mRNA_P-littoralis_Contig70.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig70.38.1
Unique NamemRNA_P-littoralis_Contig70.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig70.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig70contigP-littoralis_Contig70:217983..218711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size731
Hectar predicted targeting categoryother localisation
Exons1
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791461.8425083-UTR-P-littoralis_Contig70:217982..2183121680791461.8425083-UTR-P-littoralis_Contig70:217982..218312Pylaiella littoralis U1_48UTRP-littoralis_Contig70 217983..218312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791461.8525717-CDS-P-littoralis_Contig70:218312..2187111680791461.8525717-CDS-P-littoralis_Contig70:218312..218711Pylaiella littoralis U1_48CDSP-littoralis_Contig70 218313..218711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig70.38.1prot_P-littoralis_Contig70.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig70 218313..218711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig70.38.1

>prot_P-littoralis_Contig70.38.1 ID=prot_P-littoralis_Contig70.38.1|Name=mRNA_P-littoralis_Contig70.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MCADGAGRRSRMDYIFISRFRTFRTWSDFCMGLRLRLRSRLRLRPLLRYG
YGYRLWYVRPSEIRSVTSMLNRQDFSACFREQFAFWSFRVAFFTLRYSFA
VFVVVKSQWRSGSSVGVPARCVTCMFTQGIDNG
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mRNA from alignment at P-littoralis_Contig70:217983..218711+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig70.38.1 ID=mRNA_P-littoralis_Contig70.38.1|Name=mRNA_P-littoralis_Contig70.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=729bp|location=Sequence derived from alignment at P-littoralis_Contig70:217983..218711+ (Pylaiella littoralis U1_48)
TGGGTGTCTCACGTTTTAATGGAGAGTCGCTCTCGTCACACAGGAGCCTA
GCGGTAAGTTCATCTGAACTGTGTGTTGTTCATTTATTTTTCATCATTAT
TTTTATTTGCATGGCATGCGGGATCCAACGGGCACCTTTCGGTGTTTTTG
TTGCCCATTGTTTCGCTTTTTATGTCAACTCGTCTTTTTTATGCTTTATT
TTTTGTTCATTTTTATGCTTGTGTTTCTGTTTCGGTTAGAAGCTCTCAGA
CATGTGTACGTACAGTAGTTGTCTTGTATCCATCACCGAGCGCAGCAGTA
CTGGCATTTTTACGCCTGTAAAATAGGTACATGTGTGCCGACGGAGCTGG
GCGGCGATCGCGGATGGATTATATATTCATCTCGCGTTTTCGCACGTTCA
GGACTTGGTCGGATTTTTGTATGGGGTTACGATTGCGATTACGATCACGG
TTACGTTTACGGCCACTGCTGCGTTACGGATACGGGTACCGTTTATGGTA
CGTTCGTCCTTCAGAAATTCGGAGTGTGACTTCCATGTTGAACAGACAGG
ATTTTTCCGCCTGTTTTCGTGAGCAGTTTGCGTTCTGGTCCTTCCGAGTT
GCGTTTTTCACTCTTAGGTATTCATTTGCAGTATTTGTTGTCGTAAAGAG
CCAGTGGCGTTCTGGTTCTTCCGTGGGCGTACCAGCTCGGTGTGTTACTT
GTATGTTCACTCAAGGGATTGACAACGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig70:217983..218711+

>mRNA_P-littoralis_Contig70.38.1 ID=mRNA_P-littoralis_Contig70.38.1|Name=mRNA_P-littoralis_Contig70.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig70:217983..218711+ (Pylaiella littoralis U1_48)
ATGTGTGCCGACGGAGCTGGGCGGCGATCGCGGATGGATTATATATTCAT
CTCGCGTTTTCGCACGTTCAGGACTTGGTCGGATTTTTGTATGGGGTTAC
GATTGCGATTACGATCACGGTTACGTTTACGGCCACTGCTGCGTTACGGA
TACGGGTACCGTTTATGGTACGTTCGTCCTTCAGAAATTCGGAGTGTGAC
TTCCATGTTGAACAGACAGGATTTTTCCGCCTGTTTTCGTGAGCAGTTTG
CGTTCTGGTCCTTCCGAGTTGCGTTTTTCACTCTTAGGTATTCATTTGCA
GTATTTGTTGTCGTAAAGAGCCAGTGGCGTTCTGGTTCTTCCGTGGGCGT
ACCAGCTCGGTGTGTTACTTGTATGTTCACTCAAGGGATTGACAACGGA
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