mRNA_P-littoralis_Contig700.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig700.2.1
Unique NamemRNA_P-littoralis_Contig700.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig700.2.1 vs. uniprot
Match: A0A6H5JT94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT94_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 7.370e-21
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    1 QVLQEVLICDGEEYVHLTPDEQKSRSAWFIDMKYVAAVEKKRWGDQRRWAYHVVGLNSDINVINRLHASRTPSHPTIDLSTTD 249
            +VL++  +CDGEEYV+L  DEQK+RS WFI  KYVAAVEK +WG  +R AY VV L+SD   I RL  SR P+  TID S+ D
Sbjct:  158 KVLEDAFLCDGEEYVNLDSDEQKNRSGWFIGTKYVAAVEKTKWGQNQRSAYQVVTLDSDPANIQRLQTSRRPARTTIDPSSDD 240
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BLAST of mRNA_P-littoralis_Contig700.2.1 vs. uniprot
Match: A0A6H5JWD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD9_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.740e-8
Identity = 25/55 (45.45%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   73 RSAWFIDMKYVAAVEKKRWGDQRRWAYHVVGLNSDINVINRLHASRTPSHPTIDL 237
            R+++ + + ++AAVEKK+WG Q  W YH+V L++D+ +I RL  S+TP+   IDL
Sbjct:    6 RASYILGITFIAAVEKKKWGHQNCWGYHIVALSNDVTIIERL--SKTPTLEAIDL 58
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BLAST of mRNA_P-littoralis_Contig700.2.1 vs. uniprot
Match: A0A6H5K6D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 9.040e-8
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   73 RSAWFIDMKYVAAVEKKRWGDQRRWAYHVVGLNSDINVINRLHASRTPSHPTIDL 237
            R+++ +   ++AAVEKK+WG Q  W YHVV L+ D+ +I RL  S+TP+   IDL
Sbjct:    6 RASYILGTTFIAAVEKKKWGHQNCWGYHVVALSDDVTIIERL--SKTPTLEAIDL 58
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BLAST of mRNA_P-littoralis_Contig700.2.1 vs. uniprot
Match: A0A6H5K3I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.390e-7
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:   73 RSAWFIDMKYVAAVEKKRWGDQRRWAYHVVGLNSDINVINRLHASRTPSHPTIDLSTTDPASPAHTSPKREASS 294
            R+++ +   ++AAVEKK+WG Q  W YH+V L++D+ +I RL  S+TP+   IDL++   A     S  R  SS
Sbjct:  117 RASYILGTTFIAAVEKKKWGHQNCWGYHIVALSNDVTIIERL--SKTPTLEAIDLASRPTAGVRSPSRSRADSS 188
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BLAST of mRNA_P-littoralis_Contig700.2.1 vs. uniprot
Match: A0A6H5JX79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX79_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.930e-7
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   64 QKSRSAWFIDMKYVAAVEKKRWGDQRRWAYHVVGLNSDINVINRLHASRTPSHPTIDL 237
            + +R+++ +    +AAVEKK+WG Q  W YH+V L++ + +I RL  S+TP+   IDL
Sbjct:   55 KNARASYIVGTTSIAAVEKKKWGHQNCWGYHIVALSNGVTIIERL--SKTPTPEAIDL 110
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BLAST of mRNA_P-littoralis_Contig700.2.1 vs. uniprot
Match: A0A6H5L7M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7M6_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 3.080e-6
Identity = 23/55 (41.82%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   73 RSAWFIDMKYVAAVEKKRWGDQRRWAYHVVGLNSDINVINRLHASRTPSHPTIDL 237
            R+++ + + ++AAVEKK+WG Q  W YH+  L++D+ +I RL  S+TP+    DL
Sbjct:  146 RASYILGITFIAAVEKKKWGHQNCWGYHIAALSNDVTIIERL--SKTPTVEANDL 198
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig700.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JT94_9PHAE7.370e-2157.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWD9_9PHAE3.740e-845.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6D8_9PHAE9.040e-847.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3I6_9PHAE1.390e-740.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX79_9PHAE4.930e-741.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7M6_9PHAE3.080e-641.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig700contigP-littoralis_Contig700:3858..4343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size488
Hectar predicted targeting categoryother localisation
Exons1
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791467.4164536-CDS-P-littoralis_Contig700:3857..43431680791467.4164536-CDS-P-littoralis_Contig700:3857..4343Pylaiella littoralis U1_48CDSP-littoralis_Contig700 3858..4343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig700.2.1prot_P-littoralis_Contig700.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig700 3858..4343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig700.2.1

>prot_P-littoralis_Contig700.2.1 ID=prot_P-littoralis_Contig700.2.1|Name=mRNA_P-littoralis_Contig700.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
QVLQEVLICDGEEYVHLTPDEQKSRSAWFIDMKYVAAVEKKRWGDQRRWA
YHVVGLNSDINVINRLHASRTPSHPTIDLSTTDPASPAHTSPKREASSSA
SKKTPSTKAKRTKQPVPPPSDTSSSAADDAESDDDFIADSDDGNDDSHDE
YVISDDDDSEES
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mRNA from alignment at P-littoralis_Contig700:3858..4343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig700.2.1 ID=mRNA_P-littoralis_Contig700.2.1|Name=mRNA_P-littoralis_Contig700.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig700:3858..4343+ (Pylaiella littoralis U1_48)
CAGGTGCTCCAGGAGGTCCTCATCTGCGACGGCGAGGAATACGTCCACCT
GACCCCCGACGAACAGAAGTCCCGCTCCGCGTGGTTCATCGACATGAAGT
ACGTCGCGGCCGTCGAGAAGAAACGGTGGGGTGACCAGCGCAGGTGGGCC
TACCACGTCGTCGGCCTTAACAGCGACATCAACGTCATCAACCGTCTTCA
CGCTTCCCGCACCCCTTCCCATCCCACCATCGACCTCTCCACGACCGACC
CGGCATCTCCCGCCCACACCTCCCCCAAACGGGAGGCTTCGTCGTCCGCT
TCAAAGAAAACGCCTTCCACCAAAGCTAAGCGGACGAAGCAACCCGTGCC
ACCCCCCTCCGACACATCCTCTTCCGCTGCCGACGACGCCGAGAGCGATG
ACGACTTCATCGCCGACAGCGACGACGGCAACGACGACAGCCACGACGAG
TACGTCATCTCCGACGATGACGATTCTGAAGAGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig700:3858..4343+

>mRNA_P-littoralis_Contig700.2.1 ID=mRNA_P-littoralis_Contig700.2.1|Name=mRNA_P-littoralis_Contig700.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig700:3858..4343+ (Pylaiella littoralis U1_48)
CAGGTGCTCCAGGAGGTCCTCATCTGCGACGGCGAGGAATACGTCCACCT
GACCCCCGACGAACAGAAGTCCCGCTCCGCGTGGTTCATCGACATGAAGT
ACGTCGCGGCCGTCGAGAAGAAACGGTGGGGTGACCAGCGCAGGTGGGCC
TACCACGTCGTCGGCCTTAACAGCGACATCAACGTCATCAACCGTCTTCA
CGCTTCCCGCACCCCTTCCCATCCCACCATCGACCTCTCCACGACCGACC
CGGCATCTCCCGCCCACACCTCCCCCAAACGGGAGGCTTCGTCGTCCGCT
TCAAAGAAAACGCCTTCCACCAAAGCTAAGCGGACGAAGCAACCCGTGCC
ACCCCCCTCCGACACATCCTCTTCCGCTGCCGACGACGCCGAGAGCGATG
ACGACTTCATCGCCGACAGCGACGACGGCAACGACGACAGCCACGACGAG
TACGTCATCTCCGACGATGACGATTCTGAAGAGTCG
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