mRNA_P-littoralis_Contig70.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig70.62.1
Unique NamemRNA_P-littoralis_Contig70.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig70.62.1 vs. uniprot
Match: D7FUE3_ECTSI (UPF0250 protein NE1487 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUE3_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 3.260e-77
Identity = 128/184 (69.57%), Postives = 137/184 (74.46%), Query Frame = 1 
Query:  142 VLAHLAMRSLGFSPSVFRGGGAASAAAASFRHALRRSHGGHTTRXXXXXXXXXXXXXXXXXXCRTGETVGKMVLRPDWEREGRVHGLRLPPERTAERAFEYLVDYPCEFQIKVIGVNEGSFADDIAATVSAVCEVEASDVRFTVRDTSSGRYQSITVHAPVKNASMLYKCYELIDEDPRVKFKF 693
            ++  LA RS GFSP+   G     AA  S R A  RSHG HT                     R   T  KMVLRPDWEREGRV+GLR+P ERTAERAFEYLVDYPCEF+IKVIG+NEGSFADDIAATVSAVCEVE SDVRFTVRDT+SGRYQSITVHAPVKNA+MLYKCYELIDEDPRVKFKF
Sbjct:    1 MVLRLATRSFGFSPASSGG----IAAQVSSRRAAARSHGRHTRPTAAAFTSGPSAAAARPTGSRPPTTARKMVLRPDWEREGRVYGLRMPRERTAERAFEYLVDYPCEFEIKVIGINEGSFADDIAATVSAVCEVETSDVRFTVRDTTSGRYQSITVHAPVKNATMLYKCYELIDEDPRVKFKF 180
[Close]
BLAST of mRNA_P-littoralis_Contig70.62.1 vs. uniprot
Match: A0A836CJU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU5_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.690e-38
Identity = 67/113 (59.29%), Postives = 85/113 (75.22%), Query Frame = 1 
Query:  355 MVLRPDWEREGRVHGLRLPPERTAERAFEYLVDYPCEFQIKVIGVNEGSFADDIAATVSAVCEVEASDVRFTVRDTSSGRYQSITVHAPVKNASMLYKCYELIDEDPRVKFKF 693
            M+LR D +REGR  G          RAFEYLVDYPC+FQIK +G N+G+ ADD+AA V +VCEVE + V +TVRDT SG+Y+S+T+ APV N+ MLYKCYE+I +D RV+FKF
Sbjct:   45 MILRTDADREGRKMG--------NPRAFEYLVDYPCKFQIKAVGHNKGNLADDLAALVGSVCEVEPAAVEYTVRDTDSGKYRSVTLMAPVSNSDMLYKCYEVIGQDERVRFKF 149
[Close]
BLAST of mRNA_P-littoralis_Contig70.62.1 vs. uniprot
Match: A0A836C812_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C812_9STRA)

HSP 1 Score: 127 bits (320), Expect = 9.500e-34
Identity = 65/119 (54.62%), Postives = 79/119 (66.39%), Query Frame = 1 
Query:  337 GETVGKMVLRPDWEREGRVHGLRLPPERTAERAFEYLVDYPCEFQIKVIGVNEGSFADDIAATVSAVCEVEASDVRFTVRDTSSGRYQSITVHAPVKNASMLYKCYELIDEDPRVKFKF 693
            G     M LR D +REGR  G          R FEYLV+YPCEFQIKV+G N+ S ADD+AA V+A CEVE   V +T R+T SG+Y S+T+ APV + +MLY+CY  I ED RVKFKF
Sbjct:   40 GAAARGMALRSDDDREGRKLG--------NPRVFEYLVEYPCEFQIKVVGFNDASLADDLAAIVAATCEVEVGAVTYTTRETESGKYSSVTLTAPVASPAMLYECYAKIGEDARVKFKF 150
[Close]
BLAST of mRNA_P-littoralis_Contig70.62.1 vs. uniprot
Match: A0A6U5NVB4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5NVB4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.770e-25
Identity = 50/95 (52.63%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:  415 ERTAE--RAFEYLVDYPCEFQIKVIGVNEGSFADDIAATVSAVCEVEASDVRFTVRDTSSGRYQSITVHAPVKNASMLYKCYELIDEDPRVKFKF 693
            E T E  R F+ LV+YPC+F +K++G NEG+FA ++ + V+ VCE E  DV +T R  + G++ S+TV APV+NA MLY  YE +D+DPRVKFKF
Sbjct:   53 EETGEKSRVFDALVEYPCKFTMKIVGANEGNFAQEMVSLVADVCEKEMEDVAYTTR--AMGKWTSVTVKAPVENAEMLYAIYEAVDKDPRVKFKF 145
[Close]
BLAST of mRNA_P-littoralis_Contig70.62.1 vs. uniprot
Match: B5Y5R9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y5R9_PHATC)

HSP 1 Score: 105 bits (262), Expect = 4.730e-24
Identity = 52/114 (45.61%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:  358 VLRPDWEREGRVHGLRLPPERTAE--RAFEYLVDYPCEFQIKVIGVNEGSFADDIAATVSAVCEVEASDVRFTVRDTSSGRYQSITVHAPVKNASMLYKCYELIDEDPRVKFKF 693
            + +P+++ +G         ERT E  R FE LVDYPC+F +K++G NEG+F +++ A V+  C V+A  ++ +VR  + G++ S+TV APV++A MLY  YE+ID DPRVKFKF
Sbjct:  137 ITKPEYDDQGYT---LYADERTGEKSRVFEALVDYPCDFTMKIVGANEGAFVEEMVAVVAESCLVQADSIQHSVR--ALGKWTSVTVQAPVQSAEMLYGLYEVIDRDPRVKFKF 245
[Close]
BLAST of mRNA_P-littoralis_Contig70.62.1 vs. uniprot
Match: A0A7S1Z075_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z075_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.270e-24
Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 1 
Query:  358 VLRPDWEREG-RVHGLRLPPERTAERAFEYLVDYPCEFQIKVIGVNEGSFADDIAATVSAVCEVEASDVRFTVRDTSSGRYQSITVHAPVKNASMLYKCYELIDEDPRVKFKF 693
            V  P+++ +G  +H   +  E+  +R FE LVDYPC+F +K++G NEG+F  +I   V+  CEV   DV ++ RD  +G++ S+TVHAPVK+A MLY  YE +D DPRVKFKF
Sbjct:  142 VNNPEYDDQGYTLHTNEVTGEK--KRVFEALVDYPCDFTMKIVGRNEGAFVLEIVQVVADSCEVGIEDVPYSKRD--NGKWTSVTVHAPVKDAEMLYTLYENVDRDPRVKFKF 250
[Close]
BLAST of mRNA_P-littoralis_Contig70.62.1 vs. uniprot
Match: A0A7S2SR06_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR06_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.340e-23
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:  436 FEYLVDYPCEFQIKVIGVNEGSFADDIAATVSAVCEVEASDVRFTVRDTSSGRYQSITVHAPVKNASMLYKCYELIDEDPRVKFKF 693
            FE ++DYPCEF+IKVIG  EG FA D+ A +S V  V A D+ F+ R+T + ++ S+++ A V+ + MLY+CYE +D+DPRVKFKF
Sbjct:   85 FERMLDYPCEFEIKVIGRLEGEFARDMVAIISTVTGVPAMDIAFSTRETPNNKFTSVSIKATVQTSDMLYQCYEELDKDPRVKFKF 170
[Close]
BLAST of mRNA_P-littoralis_Contig70.62.1 vs. uniprot
Match: A0A1Z5K932_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K932_FISSO)

HSP 1 Score: 101 bits (251), Expect = 2.320e-22
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:  430 RAFEYLVDYPCEFQIKVIGVNEGSFADDIAATVSAVCEVEASDVRFTVRDTSSGRYQSITVHAPVKNASMLYKCYELIDEDPRVKFKF 693
            R FE LV+YPCEF +K++G NEG F +++ A V+  CEV   DV  +VR    G++ S+TV APV++A+MLY  YE +D DPRV+FKF
Sbjct:  169 RVFEALVEYPCEFTLKIVGANEGLFVEEMVAVVAEACEVTVQDVSHSVR--MVGKWTSVTVKAPVQSAAMLYALYETVDRDPRVRFKF 254
[Close]
BLAST of mRNA_P-littoralis_Contig70.62.1 vs. uniprot
Match: A0A7S2GUM6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUM6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.670e-22
Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:  382 EGRVHGLRLPPERTAE---RAFEYLVDYPCEFQIKVIGVNEGSFADDIAATVSAVCEVEASDVRFTVRDTSSGRYQSITVHAPVKNASMLYKCYELIDEDPRVKFKF 693
            + R+  + +  E+T E   R FE LVDYPCEFQ+KVIG  EG F  D+   +S V  VEA  ++FT RDT   +Y S+++ APV NA MLY+CY  + ED RVK  F
Sbjct:   43 KNRMSDVTMFSEKTGETESRVFERLVDYPCEFQLKVIGRKEGEFEADMIKIISQVTGVEAEVIKFTSRDTP--KYLSVSIQAPVANAEMLYECYGALGEDSRVKAAF 147
[Close]
BLAST of mRNA_P-littoralis_Contig70.62.1 vs. uniprot
Match: A0A7S1BKS9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKS9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 9.710e-22
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:  415 ERTAERA--FEYLVDYPCEFQIKVIGVNEGSFADDIAATVSAVCEVEASDVRFTVRDTSSGRYQSITVHAPVKNASMLYKCYELIDEDPRVKFKF 693
            E+T E+A  FE LV+YPC F IK++G  EG F  D+   V+  C V  +DV ++ R+   G++ SITV APV+NA MLYK YE+I  DPRVKFKF
Sbjct:  203 EQTGEKARVFESLVEYPCTFPIKIVGAKEGQFVTDMVDLVAETCNVGRTDVTYSERE--KGKWTSITVQAPVENAQMLYKVYEVIGRDPRVKFKF 295
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig70.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUE3_ECTSI3.260e-7769.57UPF0250 protein NE1487 n=2 Tax=Ectocarpus TaxID=28... [more]
A0A836CJU5_9STRA5.690e-3859.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C812_9STRA9.500e-3454.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U5NVB4_9STRA2.770e-2552.63Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B5Y5R9_PHATC4.730e-2445.61Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1Z075_9STRA5.270e-2447.79Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2SR06_9STRA2.340e-2352.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5K932_FISSO2.320e-2252.27Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2GUM6_9STRA7.670e-2248.60Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1BKS9_9STRA9.710e-2252.63Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig70contigP-littoralis_Contig70:310773..318599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FUE3
PFAMsDUF493
Model size695
Max annot lvl2759|Eukaryota
KEGG koko:K09158
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.34e-78
EggNOG OGs2E2JJ@1|root,2S9SY@2759|Eukaryota
Ec32 ortholog descriptionUncharacterised protein family UPF0250
Ec32 orthologEc-03_000560.1
DescriptionProtein of unknown function (DUF493)
Cds size693
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791463.9226356-CDS-P-littoralis_Contig70:310772..3107961680791463.9226356-CDS-P-littoralis_Contig70:310772..310796Pylaiella littoralis U1_48CDSP-littoralis_Contig70 310773..310796 -
1680791463.9385288-CDS-P-littoralis_Contig70:316621..3167471680791463.9385288-CDS-P-littoralis_Contig70:316621..316747Pylaiella littoralis U1_48CDSP-littoralis_Contig70 316622..316747 -
1680791463.9523451-CDS-P-littoralis_Contig70:318056..3185991680791463.9523451-CDS-P-littoralis_Contig70:318056..318599Pylaiella littoralis U1_48CDSP-littoralis_Contig70 318057..318599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig70.62.1prot_P-littoralis_Contig70.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig70 310773..318599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig70.62.1

>prot_P-littoralis_Contig70.62.1 ID=prot_P-littoralis_Contig70.62.1|Name=mRNA_P-littoralis_Contig70.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=231bp
QGLAFAYPSLPATGSQYSSRETQQPVFEGLLYFWLVEEMRAPLAATLVLA
HLAMRSLGFSPSVFRGGGAASAAAASFRHALRRSHGGHTTRGAFPTRAAT
PQVVTTPKTCRTGETVGKMVLRPDWEREGRVHGLRLPPERTAERAFEYLV
DYPCEFQIKVIGVNEGSFADDIAATVSAVCEVEASDVRFTVRDTSSGRYQ
SITVHAPVKNASMLYKCYELIDEDPRVKFKF
back to top

mRNA from alignment at P-littoralis_Contig70:310773..318599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig70.62.1 ID=mRNA_P-littoralis_Contig70.62.1|Name=mRNA_P-littoralis_Contig70.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7827bp|location=Sequence derived from alignment at P-littoralis_Contig70:310773..318599- (Pylaiella littoralis U1_48)
CAGGGACTTGCCTTTGCTTACCCCTCCCTCCCCGCCACCGGTTCTCAATA
TTCCTCTAGGGAGACACAGCAGCCAGTCTTTGAAGGGCTTCTTTATTTCT
GGTTGGTGGAGGAGATGCGTGCCCCTCTGGCAGCCACTTTAGTGTTAGCG
CACCTGGCAATGCGGAGCCTCGGCTTCTCTCCCTCCGTCTTTCGCGGTGG
GGGAGCGGCAAGCGCAGCAGCAGCATCATTCCGGCACGCTCTGCGGCGAT
CTCACGGTGGACACACCACCCGAGGGGCATTCCCCACGAGGGCAGCAACA
CCACAGGTCGTCACGACGCCCAAAACGTGCCGCACTGGCGAGACTGTCGG
TAAGATGGTCCTGCGCCCTGACTGGGAGAGAGAGGGCAGGGTGCACGGAT
TGCGCCTGCCTCCGGAGAGGACGGCCGAGAGAGCCTTCGAGTACCTCGTG
GACTACCCGTGCGAGTTCCAGATCAAGGTCATAGGGGTCAACGAGGGGAG
CTTCGCGGATGACATCGCCGCCACCGTCTCGGCTGTTTGCGAGGTGGGTT
AGGTTGAAGTGGAGAGACGAAGAACGTCGTGCGTCATGCACATACGGGAT
ACATACATCCAATAGCACCAATAACACGCAACAAATCACAACATATTCGT
CACCATCACAACAGCAAGACAGCGCCTAAAGCTCATGATGTATTTTTTAT
GTTTACACGGCGATGCTGACTTCTGAGTCAGGGGTTTAGCATGCTGGGGT
AGCTGCCAATCGTTTTCGTGTCTCCTTGAACAGAGTAAAATGTCATGAGG
TACGGCAGTACCACCTCACATTCTTTTTGTTCTTGTCTGATGCACACATC
TGAATTAATTAGAGCTGCCTAGCGTATTGCACGGATCTGTCATACAACGC
TATTTGAAGTATGTACAAGTAGAATACGGAAGGTTGAGACAGGGCCCACG
ATATATGGGGTGTAGATAGCAGTCAACACACACTCGGTTCAGCGTTCAAC
GGTCAGGTTCAGCACTCAGCACCCAAAAAAGGGGAAAAAGGGGGTTTCCA
AAGGGACGGACTTTCGCGAAACAAAACGAAACATCTTAAGTAAACTTACA
GCAGTTGAACCAGGGATTTACATTGCAAAGCAGCACACAGCGTAACTTGA
TTCCGGGGGGGCAAAATTTCAAAGCGTTCAGAGACATTGTTGTACGTGTG
AGCATCTGTTTGTAATGACTCGAAGGTCCTCACATGACTCGAAGGTCTCA
CTGGCGATGAACATATCGCTCTTTCCGAGCGAGTATCGTGCGTGTGTCGC
GCCCTTCCAAGCTCCTATCTGCTCCTTGTCCGGGGAGATACCACTGTACA
CGCCAGGCGGCATTACCCCCGATTCTATAGTATGACACCACCAAAATCAA
AAGCGATGGCGCCCTGTCGCACGCAAGCATGGCGTGCAGGGGGGTGCTTG
TGTGTCTCTCTAGCATTTGAGTGTCTCGACGGCTCTATGTAGCTGTTGCC
GCTCCACCGGCGCGAATAGCGTGGCCACAAAGATTGAGCTGCCCTGCTGC
CATGCCTGGCTATACCTAAGACTCGTGGTGGTTTGCTGCGGTTCGTGTCG
TACTGCCGCTGTCCCGCTGCAGTCGCTGTGTGTGTTGCGCGCAGTCTCCA
AAAATCCTACTGCCACTGTCTTGTGTTGCGTCCCAAAAAAAGCCACACGC
ATTCCCGAAAAGAAGTGACGCGTTTTCCCTAAAGGTTCATGATAATTCTT
CATTTCAATCGACACACCTTTCCCGTATTCTGTCAGGGACCCATCCCCCC
CCTCCCTCCCCGCGCCCTTTTCCCTCACCGTGGGAAACCTCTCTTGCCAC
AGGTGGAAGCCTCTGATGTCAGGTTCACGGTTCGAGATACCAGCAGCGGG
CGCTATCAGAGCATCACAGTGCACGCCCCTGTCAAGAACGCCTCCATGCT
GTACAAGTGCTACGAGCTCATCGACGAGGTCAGCTGAGTGAAGCTCACCA
TACCATGCCCACGACGTGATGTTTTCTGTTTTTTTGTTTTGTATTGCTAG
CATTCGTAGCAGTTGTCGTTGGTGTTGTCTTCGTTTTGTAAACCGTCCTT
ACGTTAATCCAGCACCTGCGTACTATATTCCGCACGGCTGTAACTGGCCG
TACACGACCGAATTCCGTGGTAACAGCCTGTTGAACAAACACAATCGCAG
GAACAACGATTGTCAGGGACGTACCGTGCGTTGTTTTACGGAGGATACAG
AATGAGTCGTGGTACTCATTCGCGATTGGTTGCTTCATTCGATAGCGAAA
ATGCTCCACAGCTTTTTCAGGTACATGAAATGAATGTACACAGCAGCAGT
TTATTTTTGTCCCTCGTCTTACTTCGCACCGCCTCTGGTAATTTAGAGTG
GTCGTGAAAGCATCGCTACGGTTGGTTCGTGGTGAGTGCCCTCCTCATGT
TGCCTACGATGTGGACTCATGTTTGCCCAGAAAAGCTCAAACGCGGTGCA
AAAAGCGCGAAGCTGAGGGTGGTCGTGAGACTTGGTGAAAAATTGGTACA
TCGAAGTACCACCCGTGGTTGGAGAATCGATTACCAGGTACACGTGAGAA
CATTCGTGAAGTGGTCGATGGTGATCGGAAGGCAAAGAAAACGAGGCAAT
GATACTCATACGAAGAAAAAATGAAAGATAGCGACGAAAGTAGCAAAACA
GCAGTAGTGGCTTCCTTTCCGTTGCGCGGGCCACCGCGCGTTGCTCTTTC
GGTGGGCCCTTTCGCCGTTATCGTAAAAGGGTCCCACATCCAAGCGAAAA
TCAAACGCGAGAGAGGTACACCATGTCCCCCATGATGATTGGCAACAAGC
TGACTGGATCTAAACCCCGGGATATTAGGACTCCGAACGATGAACGAGCA
CGCCAAGTGACCGAAGGCCTCAAGGAGCGGGTGCGTTGCTCGGCGTCATG
GCGCAGGTGTGACACGCTTCGATCATGTCCCACCTGCGCCATAACGCGGA
ACATCGTGCGCGCTCCCTGAGGTCGTTGGCCACTTGGCGTGCGTGTTCAA
TGATCGGAGTCTTGGCATCCCGGGGTTTTGACCAGTGAGCTTGTTCCCAG
TCTTGTTGAGCGACGTGGTGTGCCTCCCTCGCTTTTGGTACCTTGGCGAC
CTCGAATCCTCCGTTGATAACAGCGAGGCCGAAGGACGAAAGGGTGAGGC
ACGGTGTCATGACGAAGCATGGGCAACACGCCTCCAAAAAAAACGCGAGA
CAACTCTCCGGTCCCCCACCCCGAGAATCCAAGACTCGAATGGTGAACAA
GCACTCCAAGTCACCGAGTGCTCCAGGGTGTGCGCACGGCATCCGGCGTG
ATGGCGCAGATGGGACATGCCTTGACGGTACCCCACCTACGCCTTCACAC
CGAACATCGTACGCGCTCTCTTGGACCTTTGGCCAATTGACGTGCTTTTT
CGCCGTTTGGGGTCTTGATATCCCGGGGTGTGGGACGATGGCGTCCTTCT
GGCGGAGCGTACACGATATTCTCCCCGCCTCTGATGTTTTCCCCGCTTGT
GTAAACATCAGATTCACAACAAGGAAATTCAAGAAAAATTCACGGAAATG
TCATTGAGCAGTTGCGCCTCTGTCATTGCTTCCTCTCCGTGGTTCGGTCG
TTTGCGTTTGCTTTCTCATCGCTCCGTCCCTGACACTTCCGGTACAACAG
CAGGCCTCTACGCTCCGAAAAATATTTCGGGGTTCGAGAGTACTTCACAA
GCGAGAGAGGTACACGATGTCCCCCCACAAGATTGGCAACAAGCTCACTG
GTGACAAACGCCGGGATACCAAGACTCCGAACGATGAAGGAGCACGCCAA
GTGACCCAAGGGCCTCACCAAGCGCGTGCGCTGCTCGGCGTGATAGCGCA
GGTGTGACACGCTTCGATCGTGTCCCACCTGCGACATCACGCTGAACAAC
GGGCGCGCTCTCTGAGGTTTTTGGCCAGTTGGCGTGGTTGTTCGGCGATC
GGAGTCTTGGCATCCCGGCGTTTGTCACCAGTGAGCTTGTTTCTAATCTT
GCGGGAAGACGTCTTGTGCCTCCCTTGCTCTCGGTACCTTGGCGACCTCG
AATCCTTCATTGATAACGGTGGGATAAATTGAGCTCGTACAAGAGGCACA
AAAAATTTACCACAAAGAAACGCCCGCTGGCGTGGGTAACTGTGCTCCGT
CGTCCTCCGTAAGCGTGCCTTGCTTTTTCGGTGAAGGATGGTGGGCCCTA
TCGCTATCGAACAAGGGTTCCAGGTTCGCGAGGACATTGTCAGCTAGGGA
CAGTTGTACGCCCGGCCAGAAGAACGCCAGCCAACTCACCGGTTCTAAAC
CTCGGGATGATCGGACTCCGAACGGCGAACGAGCACGCCAAGTGGCCGAA
GACGCCTGGGAGCACCCACGTAGTGAGGCGTGATGGCGCAGGTGTGATAA
AGTCAAGGCGTATCACACCCTCGCTATCACGCCTCACGACGTGCCCGCTC
CCCGACGTCTTCGGCCACTTGGCGTGCCTGCTCGCCGTTCGGAGTCCCAG
CATCCCGAGGTTTAGAGCCAGTGAGTTGATTTGCGTTCTTCCGGCGGAGC
GCACGATATTTCCTCTTCGATGTGTCCGACACCTACTTCGAGAGCAACGG
GCGACGCGACGATGAAAGACAGGCAACATTTGACGGGAATAAGTCACCGA
GTAGTTGCACCTTCACGTGCATTGCCCCGTCCCGGTGATTTGTTTGGTTC
ACCTGTGCTACATCGTCGCGCCGTTTTTTGCACTTTCGGTACAGCAGTAA
GCCTCGTCGTTGTTGAAAAATATTTCGAGGTTTGAGAGGACTTCACAAGC
GAGAGAGGTACACCGTGTCCCCCCATAAGATTGGCAACAAACTGGCTGGA
TCTAAACCCCGTCATGTGACGACTCCGAACGATAGACGAGCACCCCAAGT
GGCCCAGTACTTCAAGGAGCGCGCGCGTTGCTCGGCGTGATGGCACGGGT
GTGGTACGCTTCGATCGTGTCCCACCTGCGGCATCACGCCGAACATCGTG
CGCGCTCCCTGAGGTCTTTGGCCACTTGGCGCGCTTTTTTGCCGGTCGGA
GTCTTCGCACCCCGGGGTTTCGCGCCAGTGAGTTTGTTTCCAGTCTTATT
GGGGGACGTGATGTACCTTCCTCGCTTTTTGAATACTCGCGAACCCGCAA
AACCGCTCTTGGACAACGCGAGGCCTGGGACTAAAAGAGCAAGGCGCAGT
GCTGTATCGGAGCACAGTCGAAATACACAAAAAACTTACAAAATATAAAT
ACCTCCGTGTGTACTTTTCTATTTTCCCGTGGTGTTTTGTGTTTTCCCTG
TGTGGTACATCATCGTGCCATTCCTTGCTCATATCGTCTGGTGGGCCTTA
TCCCTGTCGAACGAGGGTTCCAGGTTCGCGAAGACATCAACAGCGAGGGA
CACATCACACGCTCCGCCGTAAGGACGCCAGCGAACTCACTCGTTTTTAA
CCTCGAGATGTTGTGAGTCCGAACGGAAAACTAGCACGCCAAGTGGCCGA
GGGCCTCGGGAAGTACCCGAGTAATGAGGCGTGATCGCGCAGGTGTGACA
AAGCCATGGCGTACTACACCTACGCTCTCACACCTGACGACGTGGGCGGT
CGCCGACGTCTTCGGGCACTTGGCGTGCTTATTCCCCGTTCGGAGTCTGA
CCATCCCGGGGTTCACTGAGGGCGTTGGTCGTCGTTGTTCTGAGAGAGCG
TACGATACCCTGTACCCGCTGTCGATGTTACCGCGAACCTCAAGTGCTTC
TTCCTTGTCGGGGAGGCCTACCGCGAGAGCCAGGGGCGACGCGACGATTG
AGCACAGCCTATACGGACAAAAACTAGCCAACAAATATTGGCACCCGAGC
TTAAGTGCCTTCCGTTCTATGTTTTGTTTGCCTATGCTCCATCAAAGCAC
CGTGCCTTGCTCTTTCGGTTCAGCAGTAGGCCTCGCCGTTTTTGAAGAAG
ATTTCGAGGTTGGTAAAGACATCGAAAGCGAGGGAGGGACACCACATCCT
CTCACAAGATTGGCAACAAACTAGGTGGATGTCATCCCCGGAGTTATGAG
ACTCAAAACTTAACCGAGCACGCCAAGTGGCCGAGGGCCTCGAGGAGCGC
GGCTTTGCTCGGCGTGATGGCGCAGGTGTGACGCGCGTCGATCATGGCCC
ACCTGCACCATCACGCTGAAGAACGTACGCCCTCCTTGAGGTCTTTGACC
ACTTGGCATTCCTGTTTGCTGATCGGAGTCTAAGCATCTTGAAGTTAAGG
CTCACTCAGTTGGTTGCGAAGCTTCTGGAGGGGCGTGGTGAACTTCCCTC
GCTTTTGAAGCTCTCGCGAACGCAGGACCTTTTTTCGACGATCTCGAGGC
TTGTGAATGAAGGAACAAGGCACGGTTCTATGGTGAAGGACGTGGGCAAA
ATAGACAGAAGAACTTTAAAGTAGAAGCTCTTTCGCGGATACCGTTGCTT
TTTCCCCGTGGTGTGCCTGTTTCTGTTCTCCCGTGTGGTCCATCAGCGCA
CCATGCTTTGCTCTGTCAGCCTTGAGCCTCGCCCTTTCTTAACAAGTATT
CTAGGGCCGCGACCACGTCGCCAGCGAGGAAAGTGTCGCACTCTCCACCA
GAAGAACGGCAACCAACTCACCGGTTCGAAACCTCGGGATATCAAGACTT
CGAACGGCAAATTAGCATCCCAAGTGGTCGAAGACGTCAGGAAGCGCGCA
CGTCGCCAGGAGTGATTGTACGGGTGTGACACGCTTTGACCATGTCCCAC
CCGCGCATTCACGCCTGACGACGTGGGCGCTCCCTGATGTCTTCGACCAC
TTGGGATGCCTATTCGCCGTTCGAAGTCTTGAAATCCCGAGGTTTCGAGC
CGTTGAGTTGGTTGCCTTTCTTATGGCGGAGCGCGCGACACGTTCCTCGC
TTTTGACGTCATCGCGAATCTGGAACACTTGTTCGACAAGGGTGAGGCCT
ACTTGAAGTGGCAGGCTCGGCACGATGACGGAGCACAGGCAAACCGAACA
TATCACGTAGAGTGGTTTGGTTGATACGCGCAGTCGTCGCTCTCTTTTCT
TTTGTGTGTTTCGTTCCTCGACTGTACTGCCGTGTATATCCTTTTTATGT
AGCTTTCAATAGGGCTCGCCGTTATCGGAGGTGTTACAGGTTCACGACGA
TATCACAAACGAAAAAGAGAAACTTGTACGCACTGCCACAACGTCAACCA
ACATACCGTTTTTACGTATCGTATGCACGAATTATTTTGGAAACTGGGTC
GAAAACGGGGCTTATTATCATGTTGACCTCATAAAAATGCAATCCCGACA
AATACGCGGGGATAACACCGGACATTTCTCGTACGAAGGTCAAAATTTGG
ACCGTGCACACATGACTGTACACGCTGTGGGGTTTTAAGAACTTACGAAG
ATCACCTCAGACTACTAGACTTTTCGTCCGAGTTTCCAGCGTTGGATTCA
ATGATTTCAAGAAGACCGCTTTCAGAGTACTAGTCTAGTTTGTCTCTCCG
CATCCACTGCCTTTGCTTTTGCTACGAAACACACCCACTCAAACCCATCC
TCTTGCATTTCCTCCCGGCTCACGTTGTTTGCGGTGGGTTTGACGTTTGA
CGGCAGGACCCGCGCGTCAAGTTCAAGTTCTGAACCCCACTTATCAGCAC
CTCATGCCCCCCGCACAATGTTCAAGTTCCGAACCTCACGAAACGGCATC
TCGGAACCCGCGCGTACGTTCAAGTTCTGAATCCCCACGAAACGGCACCC
CAGGACCCGCGCGTCAAGTTCAAGTTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig70:310773..318599-

>mRNA_P-littoralis_Contig70.62.1 ID=mRNA_P-littoralis_Contig70.62.1|Name=mRNA_P-littoralis_Contig70.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=693bp|location=Sequence derived from alignment at P-littoralis_Contig70:310773..318599- (Pylaiella littoralis U1_48)
CAGGGACTTGCCTTTGCTTACCCCTCCCTCCCCGCCACCGGTTCTCAATA
TTCCTCTAGGGAGACACAGCAGCCAGTCTTTGAAGGGCTTCTTTATTTCT
GGTTGGTGGAGGAGATGCGTGCCCCTCTGGCAGCCACTTTAGTGTTAGCG
CACCTGGCAATGCGGAGCCTCGGCTTCTCTCCCTCCGTCTTTCGCGGTGG
GGGAGCGGCAAGCGCAGCAGCAGCATCATTCCGGCACGCTCTGCGGCGAT
CTCACGGTGGACACACCACCCGAGGGGCATTCCCCACGAGGGCAGCAACA
CCACAGGTCGTCACGACGCCCAAAACGTGCCGCACTGGCGAGACTGTCGG
TAAGATGGTCCTGCGCCCTGACTGGGAGAGAGAGGGCAGGGTGCACGGAT
TGCGCCTGCCTCCGGAGAGGACGGCCGAGAGAGCCTTCGAGTACCTCGTG
GACTACCCGTGCGAGTTCCAGATCAAGGTCATAGGGGTCAACGAGGGGAG
CTTCGCGGATGACATCGCCGCCACCGTCTCGGCTGTTTGCGAGGTGGAAG
CCTCTGATGTCAGGTTCACGGTTCGAGATACCAGCAGCGGGCGCTATCAG
AGCATCACAGTGCACGCCCCTGTCAAGAACGCCTCCATGCTGTACAAGTG
CTACGAGCTCATCGACGAGGACCCGCGCGTCAAGTTCAAGTTC
back to top