mRNA_P-littoralis_Contig700.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig700.4.1
Unique NamemRNA_P-littoralis_Contig700.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig700.4.1 vs. uniprot
Match: A0A6H5JZP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 8.040e-9
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 3 
Query:  180 FGCSRYKWHQTIVESGFLVDVLSGVPRGEGLALAVAVGEEAGSRGCGGHVSWEHRLEWG 356
            + C  +    T VESGFL D +SGVPRGEGLAL VA GEE G+ G       EH LEWG
Sbjct:   82 YACESFNL-ATWVESGFLFDTVSGVPRGEGLALVVACGEEVGTGGGSVGGLGEHGLEWG 139
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BLAST of mRNA_P-littoralis_Contig700.4.1 vs. uniprot
Match: A0A6H5K9Y3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.730e-8
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 3 
Query:  180 FGCSRYKWHQTIVESGFLVDVLSGVPRGEGLALAVAVGEEAGSRGCGGHVSWEHRLEWG 356
            +GC  +    T VESGFL D +SGV RGEGLAL VA G+E G+ G       EHRLEWG
Sbjct:   87 YGCDSFNL-TTSVESGFLFDTVSGVLRGEGLALVVAGGKEVGTGGDSVGRPGEHRLEWG 144
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BLAST of mRNA_P-littoralis_Contig700.4.1 vs. uniprot
Match: A0A6H5J8A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.260e-7
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 3 
Query:  180 FGCSRYKWHQTIVESGFLVDVLSGVPRGEGLALAVAVGEEAGSRGCGGHVSWEHRLEWG 356
            +GC  +    T VESGFL D +SGV RGEGLAL VA G+E G+ G       EH LEWG
Sbjct:   87 YGCDSFNL-TTSVESGFLFDTVSGVLRGEGLALVVAGGKEVGTGGGSVGGLGEHGLEWG 144
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BLAST of mRNA_P-littoralis_Contig700.4.1 vs. uniprot
Match: A0A6H5J9U7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9U7_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.530e-6
Identity = 31/59 (52.54%), Postives = 36/59 (61.02%), Query Frame = 3 
Query:  180 FGCSRYKWHQTIVESGFLVDVLSGVPRGEGLALAVAVGEEAGSRGCGGHVSWEHRLEWG 356
            + C  +    T VESGFL D +SGV RGEGLAL VA G+E G+ G       EH LEWG
Sbjct:  147 YACDSFNL-TTSVESGFLFDTVSGVLRGEGLALVVAGGKEVGTGGGSVGGLGEHGLEWG 204
[Close]
BLAST of mRNA_P-littoralis_Contig700.4.1 vs. uniprot
Match: A0A6H5K6A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6A1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.790e-6
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 3 
Query:  180 FGCSRYKWHQTIVESGFLVDVLSGVPRGEGLALAVAVGEEAGSRGCGGHVSWEHRLEWG 356
            + C  +    T VESGFL D +SGV RGEGLAL V  G+E G+ G       EH LEWG
Sbjct:   19 YACDSFNL-TTSVESGFLFDTVSGVLRGEGLALVVEGGKEVGTGGGSVGGLGEHGLEWG 76
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig700.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JZP8_9PHAE8.040e-955.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9Y3_9PHAE1.730e-855.93Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8A6_9PHAE1.260e-754.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9U7_9PHAE1.530e-652.54Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6A1_9PHAE1.790e-650.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig700contigP-littoralis_Contig700:4999..5403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size405
Hectar predicted targeting categorysignal peptide
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791467.2325492-UTR-P-littoralis_Contig700:4998..49991680791467.2325492-UTR-P-littoralis_Contig700:4998..4999Pylaiella littoralis U1_48UTRP-littoralis_Contig700 4999..4999 +
1680791467.2663038-UTR-P-littoralis_Contig700:5347..54031680791467.2663038-UTR-P-littoralis_Contig700:5347..5403Pylaiella littoralis U1_48UTRP-littoralis_Contig700 5348..5403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791467.2468078-CDS-P-littoralis_Contig700:4999..53471680791467.2468078-CDS-P-littoralis_Contig700:4999..5347Pylaiella littoralis U1_48CDSP-littoralis_Contig700 5000..5347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig700.4.1prot_P-littoralis_Contig700.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig700 5000..5347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig700.4.1

>prot_P-littoralis_Contig700.4.1 ID=prot_P-littoralis_Contig700.4.1|Name=mRNA_P-littoralis_Contig700.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MAVLSLHLISAYLGLRCLRFIRGTSDTIPFSFDNIVVQISGVTCALTFPC
SFHLLCWLTLRVLEVQVASNDRRERISGRCAVWSAEGGGLGPCGCSWRRS
RIEGLRGPRFVGTSA*
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mRNA from alignment at P-littoralis_Contig700:4999..5403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig700.4.1 ID=mRNA_P-littoralis_Contig700.4.1|Name=mRNA_P-littoralis_Contig700.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig700:4999..5403+ (Pylaiella littoralis U1_48)
AATGGCCGTGCTTAGTCTACATCTCATATCGGCATATCTCGGCCTTCGTT
GTCTTCGCTTCATTCGCGGTACATCTGACACTATACCGTTCTCTTTTGAT
AACATTGTCGTGCAGATATCAGGGGTAACCTGTGCACTTACTTTTCCATG
TTCTTTTCATTTGCTATGTTGGCTGACCCTTCGGGTGCTCGAGGTACAAG
TGGCATCAAACGATCGTAGAGAGCGGATTTCTGGTCGATGTGCTGTCTGG
AGTGCCGAGGGGGGAGGGCTTGGCCCTTGCGGTTGCAGTTGGCGAAGAAG
CAGGATCGAGGGGTTGCGGGGGCCACGTTTCGTGGGAACATCGGCTTGAA
TGGGGGGAGGGCGAGGTTCATTTGATTGTTGACTGACTACGTTTGGGGTT
TGATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig700:4999..5403+

>mRNA_P-littoralis_Contig700.4.1 ID=mRNA_P-littoralis_Contig700.4.1|Name=mRNA_P-littoralis_Contig700.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig700:4999..5403+ (Pylaiella littoralis U1_48)
ATGGCCGTGCTTAGTCTACATCTCATATCGGCATATCTCGGCCTTCGTTG
TCTTCGCTTCATTCGCGGTACATCTGACACTATACCGTTCTCTTTTGATA
ACATTGTCGTGCAGATATCAGGGGTAACCTGTGCACTTACTTTTCCATGT
TCTTTTCATTTGCTATGTTGGCTGACCCTTCGGGTGCTCGAGGTACAAGT
GGCATCAAACGATCGTAGAGAGCGGATTTCTGGTCGATGTGCTGTCTGGA
GTGCCGAGGGGGGAGGGCTTGGCCCTTGCGGTTGCAGTTGGCGAAGAAGC
AGGATCGAGGGGTTGCGGGGGCCACGTTTCGTGGGAACATCGGCTTGA
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