mRNA_P-littoralis_Contig70.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig70.50.1
Unique NamemRNA_P-littoralis_Contig70.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig70.50.1 vs. uniprot
Match: A0A6H5KVQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.830e-15
Identity = 66/124 (53.23%), Postives = 76/124 (61.29%), Query Frame = 2 
Query:  197 EREQREAAAKRKSAAKALAAQARHDNAIRFRRDSPSAGPPERSGLWGQ-GRHADAAATGGGGRRTRSRSPHAVTAVERGRSQTAP----ASDGSNTRTDGAGNVDQCVAAARMTRSRPRPAWQQ 553
            ER++RE AAKRKSAAKALAAQAR +NA+RFRR++ SAGPPE +G  G+ GR   A   G  G R RS SP  +T   RGR Q  P    A+ GS TR  G     Q V AA     RPR  WQQ
Sbjct:   18 ERKRREIAAKRKSAAKALAAQARRENAVRFRRETVSAGPPEGAGGGGRRGREGTAVGEGSSGTRARSHSPRGITET-RGRGQNVPPDPAAAGGSRTRWGG----HQGVVAASSKHPRPRSGWQQ 136
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig70.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVQ6_9PHAE3.830e-1553.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig70contigP-littoralis_Contig70:272229..273235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size636
Hectar predicted targeting categoryother localisation
Exons2
Cds size627
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791463.50604-CDS-P-littoralis_Contig70:272228..2726661680791463.50604-CDS-P-littoralis_Contig70:272228..272666Pylaiella littoralis U1_48CDSP-littoralis_Contig70 272229..272666 -
1680791463.5197372-CDS-P-littoralis_Contig70:273039..2732281680791463.5197372-CDS-P-littoralis_Contig70:273039..273228Pylaiella littoralis U1_48CDSP-littoralis_Contig70 273040..273228 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791463.5372722-UTR-P-littoralis_Contig70:273228..2732351680791463.5372722-UTR-P-littoralis_Contig70:273228..273235Pylaiella littoralis U1_48UTRP-littoralis_Contig70 273229..273235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig70.50.1prot_P-littoralis_Contig70.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig70 272229..273228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig70.50.1

>prot_P-littoralis_Contig70.50.1 ID=prot_P-littoralis_Contig70.50.1|Name=mRNA_P-littoralis_Contig70.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=209bp
MLQHRSPAPAGGRRQAGGGARQPKAFGVAVDRAPIILTRAELQRRTRERS
RLAALKIAEEHGKEREQREAAAKRKSAAKALAAQARHDNAIRFRRDSPSA
GPPERSGLWGQGRHADAAATGGGGRRTRSRSPHAVTAVERGRSQTAPASD
GSNTRTDGAGNVDQCVAAARMTRSRPRPAWQQQMQQRQNLAREMYQPEVN
RKDSAGLSR
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mRNA from alignment at P-littoralis_Contig70:272229..273235-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig70.50.1 ID=mRNA_P-littoralis_Contig70.50.1|Name=mRNA_P-littoralis_Contig70.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1007bp|location=Sequence derived from alignment at P-littoralis_Contig70:272229..273235- (Pylaiella littoralis U1_48)
TCAACAGATGTTGCAGCATCGCAGTCCTGCGCCAGCCGGGGGGCGCAGGC
AGGCGGGGGGCGGGGCCAGACAGCCAAAGGCCTTCGGGGTGGCGGTCGAC
CGCGCTCCCATCATCCTCACGAGGGCAGAGCTGCAAAGGCGAACACGAGA
GCGCTCGAGGCTGGCTGCCCTCAAGATCGCCGAGGAACACGGGAAGGCGA
GAAAGGGCGGGAAGGGGGAGCGCATGGGGGCTCTTTTTGTGTATACAAAG
AAGCGTACGTATGTTTACTCATGTCGGCTTAATTTCTGGGGCGAGGAGAA
AAGCAGAGAGAAAGAGAGGAAGAGAGGGATTTGAAAGGGGGAGGAAAACT
AGCACAATATAAGATTAAAGACTCACACCGAGAGAGGGGGAAATCAGCGA
ATACTTTGCTTGACCTACGCCGCCGAGCGTTTGCAAGCCGCAAGCCAGTC
TACGTGTAGTATCCCCGACTCTACCGGCGCAAGAGCCCGCCACGCTCACC
TCTAACGCCGTCCCACTCTCCCAACGCCCTCGCCTTCCTCCTCGCCTTGT
CTTTGCTTTTCTTTCTCAGGAGCGGGAGCAGCGCGAGGCGGCCGCGAAGC
GGAAGTCTGCGGCGAAGGCCCTCGCGGCTCAAGCCCGCCATGATAACGCT
ATTCGGTTTCGTCGTGACTCTCCATCTGCGGGACCGCCCGAGAGGAGCGG
CCTATGGGGGCAGGGTCGTCACGCGGATGCTGCTGCTACCGGCGGGGGAG
GCCGACGGACACGGTCGCGCTCTCCCCATGCTGTCACTGCTGTCGAGCGG
GGCCGAAGCCAGACCGCCCCCGCTTCTGACGGGTCGAACACAAGGACGGA
CGGGGCTGGTAATGTGGACCAATGTGTTGCTGCGGCGAGGATGACGCGCT
CTCGCCCTCGCCCAGCGTGGCAGCAGCAGATGCAGCAGAGACAAAATCTA
GCACGAGAGATGTACCAACCAGAGGTCAACCGCAAGGACAGCGCTGGTCT
TAGCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig70:272229..273235-

>mRNA_P-littoralis_Contig70.50.1 ID=mRNA_P-littoralis_Contig70.50.1|Name=mRNA_P-littoralis_Contig70.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=627bp|location=Sequence derived from alignment at P-littoralis_Contig70:272229..273235- (Pylaiella littoralis U1_48)
ATGTTGCAGCATCGCAGTCCTGCGCCAGCCGGGGGGCGCAGGCAGGCGGG
GGGCGGGGCCAGACAGCCAAAGGCCTTCGGGGTGGCGGTCGACCGCGCTC
CCATCATCCTCACGAGGGCAGAGCTGCAAAGGCGAACACGAGAGCGCTCG
AGGCTGGCTGCCCTCAAGATCGCCGAGGAACACGGGAAGGAGCGGGAGCA
GCGCGAGGCGGCCGCGAAGCGGAAGTCTGCGGCGAAGGCCCTCGCGGCTC
AAGCCCGCCATGATAACGCTATTCGGTTTCGTCGTGACTCTCCATCTGCG
GGACCGCCCGAGAGGAGCGGCCTATGGGGGCAGGGTCGTCACGCGGATGC
TGCTGCTACCGGCGGGGGAGGCCGACGGACACGGTCGCGCTCTCCCCATG
CTGTCACTGCTGTCGAGCGGGGCCGAAGCCAGACCGCCCCCGCTTCTGAC
GGGTCGAACACAAGGACGGACGGGGCTGGTAATGTGGACCAATGTGTTGC
TGCGGCGAGGATGACGCGCTCTCGCCCTCGCCCAGCGTGGCAGCAGCAGA
TGCAGCAGAGACAAAATCTAGCACGAGAGATGTACCAACCAGAGGTCAAC
CGCAAGGACAGCGCTGGTCTTAGCCGC
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