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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2770 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 1578 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789493.1303537-UTR-P-littoralis_Contig118:288148..289206 | 1680789493.1303537-UTR-P-littoralis_Contig118:288148..289206 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig118 288149..289206 - |
| 1680789493.1612153-UTR-P-littoralis_Contig118:290784..290813 | 1680789493.1612153-UTR-P-littoralis_Contig118:290784..290813 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig118 290785..290813 - |
| 1680789493.1726995-UTR-P-littoralis_Contig118:293250..293355 | 1680789493.1726995-UTR-P-littoralis_Contig118:293250..293355 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig118 293251..293355 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789493.1438317-CDS-P-littoralis_Contig118:289206..290784 | 1680789493.1438317-CDS-P-littoralis_Contig118:289206..290784 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig118 289207..290784 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig118.71.1 >prot_P-littoralis_Contig118.71.1 ID=prot_P-littoralis_Contig118.71.1|Name=mRNA_P-littoralis_Contig118.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=526bp
MATNIEMPPCHDLSPVHPAALPPFISSFLSAQHRQDRCARKATTTAAVHT
ADSTEQNVADLFRQSAKDNVTKIGAARSKSTATAKASTDGSALLRRQLAG
AQRHDGVRKATFRARAVDHDHDHALKANLRPRSPLNQEGRRSLRSINPPA
SPPSPTATTLSSDHDSTFTDIPSSHSRSDVKARTPFLRGIKVPRSHSEVA
RGVPSDSTFTADDDFYADTSLRRMALIPLQGIHLRYSLDIQQKAAALIDI
FPPDLERESSSLCAVMRHIMLHTVQGTDIIITDAAKLLAAETSGLVGALR
RAWLNRQFTNLPAWRTIEGYRRSLAGATAAAGTSSPRTRGTNRCPSGNAK
RSASTERLFSETGTALSPHDRNGNKRGTDHVSKRRARRTDGSSTDTRTVR
FSFDNLCRHEGDHHSDSSSSEARSTASRHTEHMGAPSGGKENDRDVDRSS
PPHRSPPRETPSQLISQELACARPPSSCATRASRNRNRGGRRNSGSDKGD
RRISRNVFRLFYHPILYSLNTPASS* back to topmRNA from alignment at P-littoralis_Contig118:288149..293355- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig118.71.1 ID=mRNA_P-littoralis_Contig118.71.1|Name=mRNA_P-littoralis_Contig118.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5207bp|location=Sequence derived from alignment at P-littoralis_Contig118:288149..293355- (Pylaiella littoralis U1_48)
GCTGCACGCACGCACGGCAGTGGTCGAACGAGCTCCATACTGCGCAAAAC
GATAGCATTGGGCCTGTGACTCCAGTGCTGTCGACACGATTTCGACACCC
ACCCCGTGAGCTGTGTTTTTTTCTGTGGGTGCTCTTGTCTCCCCCTTGAC
TACTTGCCGACGTTGCATGAGACTCCATTTGACTATTGGACGACGCTTTA
GATACGAAGTGAATGACAGCAATCCTTCCCTCGACTACTGTACTTGCCCC
CCCCGCCTCCCACGCTGTTTTGACTCCGCTGTCTCTATAGCCCTTAGCTC
AGCTATGGTACGCATTTAGTGCTGCAGCATCTCTGGCCAAGCATCTGCCT
ATGCAGCCTCAAAGTGCTTCGCTTCTCCGCGAAGCCTCGCTCACTTTGTA
ACATGCACCACACCTTTTACACGTCATGTGTATGATAGCCTGACTGCTCC
GACTGCTGTACACTGCTGTTTGTTCGACATGTGATACGTATACGGAAGAA
GTTGTATATGCATACAAAGCGTTGTTCGGTTGTGCTATTCATTGGCGACG
ATGGTAGTGACCGTTGTGCTACTGAAACCGCAGCTGTGCCTCTGACGAGA
GTATCACTACAACCAGAGCAACTTCTGAGGATATAGAAGAGAGTACCGCG
TGGATTTGCGTGGTTTGGTGTCCAGTACTTCTTTGTGAGACCGACCGCAT
GAACTTCGGATGTACTCGAGTTGTGTCATGTTCGTACTTCGTGCCCTTGC
TGCTGTCCGTATGATAACCCTACAGAGTAACGCACCCAAGGCGGCCTATC
ATGATTGGCCCTTGCATTGCTTCAGGACCTTCACGTTTACTCATAGCCAT
GGCTACAGGCTGCTCTTTCCCCGGCTGGGAGCCGTTTACAAACGCGAATG
ACGCTTGCGTCATAAGAGGCTCTGAACCGTTGAAACAAAAGGGCGTGTTG
TTTTTGGGCATGACCAACGAAACTCTGTCTCAAAGTTTCTCTGCTCTCTC
CTTGGCTGCGCAGCTATCTACAAACAGGATCGATGCCTTCATCACAGAGG
CTCCAGACTCACCGGAGGGGCGCCAGTTTTTTGGGGAGGGACCATCAAAA
GTTGGACTCTCAGAGATCCTCCACTATTCTCTGCGGTGGCACGTCACAGC
TACTGCCCAAACTCTGCCGGGGTGACTCGTGGAGGCCCGTATGTACGCTC
AAAGCTCAACGCCAGATGCTGAACTCCTCACATGCCAGCCATCACGGCTG
AGCTTGAACCCGTGCAAGAACCGAAGATTGGACGTGCATTCTCGTCTGTG
CTTCCAAGACAGCAACTGCAGACACTTGTGCTCGCATCACTACTGCTGCC
GCAGCAGCTAAACCCAAACTTCGTCTGGGACTCAGCGTGGCGCACTCAGC
CATACGCTAACCCCCTGCGCAGACAGTACCAGCCATCACGGCTGAGCAAA
GAGGCAAACAAAACCAGGAGGCTTCGCCTGCGTTGTACCATGGTGCTCTG
AAATAGCAACAGCAGGTGTGAAGGACACCAGCGCCCGAACCCCGAGTTGC
GCTTGAGTCCTGCTGATCAGCAGTGATCAAGCACAAAGACACTATGCTGT
CGACGAGGCAACCTTTTAGGGGGGAGACCCCGTTATCGCTCTACAGCATG
ACATTTTTTTATTGGCGTGATGAGAGTTGATCCGCCGACCGTTGGTCAAT
GGGCCCATCCTTCATCTCCGTGGCCACATTGGTGATGCTCAACCTCGAGC
GAACAACGATGACTGAATCCTCACGATGAGGCTGTTGACCAACAAGAGGT
GCCTCGTCCAGAACTCGGCTCACGGCGAACTTTACAGGCTAACTTCCAAC
CCGGCGCTTTGATGGCAAATTTCGAACTCTCAAGTTGGTCTTTGTGAACA
CTAGTGAACAAGTCTTCCAAATTTGTCTGCAACACAGGCCAAGCCACAGG
CAACGTCAGGCGAACGGCAACCACGGCTCACTGCGCAACGTCATACTTCG
AAGTAACAAATAGCAGCAGGAATTCCGCACGTACTTTATATCTTGGCTAT
ATTTTATTTCCTCGTCAAGGTCGTCTCTCTTCGCATGGAGCTTTGAGGCG
ATCGACTCCGCAGACGACGTGGAAGAGACCACAATTCCATCATCCTTCCA
CCTTGTCGAACGTCCTCTTCAGTGAGCACTCTCCCGCTCGGGCACGTGCA
CAACCCTTCACATCTGGCTAAACAATAACAGCGAGCGGCGGAAACTGTTT
TTCCGCGACGTACTGATTTGCATCCCATGCTTCAGTAGCTGCGGCCATCG
CGACTAGGGCGGTATCCCCACCGCTTCAAATCCTGCTTTTTCCCGATACC
TCCTCTGATGGGGCTCTGGACATGGCCGTAATGTTTACCTACTTCATCAA
GGCCCGCCTTACCGTCTACGCTGCCTAACCATCGCCGTCGTACACTATGA
TGCAATCAGTCTCGTGACTATTTTCTTTAGCATCCTTTTACCTGTTTTCC
CCGTAAAACTTTCCCGCCGGCCCATTTTTCCACCCGAACTAGGTGTTTCC
TCTTCTTCTTGGCACTTTCACATGGCTACCAACATCGAAATGCCTCCCTG
CCACGACCTCTCCCCGGTTCATCCGGCTGCGTTGCCTCCATTTATCTCGA
GTTTTTTATCAGCGCAACACCGTCAGGATCGCTGTGCCAGGAAGGCAACC
ACGACCGCCGCAGTTCACACTGCTGATTCCACGGAGCAAAATGTTGCCGA
TCTTTTTCGACAGAGTGCGAAAGACAACGTCACCAAGATCGGCGCTGCTC
GTTCCAAATCGACAGCAACCGCGAAAGCTTCAACTGATGGCTCTGCCCTC
CTGCGGCGCCAACTGGCAGGTGCCCAACGTCACGACGGAGTCAGGAAAGC
GACCTTCCGCGCACGCGCCGTAGACCACGACCACGACCACGCTCTCAAAG
CGAACCTCCGACCCCGGTCCCCACTCAATCAAGAAGGTCGCCGATCGCTA
CGAAGCATCAATCCACCGGCCTCGCCGCCATCCCCTACGGCCACCACCCT
CAGCAGCGATCACGACTCAACCTTCACCGACATCCCGTCGTCACATTCAC
GCAGCGACGTGAAGGCCAGGACACCTTTCCTTCGGGGAATCAAAGTGCCT
CGCTCACACAGCGAGGTGGCCCGCGGTGTTCCATCAGACTCCACGTTCAC
GGCAGATGACGATTTTTACGCTGACACGAGCCTGCGTCGGATGGCCCTGA
TACCTCTCCAAGGCATCCATCTACGATATTCCTTGGACATACAACAGAAG
GCGGCCGCACTGATCGACATTTTCCCTCCGGACTTGGAACGGGAATCATC
GTCTCTTTGCGCTGTCATGCGGCACATCATGCTCCATACCGTGCAGGGTA
CAGACATCATCATCACAGATGCCGCCAAGCTCCTCGCTGCCGAGACGTCT
GGCCTCGTTGGTGCACTTCGCCGTGCTTGGCTCAACCGCCAGTTCACCAA
CCTCCCTGCATGGCGAACCATTGAGGGCTACCGCCGATCACTAGCCGGAG
CAACAGCGGCGGCTGGGACATCTTCCCCTAGGACCAGAGGCACCAACAGG
TGTCCGTCCGGCAATGCAAAGCGCAGCGCCTCAACAGAAAGACTCTTCTC
CGAAACCGGAACAGCGTTATCCCCTCACGACCGCAACGGCAACAAACGTG
GCACCGACCACGTGAGCAAGCGCCGGGCAAGGCGCACCGACGGTTCTTCT
ACCGACACGCGGACCGTCCGTTTTAGCTTCGACAACCTATGCCGTCATGA
AGGAGACCACCACAGCGACAGCTCTTCCTCCGAGGCGCGATCTACGGCCA
GTCGACACACGGAGCACATGGGCGCACCATCTGGCGGGAAGGAAAATGAC
CGCGATGTCGACCGCAGCTCTCCACCCCATCGTTCCCCTCCTCGTGAGAC
ACCGTCGCAGCTTATTTCGCAAGAGCTTGCATGTGCACGACCGCCGTCTT
CTTGTGCGACACGCGCTTCACGCAATCGCAACAGGGGGGGTCGCCGAAAC
AGTGGTTCTGACAAAGGTGACCGTAGAATTTCTCGAAATGTTTTCCGTCT
GTTTTATCACCCTATCCTTTATTCTCTTAATACACCCGCATCTTCGTAGT
CCTGTCTTTTCTGAGAGGGGACGGAATATTTTGTTGAAGAGAGGAGCACT
AGACAAAAGTACCGGCAGGATGTTTGGCCCAATTGTTGGAATGTGAAGTT
GATTGGAGAGCGGTAGCTCCGTCAGAAATAGGGAGCATGTCGTGGCATAA
TTGGCGTGCATTGTTCGGGAGAACGTCGATGCTGAATTGCCTGTATTTTA
TTTGGAATTCATGGTGCATGGAGCACGACTATGCCGCGTGTAAATTTTCT
CATATAAGGAGGAGCGATAAATATTTTTGGCAATTTGAGTTTCCGTGCTG
GAAAAGGGAGCGGGATTAGTTTGCATTTTGATTCTTTGTTTTGAAATTTG
CTGGAACTATCGCGCTGACAGCAGGGTCTTGTGGTTTTCGCGTGGGTTAT
TTTGGAGTTGATGAACGTATATTCGTTAAGCGGGAATATTCTTCCCGAGA
CTTTGTCTCCAGTACCAGTATTCTTGGCTTGCTACAATATCTGAGGCGAA
ATTGTTGAACTGAGGCAATAAAGGCGGCTTGATTTGTCGGCAAAGTGTCC
TTTCAAACGAATATTTGAGGAAACGGGGGCGAAGCGACAAACGATGCGTA
AAACCGATGGGAACTAAGTGAAATTTCTTGGGATCCAGGCGAACATGGAG
TAAGCTTTCTCGGAATTCATGTGAGCAGGGAGTTGACTTGTGGATAACGT
CATTTTTGGGTGTTGAAGTTGCTCTCTGGTTGGGTTTTTAGCACAAACGT
TTTGGGCTATGTACAAGTACATGTAACGTGAAATTTTTGTTGGAAAAGCG
CCAGACGGGAGTCCACGGTGTTACGGCTGAGTATGATAGATTCTTGTGGG
TGTTGAATCGGTAAGGAAACTTCGAAACACATGCAAGTACTTCGGATTAC
ACACGAATGTGTGGTATCAATACTGCCGTAAATATGCGACGGTGTAGGTG
ATCTGCTTGGAGGTGGACGGGGGAGGAAAACGTACGTCGCAGTATGGAGT
TTATGCCCCGGGCCTAATTACTCAGTGAACGAGGGACCTGAGATACCTGA
ACCATTT back to topCoding sequence (CDS) from alignment at P-littoralis_Contig118:288149..293355- >mRNA_P-littoralis_Contig118.71.1 ID=mRNA_P-littoralis_Contig118.71.1|Name=mRNA_P-littoralis_Contig118.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1578bp|location=Sequence derived from alignment at P-littoralis_Contig118:288149..293355- (Pylaiella littoralis U1_48)
ATGGCTACCAACATCGAAATGCCTCCCTGCCACGACCTCTCCCCGGTTCA
TCCGGCTGCGTTGCCTCCATTTATCTCGAGTTTTTTATCAGCGCAACACC
GTCAGGATCGCTGTGCCAGGAAGGCAACCACGACCGCCGCAGTTCACACT
GCTGATTCCACGGAGCAAAATGTTGCCGATCTTTTTCGACAGAGTGCGAA
AGACAACGTCACCAAGATCGGCGCTGCTCGTTCCAAATCGACAGCAACCG
CGAAAGCTTCAACTGATGGCTCTGCCCTCCTGCGGCGCCAACTGGCAGGT
GCCCAACGTCACGACGGAGTCAGGAAAGCGACCTTCCGCGCACGCGCCGT
AGACCACGACCACGACCACGCTCTCAAAGCGAACCTCCGACCCCGGTCCC
CACTCAATCAAGAAGGTCGCCGATCGCTACGAAGCATCAATCCACCGGCC
TCGCCGCCATCCCCTACGGCCACCACCCTCAGCAGCGATCACGACTCAAC
CTTCACCGACATCCCGTCGTCACATTCACGCAGCGACGTGAAGGCCAGGA
CACCTTTCCTTCGGGGAATCAAAGTGCCTCGCTCACACAGCGAGGTGGCC
CGCGGTGTTCCATCAGACTCCACGTTCACGGCAGATGACGATTTTTACGC
TGACACGAGCCTGCGTCGGATGGCCCTGATACCTCTCCAAGGCATCCATC
TACGATATTCCTTGGACATACAACAGAAGGCGGCCGCACTGATCGACATT
TTCCCTCCGGACTTGGAACGGGAATCATCGTCTCTTTGCGCTGTCATGCG
GCACATCATGCTCCATACCGTGCAGGGTACAGACATCATCATCACAGATG
CCGCCAAGCTCCTCGCTGCCGAGACGTCTGGCCTCGTTGGTGCACTTCGC
CGTGCTTGGCTCAACCGCCAGTTCACCAACCTCCCTGCATGGCGAACCAT
TGAGGGCTACCGCCGATCACTAGCCGGAGCAACAGCGGCGGCTGGGACAT
CTTCCCCTAGGACCAGAGGCACCAACAGGTGTCCGTCCGGCAATGCAAAG
CGCAGCGCCTCAACAGAAAGACTCTTCTCCGAAACCGGAACAGCGTTATC
CCCTCACGACCGCAACGGCAACAAACGTGGCACCGACCACGTGAGCAAGC
GCCGGGCAAGGCGCACCGACGGTTCTTCTACCGACACGCGGACCGTCCGT
TTTAGCTTCGACAACCTATGCCGTCATGAAGGAGACCACCACAGCGACAG
CTCTTCCTCCGAGGCGCGATCTACGGCCAGTCGACACACGGAGCACATGG
GCGCACCATCTGGCGGGAAGGAAAATGACCGCGATGTCGACCGCAGCTCT
CCACCCCATCGTTCCCCTCCTCGTGAGACACCGTCGCAGCTTATTTCGCA
AGAGCTTGCATGTGCACGACCGCCGTCTTCTTGTGCGACACGCGCTTCAC
GCAATCGCAACAGGGGGGGTCGCCGAAACAGTGGTTCTGACAAAGGTGAC
CGTAGAATTTCTCGAAATGTTTTCCGTCTGTTTTATCACCCTATCCTTTA
TTCTCTTAATACACCCGCATCTTCGTAG back to top
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