mRNA_P-littoralis_Contig70.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig70.34.1
Unique NamemRNA_P-littoralis_Contig70.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig70.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig70contigP-littoralis_Contig70:197320..200894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size544
Hectar predicted targeting categoryother localisation
Exons2
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791461.7941115-UTR-P-littoralis_Contig70:197319..1975211680791461.7941115-UTR-P-littoralis_Contig70:197319..197521Pylaiella littoralis U1_48UTRP-littoralis_Contig70 197320..197521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791461.8073828-CDS-P-littoralis_Contig70:200552..2008941680791461.8073828-CDS-P-littoralis_Contig70:200552..200894Pylaiella littoralis U1_48CDSP-littoralis_Contig70 200553..200894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig70.34.1prot_P-littoralis_Contig70.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig70 200553..200894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig70.34.1

>prot_P-littoralis_Contig70.34.1 ID=prot_P-littoralis_Contig70.34.1|Name=mRNA_P-littoralis_Contig70.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MARPAPASATGARSSDDGSCSTMTAVSTWSDDDKNGNDAPGTFSPSPPPP
LPPLPRDAAGADDGLMSTTTAVTTVIVPSGDDHADGGGPCDDAPTTSGSR
RQRSNSAATVTASG
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mRNA from alignment at P-littoralis_Contig70:197320..200894+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig70.34.1 ID=mRNA_P-littoralis_Contig70.34.1|Name=mRNA_P-littoralis_Contig70.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3575bp|location=Sequence derived from alignment at P-littoralis_Contig70:197320..200894+ (Pylaiella littoralis U1_48)
CGAGCAGGAGTGGGAGAAGAGACACACCAACCAGCGCCGTGTACAGTCTA
CAGCAGTGCTGCGAGCAGAGACGAAGACAGGTATTGGGACAGGCAGAGGG
GCAACCAAATTATCCCGAGAGAGACTGAGCGGTGGCTGCAGCCACGATCG
ATTCCACGGACCAACTGAGTGAGCTAGGGCTAGCTGTCGGTGCCAAAAGC
TTGTGAGTGCACGACAACATGCAACCTAAAAAGTTGGGACCGTGTGTGAA
TGATATCCATCTGCTGTTGTTGTGCGTTTTTTGGTTGAACGTGCTGCCAG
CTGCCCGTGGCAGCTGACTGTACCCTGCCAAGCACGTGTGCGACAGAGCG
TGATATTCACGGAGTATCCCCAACGCCTACGCCCGGAAATGTCTGGTAGT
GGGGGTCATAGGTTAATGCTGCTTTGTTTTTGTCAGCCGCAGTTCAACAA
TGCTGTCCGTGCTCCGGCTTCTCATTCCGTTGCTACATGCAACGAGGTGC
GTAAACGAAAGTTGTGCCCGCGAGGCGTCCCGGCACTGCTCTGCTGGTAC
CAGCAGCACCCTGGGTGTGGTGTATCGTGTTTCGTCGTGTGATCGGTCGG
ACGATAGAGATGGTCGGCACAGATTCACAGCAATAGCAAGGGAAATCCTA
TGTGGTGAAGCATAGGCGTTGCTGTGGTGCTGCTGCCTGATGTTTGAGTT
GTGTGGGGTACAGCAAGCAGTAGTGTCTGTGAAACAAATCAGATTTGGAT
CGGCCAGCACTCGCCCACAGACAAACGGAGCACTGCTGTAACGAAGGTGT
TGAAAGTTGTTCGTTGTTCGTGGTTGCCAAGGGCAGCATCAGCAGCCAGC
GAGGCGGTTCGACAGGAGTGAAGGCGCGGAGAAGGTGTCCACAGTGAAGT
GGACCCATTGTGGCGGAGGAGTTTGAGGCAACCATGGGCAATATCGGCCA
GTGCAAGAACAGCATCGAGACCGTCCTCGACGAAATCACTTGTCACACCT
CACGCCTTCAACTTGATCATTTCTTTATGCGTTGGGTTGGGTTAGATTTA
CGTCACCCGTTTTTTGGTAGAGAGAGGAGAGACATGACAGCAGTGCGAAT
TTCGTAATTCGTGGTTTTCCTGCCCTCGCGATGCCCTTCACAGCGTGGTT
TGTGAGCTCGTGATATTCTCTGTACATATCATATACCACCAGGTTGTTTG
TTGTTGTTGATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCCGTGG
TCACAAACCAGGCACATATCGTGCTAGGAGGAAAAAAAAATAAAAAAATA
AAATATATGGACTATACCACCAGGTATACAGCTGTAGACGATTCGGGAAA
GACTTTGGGTGATTTCGCGATATATCTTTTTTTTCGAAAAAAAAGTGTGA
CGGCTCTCTCTCGTCATCATCAAATGGTGACACAATCGAGAATTTTGCAT
GACGTGTGATATGACGTGTCTCGTACAGACAAATGATGTACGTAGTACGG
AGTATGTTTTTCCGACTTTCCTTTTTGTCCCGGGCGGGCTCGTTGCACGT
TGCAAGCAGCAACCCAGACGGCAACTGCTGTACCCTGCAGCCACAAGGGT
TCATGAGTGGAACGGGGGGAGGCTGATGACGATGTTGGTGTTGTCATTCG
GGTTTTTGAAAACCACGTGGCACAATGAGAGAAAGGCTAGAAAAAGTCGC
CGTTGGTACCTTCTTCCTTAATTTTGTTCCTTTGTCGGTGTAACTCCTGT
AGTCTACTTCAATATGCTTCACACTTTTATGATATGATCACTGGCGACGG
TATGTACCATACGTACATGATACGTCCCGGCACGATCGTCGTAAAAAGCG
ATGCGCAGTACAGGTATGCATGGTATAGTGTGAGAAATAACGAAATATCA
ACAATCATCCGCAGACAATGCGTGCGAACGACAAACGACTCCCAGGATGC
TTCATGTGGGATCCTTGAAACCGATGTATCGCATCATGCCACCAAAAATT
TCTGTGTTGTAGACTATGTATGATATGCTACCGCCGCGGTGTTTGACTGT
TTGGGACAGCAGGTATGCGCCACCCTCTTTCTTTCCCTTCGAAGAATGAT
GTTACGACGTTAAACCTCGTACAGCAGAGCATCGTCGACGGCGCGGGAAC
AACCATAAACGTTCACGTGAAGGGGTACGCTCGTTTCAAAGAGAGGAGGC
TGCGGTTGACCGTTCAATGATACGACTGAATACTGCTGTCTGCGGGTCTG
CGCCAATGCTGTTTGTACAGCAGCAGTGCTCCGTTTCGCGATACAGCGGT
GAAAAAGTTATTTTTGATCTCCTGGCGACAGCGCTGTCGGCGTGGTTTCG
CCGCAGACGATAAAAAGCTGTGCTATCTTCAACAAACCAATCTTCATTTC
AGTACCACAGCGGTATACAGGTCAAGTGCTACAGCACGTACCGGATACGA
AACCCACAGACAGAAGTCGTATCATATGATGCCCACTATATCACTGGCAC
TTTTGCGCATACGGACGAAAACGTGTACCTCGAAGTAGTACACATACCGG
ATACGAAAACTACAGCAGTCGTATGATACCACATGATGCAAAGCACTTTA
TCGCGAATACTATCATGCATTACGCACATATCATACATGCGGACACATAC
ACGACACTTGAACCCATTGGACCATCCGACGATGTGCGGGACAGAATGAA
AAACAGAACAACTCTTTGCAACAAGAGGAGCGCCTTCTCGAATTTCGAAT
CGAGCAGACGTTCGGCTGTTCTCGTCGCCACCTCTCGCGATGCAGGAGTT
TGATGCTCGCATCCTCCTTCGTCTCGATGACATCACAACATAAAAGCAAC
GACTGCCGCGACCGCTAATTTTTGTCACATCATTTGTATCACACTCCTCT
GGATTTCTTTGGCTGTGCTGCCGTAAAGTGCAGCCGCACATTGAAAGAAG
GACCGTTGGCCCTTATTTAACCCGTGCTAAGCCATTTAGCTTGTATCGCG
AACCCTGTGCACAGCCAAGCACTCAGCAGAGGACTTTTCCCATCTCGTCC
AACAAGTTGGTGACACAGCAGGTGCAGACAACACTTCTTGTCATGATGCC
GGGAGCACGAAGTACCGTATTTCGTGCGACTTCCTTCGAGCACGAAGCAC
ATCATATTTTTGCTGATCCTTTAAAACCGATGTCCATGTCATTCCCAATC
GCCGTGTCTCGTTTGTGCTTTTTTCTACTCCAGATGGCACGTCCGGCGCC
CGCGTCAGCAACGGGTGCCCGCTCTTCTGACGATGGCTCGTGCTCGACGA
TGACGGCGGTGTCGACATGGAGCGACGACGACAAGAACGGTAACGATGCT
CCTGGCACATTTTCACCGTCGCCGCCGCCGCCGCTGCCGCCGCTGCCCCG
GGATGCTGCGGGTGCCGATGATGGTTTGATGTCAACCACGACGGCGGTGA
CGACCGTGATCGTGCCGAGCGGTGATGACCACGCTGACGGCGGAGGGCCG
TGCGACGATGCCCCCACCACGAGTGGCAGTCGCCGACAGCGCAGCAATTC
CGCCGCAACTGTGACCGCCAGCGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig70:197320..200894+

>mRNA_P-littoralis_Contig70.34.1 ID=mRNA_P-littoralis_Contig70.34.1|Name=mRNA_P-littoralis_Contig70.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig70:197320..200894+ (Pylaiella littoralis U1_48)
ATGGCACGTCCGGCGCCCGCGTCAGCAACGGGTGCCCGCTCTTCTGACGA
TGGCTCGTGCTCGACGATGACGGCGGTGTCGACATGGAGCGACGACGACA
AGAACGGTAACGATGCTCCTGGCACATTTTCACCGTCGCCGCCGCCGCCG
CTGCCGCCGCTGCCCCGGGATGCTGCGGGTGCCGATGATGGTTTGATGTC
AACCACGACGGCGGTGACGACCGTGATCGTGCCGAGCGGTGATGACCACG
CTGACGGCGGAGGGCCGTGCGACGATGCCCCCACCACGAGTGGCAGTCGC
CGACAGCGCAGCAATTCCGCCGCAACTGTGACCGCCAGCGGT
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