mRNA_P-littoralis_Contig70.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig70.33.1
Unique NamemRNA_P-littoralis_Contig70.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig70.33.1 vs. uniprot
Match: D7FUD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD4_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 1.920e-85
Identity = 137/185 (74.05%), Postives = 152/185 (82.16%), Query Frame = 1 
Query:    1 MLEAGHSGDELERAIRLAIWGEGSSRRMIRVPSRLQPWDNAHNTEGGLDGIGFDGRPTVPERFRPREPFLVVAAEEVHRFGTEGRVEKPHGRADCGPARRRREIQEMMRERVQVQEDFLAGLERDRREWRRYRTWVAKSGAVAAKQKRRQARLAYGTDQVDGIGSDLTSCTLDYHEKRREKQEIA 555
            MLEAGHSGD LERAIRLAIWGE SSRR +RVPSR QPWDN H  EGGL+GIG DGRP VPERFRPREPFL+V A+EVH F    RVEKPH RADCGPARRRR IQE MR RVQVQED+LAGLE+DRREWRRY+    K+ +VA KQ+R + RLAYGTD  DGIGSD+TSC  ++ E RREKQE+A
Sbjct:   75 MLEAGHSGDSLERAIRLAIWGESSSRRSMRVPSRSQPWDNPHKIEGGLNGIGPDGRPIVPERFRPREPFLLVKADEVHTFDAGHRVEKPHERADCGPARRRRVIQENMRARVQVQEDYLAGLEQDRREWRRYQVQAVKTKSVAVKQRRLRMRLAYGTDLSDGIGSDITSCAPEFEELRREKQEMA 259
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig70.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUD4_ECTSI1.920e-8574.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig70contigP-littoralis_Contig70:192567..195155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size556
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_000670.1
Cds size555
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791462.8486514-CDS-P-littoralis_Contig70:192566..1926211680791462.8486514-CDS-P-littoralis_Contig70:192566..192621Pylaiella littoralis U1_48CDSP-littoralis_Contig70 192567..192621 -
1680791462.8643706-CDS-P-littoralis_Contig70:193490..1936751680791462.8643706-CDS-P-littoralis_Contig70:193490..193675Pylaiella littoralis U1_48CDSP-littoralis_Contig70 193491..193675 -
1680791462.878168-CDS-P-littoralis_Contig70:194332..1945641680791462.878168-CDS-P-littoralis_Contig70:194332..194564Pylaiella littoralis U1_48CDSP-littoralis_Contig70 194333..194564 -
1680791462.8882828-CDS-P-littoralis_Contig70:195072..1951551680791462.8882828-CDS-P-littoralis_Contig70:195072..195155Pylaiella littoralis U1_48CDSP-littoralis_Contig70 195073..195155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig70.33.1prot_P-littoralis_Contig70.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig70 192567..195155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig70.33.1

>prot_P-littoralis_Contig70.33.1 ID=prot_P-littoralis_Contig70.33.1|Name=mRNA_P-littoralis_Contig70.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp
MLEAGHSGDELERAIRLAIWGEGSSRRMIRVPSRLQPWDNAHNTEGGLDG
IGFDGRPTVPERFRPREPFLVVAAEEVHRFGTEGRVEKPHGRADCGPARR
RREIQEMMRERVQVQEDFLAGLERDRREWRRYRTWVAKSGAVAAKQKRRQ
ARLAYGTDQVDGIGSDLTSCTLDYHEKRREKQEIA
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mRNA from alignment at P-littoralis_Contig70:192567..195155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig70.33.1 ID=mRNA_P-littoralis_Contig70.33.1|Name=mRNA_P-littoralis_Contig70.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2589bp|location=Sequence derived from alignment at P-littoralis_Contig70:192567..195155- (Pylaiella littoralis U1_48)
ATGTTGGAGGCTGGTCATAGCGGGGACGAGTTAGAACGAGCGATTCGTCT
GGCTATTTGGGGAGAAGGATCAAGCCGGCGAATGTCAGTATCGTGTTTGT
TGCTGCTGTTGTCTGTACTGCTTGGTGTTGGCGTTGTCGGTCTACAACCC
GGGGCGAATTCAATTTACCTTGTGTACCTTGTGTTCCTTGTGTGATCCGT
TTTCTTGGGATCGAACCGTCATGATCAGTGATTTTGGTATGTAGCGCCAC
CAAATTTTGCAGTTCCGTGCCATTTCCTTCTTGCCACGACTTCGGCATTC
GTGTGGCGGACGCATGCAGTTCTTGGTTCTTGGATAGCAGTAGAGAGCAT
GACGATGGTACAAAGAAGCCCCTCTTCTCTGGCATGTGCGTGTATTTATG
CTTACAACCGAGGGGCGGCTTTCACGGCATCGAAGCGGGGCGCTCGTCGG
TAAGGGACCCGATCCTCCAAATCGCGTAGGGACATCGTTTTCGGGAAGGT
CAAATAATACCACGACAGCCACGCAGGCCCACTACACAGGAATGGAGATG
GTGCGGCTCATGCCACCCCACATATCACACACACATCGCAGGATTCGCGT
GCCATCACGTTTGCAGCCATGGGACAACGCCCACAACACCGAGGGTGGCC
TGGACGGCATCGGGTTCGACGGTAGACCTACTGTGCCGGAGCGATTCAGG
CCGAGGGAACCCTTCTTAGTGGTAGCGGCGGAAGAAGTACACAGGTTTGG
GACCGAGGGTCGGGTGGAGAAGCCTCATGGGAGAGCGGACTGCGGTCCGG
CCAGGCGGCGACGCGAGATCCAGGCAGGAAAAAACGGGCGGGAACCTAGC
CGTTTAGCCGTTTCGTAGTTCTTGTTCTTGATTCCAATTTACTCATACAC
ATATGGGCTATTTTACCAGCCGGGGTCTTCGTCTCTCTCTCTCTCTCTCT
CTCTCTCTTCCACTCAGTCTGTCAGTTGGTGGTTGTGAGTTTCAGAAAAT
TATTCGTGGTGCTGCCGTGTTTCTGCAAGGGGAGATGCGAGCGCAGTTCC
CATAAATCTGGTTACAGTGATGTGTGACATGATATTACTCTATACGCGAG
ATACGCGAAAAAAGGGAATACCGGTAATCAGATGTGCCGGAAAAATCCAG
GACCCTACCCGCACGCTCTCCGAACGGATAAATGACCGATCAATGTTCTT
GGTAGAACTAACATCCCTATGCCGCGACCGCGGAGTACTTGCCACGCCGG
ATTTGAGTGGCGCGGGGGACAATCGTTTGAGTCGGAGCAAAAAATGAAAA
TGAAACGAGTAGTTGCCGGGCCGAGAGTGAAAGCCTTGAGTCAGATGGTG
TCAAAGGTTCGACGACAAACAACAAAAGCTATTCTTCCTCTTTTTTCGTT
GAATCTCAAGCTCTTTCTTCCGAAATTAAATATTTTACGTGCGACCTCAC
TCGTCGTTGACGTCGGTACACCACTAGCAGGAAATGATGCGGGAGAGGGT
GCAGGTGCAGGAGGACTTTCTAGCCGGGCTAGAGCGCGACCGCCGGGAAT
GGCGTCGCTATCGAACCTGGGTCGCCAAGAGCGGTGCCGTTGCAGCCAAA
CAAAAAAGGAGGCAGGCTCGCCTCGCCTATGGCACCGACCAAGTTGACGG
TATCGGGAGCGATTTGTGAGTGTAACGAGCGCTCGATTCGTTAGTTATTC
GATTCGGTTTCCGCTTCTGTCTTGCTTGGCTCGTTTTTATCCTGGTTTCA
CGCCGGCGGAGAAGAGGCTGTACGTTTTCCTCGCAAGTGGTAGCGGCCAA
TTCGATGGGAGGTTGCTGAGAGGATCACGAGCTACTCTAAGGCTGAACAG
ACACGATTGATCCGAATGCCTGCCTTGCGCGCCTTGTCCGATGAGTCCAA
AGGGTCTTAGCATTTCTTTCAAAACTCGTTTGTCTCTTCCGTGAAATTCC
TTTGAAATGTTGCCGCGGTAGAACATGTAGAGTTCCGAAATCGAAACGGC
CCCCGAGAACCGTACTATGATAACTCATCACGCGTTTGTTGTTGTATCAG
CACCACTTATGAACATTTTTATCTGTCTTCCCGAAAACTTTCTTCAGGAC
CGTTATGGTGGCAGACCGTCTTACGTCCAAGAGACGGTCTTGATCGGTTC
TGTGAAAATTGATAAATCCGGTTTGGCCGTCGTCGTGGTCCAACGCTGTT
CACCGTGTACTACCCGAGCGTTCAGTACGTATACGCGTACTTTTCGCGAG
TCCTTTGAATGTTTAATTACACTGATACTAATTCAAACAATATTGAGACG
AAAAAAACATTACCCAAGGACCACCCCAACACCCAACCACCCAATACAGC
ACTCACGAAGATATACTGAAGGGCCTGTATGCATCGTATTCATCCGATAG
GCTGCCGACACCGGGATACTTGTTCTCTCACCAAGGCATCGGAAGGGTTT
TGATTGCGAAGGTACCGACAACAGTACACAGCCGAATAAAAAGGTTCAGC
ATTTCCTGAATATTTATAAATTGTACCCCGTTAGGACATCCTGCACCCTG
GACTATCACGAGAAGCGCCGAGAGAAGCAGGAGATAGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig70:192567..195155-

>mRNA_P-littoralis_Contig70.33.1 ID=mRNA_P-littoralis_Contig70.33.1|Name=mRNA_P-littoralis_Contig70.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig70:192567..195155- (Pylaiella littoralis U1_48)
ATGTTGGAGGCTGGTCATAGCGGGGACGAGTTAGAACGAGCGATTCGTCT
GGCTATTTGGGGAGAAGGATCAAGCCGGCGAATGATTCGCGTGCCATCAC
GTTTGCAGCCATGGGACAACGCCCACAACACCGAGGGTGGCCTGGACGGC
ATCGGGTTCGACGGTAGACCTACTGTGCCGGAGCGATTCAGGCCGAGGGA
ACCCTTCTTAGTGGTAGCGGCGGAAGAAGTACACAGGTTTGGGACCGAGG
GTCGGGTGGAGAAGCCTCATGGGAGAGCGGACTGCGGTCCGGCCAGGCGG
CGACGCGAGATCCAGGAAATGATGCGGGAGAGGGTGCAGGTGCAGGAGGA
CTTTCTAGCCGGGCTAGAGCGCGACCGCCGGGAATGGCGTCGCTATCGAA
CCTGGGTCGCCAAGAGCGGTGCCGTTGCAGCCAAACAAAAAAGGAGGCAG
GCTCGCCTCGCCTATGGCACCGACCAAGTTGACGGTATCGGGAGCGATTT
GACATCCTGCACCCTGGACTATCACGAGAAGCGCCGAGAGAAGCAGGAGA
TAGCC
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