTWSEHFIFFSRKVGEVRVYDSCMYVTFNERYVLPGVFFLLFFLRLD
ERGRHHPKPCTEGRRKREKKYKIIAQLDAAKKPIRVSSIAAGINAPELKF
SQYQRHRTKYFVCDTRYDVSVCA*
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mRNA from alignment at P-littoralis_Contig701:1667..2629-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig701.2.1 ID=mRNA_P-littoralis_Contig701.2.1|Name=mRNA_P-littoralis_Contig701.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=963bp|location=Sequence derived from alignment at P-littoralis_Contig701:1667..2629- (Pylaiella littoralis U1_48)
AGGTCTACACAGCTGGCGTATTGTGCTTCCAAGTAATTTTATGTGTACCA
GTTTGTGGGTCGCGTGCTCCCTTGTTGTTTTTTTACTGCGGCAGAAAGGG
TGCAACTATGGATGTGTATCATATCGTGAAGAAGACAGGGGGGTTGTGCG
TCGGTGGATCGGTTTTCGGTATTGCCGTCGTTGTCAATGGGAGGTACCAC
AGAGTAAAGATAGCGCGGCATGCACGGTGGTGGTTGTTGTTGCGTTGCTT
ACAACATGAGTTGTTCCTCGACAAGGAACATTCACAAGCGCCCCATGTTT
GTTCTCTTGTATTTCCTTTTCCGTGCGGGAGTATTGACTGTTCTTCGTCA
TACGTCGTTGATATTATGTTTCCTCTTGTGCACTTGGTCGGAGCATTTCA
TATTTTTTAGTCGAAAAGTTGGAGAAGTCCGGGTTTACGACAGCTGTATG
TATGTAACTTTTAATGAGCGTTATGTGTTACCCGGAGTATTTTTTTTGCT
TTTTTTTCTCCGATTGGATGAAAGAGGCAGACACCATCCAAAGCCATGCA
CGGAAGGGAGAAGGAAGAGAGAGAAAAAATATAAAATTATTGCGCAGCTT
GATGCTGCTAAAAAACAGGGCCAGCGCGATCTATCCGTGTGTCATCTATC
GCGGCTGGAATTAATGCCCCCGAGTTGAAATTTAGCCAGTACCAACGGCA
TCGTACGAAGTATTTTGTATGTGATACTAGATATGACGTATCGGTATGTG
CTTGATGCATATCTCACCTGGTGCTCGTACATCTGTATGTAATGTATATA
CCAGGTGAGGCGTAAGGCCGTGTTGCACTACTGAAGAATATACATCCTAG
TGACACCAATTATCAACACGCCGTATCGATGACTAGATTGTATCGAGTGT
GCCCAAAAATTCATCACATATATAGACAGATTGTGTTATTATCGTGTGAG
TGTGGTATGTCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig701:1667..2629-

>mRNA_P-littoralis_Contig701.2.1 ID=mRNA_P-littoralis_Contig701.2.1|Name=mRNA_P-littoralis_Contig701.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig701:1667..2629- (Pylaiella littoralis U1_48)
ATGCACGGTGGTGGTTGTTGTTGCGTTGCTTACAACATGAGTTGTTCCTC
GACAAGGAACATTCACAAGCGCCCCATGTTTGTTCTCTTGTATTTCCTTT
TCCGTGCGGGAGTATTGACTGTTCTTCGTCATACGTCGTTGATATTATGT
TTCCTCTTGTGCACTTGGTCGGAGCATTTCATATTTTTTAGTCGAAAAGT
TGGAGAAGTCCGGGTTTACGACAGCTGTATGTATGTAACTTTTAATGAGC
GTTATGTGTTACCCGGAGTATTTTTTTTGCTTTTTTTTCTCCGATTGGAT
GAAAGAGGCAGACACCATCCAAAGCCATGCACGGAAGGGAGAAGGAAGAG
AGAGAAAAAATATAAAATTATTGCGCAGCTTGATGCTGCTAAAAAACCTA
TCCGTGTGTCATCTATCGCGGCTGGAATTAATGCCCCCGAGTTGAAATTT
AGCCAGTACCAACGGCATCGTACGAAGTATTTTGTATGTGATACTAGATA
TGACGTATCGGTATGTGCTTGA
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