mRNA_P-littoralis_Contig118.112.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig118.112.1
Unique NamemRNA_P-littoralis_Contig118.112.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig118.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig118contigP-littoralis_Contig118:460871..463991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2492
Hectar predicted targeting categoryother localisation
Exons2
Cds size1650
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789493.2084448-UTR-P-littoralis_Contig118:460870..4615361680789493.2084448-UTR-P-littoralis_Contig118:460870..461536Pylaiella littoralis U1_48UTRP-littoralis_Contig118 460871..461536 -
1680789493.2191825-UTR-P-littoralis_Contig118:462165..4621811680789493.2191825-UTR-P-littoralis_Contig118:462165..462181Pylaiella littoralis U1_48UTRP-littoralis_Contig118 462166..462181 -
1680789493.2370574-UTR-P-littoralis_Contig118:463831..4639911680789493.2370574-UTR-P-littoralis_Contig118:463831..463991Pylaiella littoralis U1_48UTRP-littoralis_Contig118 463832..463991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789493.2279675-CDS-P-littoralis_Contig118:462181..4638311680789493.2279675-CDS-P-littoralis_Contig118:462181..463831Pylaiella littoralis U1_48CDSP-littoralis_Contig118 462182..463831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig118.112.1prot_P-littoralis_Contig118.112.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig118 462182..463831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig118.112.1

>prot_P-littoralis_Contig118.112.1 ID=prot_P-littoralis_Contig118.112.1|Name=mRNA_P-littoralis_Contig118.112.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=550bp
MSSKRTRSGCTKPGYGVVEGTKTAEVRSRHAKDGKVNVYGKKCTHPGCTK
RPSYGVAGTKTAEFCSGHARKGMANVKNKMCTHPGCTKQPSYGVAGTNTA
VFCFGHAKDGMISTHRKRCSYPGCTKRPSYGVAGTTAEFCSGHSKDGMVD
VYNKKCTHPGCTKTPSYGVAGTNTVEFCSGHAKDGMVNVKNKKCTHTGCT
KQPHFGVAGTTTAVFCSGHAKDGMVDVYNKKCDHPGCTKRRSFGATGTNR
VEFCSGHAKGGMVDVANKKRCSHPGCTKKPSYGVAGTKTPKFCSGHAKGR
MVDIKNKKCSHLGCTRRPHFGAADTKTAEFCSGHAKDGMVDVYSKKCTHP
GCSKAPSYGLAGTKTAEFCSGHAKDGMMNVKTKRCNHRGCTTGQSHGAAG
SVRTFCALYAQKGMVNLNTARTSSGARGRSGNPQTLDEGVGLDRGTARRA
SAGEKRKRRLPSPTQTGTYPGGNKASSKRTRQAPFHTPVTPTPAEPAADE
SHTRVGDSPSMKPNSVVMKTELLAVSSKTDPTEAFPTRRISHGRGRWLV*
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mRNA from alignment at P-littoralis_Contig118:460871..463991-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig118.112.1 ID=mRNA_P-littoralis_Contig118.112.1|Name=mRNA_P-littoralis_Contig118.112.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3121bp|location=Sequence derived from alignment at P-littoralis_Contig118:460871..463991- (Pylaiella littoralis U1_48)
GAGGCACACACTGCTTCATAGTGCGCGTATCACAAGCACAGAGACCGAGG
GGCAGGAAAGTGTCCCCCCGTAACCGGCGAACCTCTCTCTCCTAGATATC
GAAGTGCTGCCGTCGCACAGCTGTCCTTCCTTGTAATCTACCTTCTTTGC
TCTAAATAGGATGTCGAGCAAGCGCACCCGCAGTGGCTGCACCAAGCCGG
GATATGGAGTAGTGGAAGGTACCAAGACAGCGGAGGTCCGCTCTCGACAC
GCAAAGGACGGGAAGGTGAACGTGTACGGCAAGAAATGCACGCACCCTGG
CTGCACCAAAAGACCGAGCTATGGCGTGGCAGGTACCAAAACGGCGGAGT
TCTGCTCTGGCCACGCAAGAAAAGGGATGGCGAACGTCAAGAACAAGATG
TGCACCCACCCTGGCTGCACCAAGCAGCCGAGCTATGGCGTGGCAGGTAC
CAACACGGCGGTGTTCTGCTTTGGACATGCCAAGGACGGGATGATATCCA
CCCATAGAAAGAGGTGCAGCTACCCTGGCTGCACCAAACGCCCGAGCTAC
GGTGTGGCGGGAACCACGGCGGAGTTCTGCTCTGGGCACTCCAAGGACGG
GATGGTGGACGTCTACAACAAGAAGTGCACCCACCCTGGCTGCACCAAAA
CGCCGAGCTATGGCGTGGCAGGTACCAACACGGTGGAGTTCTGCTCTGGC
CACGCAAAAGACGGAATGGTGAATGTCAAGAACAAGAAGTGCACCCACAC
TGGCTGCACCAAGCAGCCGCACTTTGGCGTGGCAGGTACCACCACGGCGG
TGTTCTGCTCTGGCCACGCCAAGGACGGGATGGTGGACGTTTACAACAAG
AAATGCGACCACCCTGGCTGCACCAAGCGGCGGAGCTTTGGCGCGACGGG
TACCAACAGGGTGGAGTTCTGCTCTGGACACGCAAAGGGCGGCATGGTGG
ACGTGGCCAACAAGAAGAGGTGCAGCCACCCTGGCTGCACCAAAAAACCG
AGCTATGGCGTGGCAGGTACCAAGACGCCGAAGTTCTGCTCTGGTCACGC
CAAGGGCAGGATGGTGGACATAAAGAACAAGAAATGTTCTCACCTTGGCT
GCACCAGGCGGCCGCACTTTGGCGCGGCAGACACGAAAACAGCAGAGTTT
TGCTCTGGACACGCCAAGGACGGGATGGTGGACGTCTACAGCAAGAAGTG
CACACACCCTGGCTGCAGTAAAGCGCCGAGCTATGGCTTGGCAGGTACCA
AGACGGCGGAGTTCTGCTCTGGACATGCCAAGGACGGAATGATGAACGTC
AAGACCAAGAGGTGCAACCACCGTGGTTGCACCACGGGGCAGAGCCATGG
CGCGGCCGGCAGTGTCCGCACGTTTTGCGCCCTATACGCTCAAAAAGGCA
TGGTGAACCTCAACACTGCGAGGACCTCAAGTGGTGCACGCGGTAGAAGT
GGTAACCCGCAAACGTTGGATGAAGGTGTTGGACTGGATCGGGGTACCGC
CCGCCGTGCTAGTGCAGGTGAAAAGAGGAAGCGACGCTTGCCTTCACCAA
CCCAGACGGGGACATACCCCGGCGGGAACAAAGCGAGCAGCAAGCGCACC
CGCCAGGCCCCCTTCCATACACCTGTGACTCCGACCCCAGCCGAGCCGGC
AGCAGATGAAAGCCACACCCGAGTGGGAGATAGTCCCTCCATGAAGCCAA
ACAGCGTTGTGATGAAGACAGAATTGTTGGCGGTTTCTTCGAAAACAGAC
CCCACGGAAGCTTTCCCTACTAGGAGAATCAGTCACGGGCGTGGAAGATG
GCTCGTGTGATGAACCAGACGATGCGGTGAGTACTGAAGTGGGGATCTCA
TGCCCACCAGAAAATAGTAGCGGATGGGGGGTGGGTTGAACACGATTTCT
ACTGCTGCAGCTTCGTGAGTCCAACATGCCACGATTGTTTTATTTTTACT
CTCTGTGCGCGTGTTAAGCACAATGGACATACATGCTTGTTTGTGGTGGT
TGTTCCCGGTGCACCGGTAGTTTTCACTGTTCTGCGAGGGCAGGACGATT
GCCTGCTCTCTTGTAGTATGGGGAGCTGGGGAAAGGTCGACGTGAATGCT
TGCAATTTGTACGCTAGGATGCTGTTTCGAACCTTGTTGGTCCCAAATTT
CGTACGGCGAAAGGTTCGGGTGGCCAAGACTGCATGCATTCGCATTCGTT
TCCCGTGATACATCTGTCACGCACCACTCAAGGCTGCTTGGTATGTCTTG
CCTGTGGGCTTGCTGCTGAAACTCTTAGACAGTCCTCGTGGGCGAAACGG
GTGCTTCTGGTTTACAGAGAAAGGACCGTATCTACAACGGTCACCGAGTC
GAAAGTAGTGCATCATGAACCATATTACGGCTTTATCACGTCGCTCCTAT
CGATACTTTACACTCCTGTCATATTTTTGCTTCTTCGGTGCGCTACTCCA
AACAGGTCAGCTGCCTACAGCAGGGCAGGCAAGAGGCAAACAAGAGGCAC
GCGGGAGTAGCACGATTCAACCCGTGTGAGTGACGGCTGCCGCTTCTGCT
GTCAGAGCGGTCTTCGGCTGTCCACTCTTCTGTATCCGGTTATCGTGCCA
GCAGCACTTAATTCTGCAGCTCCTTTTCTACTGATTTTTGTTTCAACCTT
CGTCATCCTTGCACTGATTGGACGATGGCTGAACTACTGCTGTGTGGGGA
GGAGTAGGTGCGTTCTGTTTCTGTTTTTCCTGTTTCGGCGCTGTTTCTTT
TTCGTAAAGTTGTTTTTTGGTATGGTGAACAAATATGGTAAGATTCGTAC
CAGGGATGTGATTAGTTCTTAAATGTATTGGAGTTGATTTTCGGCGTGTG
GAGTCCCGATTTATATGATCATGCTTGTTTCTCGTTCGTCGATGGTATGG
GTGAAACATGCAGACCGAGTAGCAAGGCGTTCACCTCAAATTCTTTTCAA
ATACCAAGTGTTTTTTCACGCCGAACTATTGGAAGCTCTACTCGTAGGCA
CAATGCCTCGTCGTTCGTTGGAGCGTTGGACCGAGAGTCTGTCGTCACTT
TTTTTTGTCCTACTCATAGTATTCCGTATCCTACCACCGTGGAAAGCGAT
CAATTCTTGAGTAAACAAAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig118:460871..463991-

>mRNA_P-littoralis_Contig118.112.1 ID=mRNA_P-littoralis_Contig118.112.1|Name=mRNA_P-littoralis_Contig118.112.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1650bp|location=Sequence derived from alignment at P-littoralis_Contig118:460871..463991- (Pylaiella littoralis U1_48)
ATGTCGAGCAAGCGCACCCGCAGTGGCTGCACCAAGCCGGGATATGGAGT
AGTGGAAGGTACCAAGACAGCGGAGGTCCGCTCTCGACACGCAAAGGACG
GGAAGGTGAACGTGTACGGCAAGAAATGCACGCACCCTGGCTGCACCAAA
AGACCGAGCTATGGCGTGGCAGGTACCAAAACGGCGGAGTTCTGCTCTGG
CCACGCAAGAAAAGGGATGGCGAACGTCAAGAACAAGATGTGCACCCACC
CTGGCTGCACCAAGCAGCCGAGCTATGGCGTGGCAGGTACCAACACGGCG
GTGTTCTGCTTTGGACATGCCAAGGACGGGATGATATCCACCCATAGAAA
GAGGTGCAGCTACCCTGGCTGCACCAAACGCCCGAGCTACGGTGTGGCGG
GAACCACGGCGGAGTTCTGCTCTGGGCACTCCAAGGACGGGATGGTGGAC
GTCTACAACAAGAAGTGCACCCACCCTGGCTGCACCAAAACGCCGAGCTA
TGGCGTGGCAGGTACCAACACGGTGGAGTTCTGCTCTGGCCACGCAAAAG
ACGGAATGGTGAATGTCAAGAACAAGAAGTGCACCCACACTGGCTGCACC
AAGCAGCCGCACTTTGGCGTGGCAGGTACCACCACGGCGGTGTTCTGCTC
TGGCCACGCCAAGGACGGGATGGTGGACGTTTACAACAAGAAATGCGACC
ACCCTGGCTGCACCAAGCGGCGGAGCTTTGGCGCGACGGGTACCAACAGG
GTGGAGTTCTGCTCTGGACACGCAAAGGGCGGCATGGTGGACGTGGCCAA
CAAGAAGAGGTGCAGCCACCCTGGCTGCACCAAAAAACCGAGCTATGGCG
TGGCAGGTACCAAGACGCCGAAGTTCTGCTCTGGTCACGCCAAGGGCAGG
ATGGTGGACATAAAGAACAAGAAATGTTCTCACCTTGGCTGCACCAGGCG
GCCGCACTTTGGCGCGGCAGACACGAAAACAGCAGAGTTTTGCTCTGGAC
ACGCCAAGGACGGGATGGTGGACGTCTACAGCAAGAAGTGCACACACCCT
GGCTGCAGTAAAGCGCCGAGCTATGGCTTGGCAGGTACCAAGACGGCGGA
GTTCTGCTCTGGACATGCCAAGGACGGAATGATGAACGTCAAGACCAAGA
GGTGCAACCACCGTGGTTGCACCACGGGGCAGAGCCATGGCGCGGCCGGC
AGTGTCCGCACGTTTTGCGCCCTATACGCTCAAAAAGGCATGGTGAACCT
CAACACTGCGAGGACCTCAAGTGGTGCACGCGGTAGAAGTGGTAACCCGC
AAACGTTGGATGAAGGTGTTGGACTGGATCGGGGTACCGCCCGCCGTGCT
AGTGCAGGTGAAAAGAGGAAGCGACGCTTGCCTTCACCAACCCAGACGGG
GACATACCCCGGCGGGAACAAAGCGAGCAGCAAGCGCACCCGCCAGGCCC
CCTTCCATACACCTGTGACTCCGACCCCAGCCGAGCCGGCAGCAGATGAA
AGCCACACCCGAGTGGGAGATAGTCCCTCCATGAAGCCAAACAGCGTTGT
GATGAAGACAGAATTGTTGGCGGTTTCTTCGAAAACAGACCCCACGGAAG
CTTTCCCTACTAGGAGAATCAGTCACGGGCGTGGAAGATGGCTCGTGTGA
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