mRNA_P-littoralis_Contig70.73.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig70.73.1
Unique NamemRNA_P-littoralis_Contig70.73.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig70.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig70contigP-littoralis_Contig70:368844..372243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size654
Hectar predicted targeting categoryother localisation
Exons2
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791461.563595-UTR-P-littoralis_Contig70:368843..3689751680791461.563595-UTR-P-littoralis_Contig70:368843..368975Pylaiella littoralis U1_48UTRP-littoralis_Contig70 368844..368975 +
1680791461.6003032-UTR-P-littoralis_Contig70:372201..3722431680791461.6003032-UTR-P-littoralis_Contig70:372201..372243Pylaiella littoralis U1_48UTRP-littoralis_Contig70 372202..372243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791461.5774379-CDS-P-littoralis_Contig70:368975..3691191680791461.5774379-CDS-P-littoralis_Contig70:368975..369119Pylaiella littoralis U1_48CDSP-littoralis_Contig70 368976..369119 +
1680791461.5872378-CDS-P-littoralis_Contig70:371865..3722011680791461.5872378-CDS-P-littoralis_Contig70:371865..372201Pylaiella littoralis U1_48CDSP-littoralis_Contig70 371866..372201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig70.73.1prot_P-littoralis_Contig70.73.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig70 368976..372201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig70.73.1

>prot_P-littoralis_Contig70.73.1 ID=prot_P-littoralis_Contig70.73.1|Name=mRNA_P-littoralis_Contig70.73.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
MVPSTRERDYCPLSRVVFQPFKGHRREATTWERPDTIQPRVRPTAPHSVV
LRFPMSSPADSGADIQGVTRAEFELQVQAGENERSHLSAEVADLQNALEA
KLATVPTTLQQVQQPRQGEAHAGPHAGRGGRRTSDASGLRVRGRPAISRG
HGGVRPGGP*
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mRNA from alignment at P-littoralis_Contig70:368844..372243+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig70.73.1 ID=mRNA_P-littoralis_Contig70.73.1|Name=mRNA_P-littoralis_Contig70.73.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3400bp|location=Sequence derived from alignment at P-littoralis_Contig70:368844..372243+ (Pylaiella littoralis U1_48)
CAGCAACCCACACGCAACCTTCTGACATTCACGCGTGAGTTCAAATCCCA
GTGCAGTAACACGATCTGGGGTGTTTTCTCACATTGCGCGTGAAACTGGG
AAGCGGTTAAGTCGTGAGAAACCAAAAATTCGATGGTACCATCGACGAGG
GAAAGGGATTACTGTCCCCTTTCTCGTGTCGTTTTTCAGCCGTTCAAGGG
CCATCGGCGCGAGGCTACGACGTGGGAGCGGCCGGACACCATCCAGCCGC
GAGTCAGACCTACTGCGCCACACTCGGTACGAGCGACGCATTTAACATTG
TTAGGACTGAAAGGAAAATCTCCTGTTTTGTGGTTGTGCGCGGACACGCG
CTTCGAATGCGGATAGGCACGGAGTGTGTATGGCTAGGGTTAGGGCTGAG
CCTAAATAGGCAGATGCACATTACCACATGGCGGGCACACAGCAGAGCAC
CACGTTACACGCGCTGCCGGTGCCGCAATACGTGCGTACGTCACCACAAG
TATCAGAATGACTTAAAATTAGACAGGGATCCTCAAATTATAAATGTAAC
GGCGATCTCTTCGCCTCTCCCTGGCGATCACTCCCATTGCTGGTTTGCGT
CTCAAATCGTTTTCGTTCAAAAGTTATAACAAAAACACATACTTTGGAGT
TTTTTTTCTTTTCGGAGCCAACATTACTGTCCGAGAGAAGAGTCGCGACC
ATGAGCTTTGAACACTACAGCAGGCACGTATACACGGAATCGTACCGCGC
ACACCTATCGTACATACGTTACGCCGTAGGCACTGCTGGGCAGATACGGT
ACGGTAACAAGGCCGCACCCAGCCCGTATACGGCAGTTGCACGAAAACCG
CACGTTAGTACGTACGAAGTGCCCATGCGTGATCCGGGGTAGGTAGTGGG
GCATGCGCACTTATCGGTGTCAGAACCCAAGACGGAGACCATGTGTATGC
TCGCGAAAGGGATGGGGGCGTGCTCGTTCACGATCGACGCTGCCGGGATC
GTCTTCAAGCAAGAGAAATACTTTGTTTATCTCGGGGGTAAGATTTGGGA
GGACGGTAGCATTGAGGGCGAGATTAACCACCGAGTGCAGCGAGCGCAGG
CCTGCTTCCGGCGCAACAGCCAGGCAATGTAAGACCGCCCGGGGGCCCCT
CTTCGACTAAAAGTACGACTCCTCCAAGCCGAAGTCGTGGAGACCCTATT
CTACGGGTGTGTCACATGTAATCTGAAGCCAGCGGAGTACCGCAAGCTTC
GGTCAGCCCACCACTTCTTCCTCCTTCGCTGCATCGGATGGAAAAGAGGG
AGAGAACAGACCGACCCCTCTCTTACGCCAAAGCCCTGATCACCGCGGGT
TGCAACGAGAGCGTTGAGGCCACCGTGCGCAAGCGGCGACTGTGCTTCGC
AGGATTCGTTGCGCGCATGAGAGACGAGAGACTCCCGAAAATTGCTCTTT
TGAGAGAATTGCAGGGGGGAGCGAGGTATCTGGGGGGGCAAGAGTTTGAC
TGGCTGAGGCGAATGCAGGAGGACCTCGAAGCGTTCGACATCGTGGTCGA
CAAAAAAGAGGGGCGGGAGGCAAGTGCCAAGAGAGCTGACGAGTGGTACG
ACAGGATCGACGAGGGTGCGCGGCGGTTCACGGACGAGTGGCTCAAGAAA
GAGGGAGGCTTATCAGAGACACGTCGACGGAAAAGGGAGAGGGACGCGGC
TGAGGGGCAGGCCTTGGCCAACAGAGGGAGAACGGATGGCGGGGATAAAC
GAGAGGAGGGGTACGGGGGGGCACAAGGGCAGCGGGGTAGTGGGGTTGGA
GTTGCACAGCACAAGAAGAAGCAGTCCAATGCCAAGCTACGGGGTGGCCG
GAGTGGAAAACCTGTAGGGCGGAGTGGTGGTGTAGCTGCTGCCAAAGATG
TGGGGCAGAAACAACTGGGGACGGTGGTGCCAAGTAAACTTAAGATTGGC
AACTAGATCAAATAGAATCTTTTGATTTCCCATCTGAATTAAAGTGAAAG
TTTTAAGATAAATATTTAAGATCTTTTCTACACAATTCATATTAATAAAG
TAGCAGGAGGCATGAGTGCGACTGAGGAGAGCAAGCGTGAACAGGCAGAC
CTCGTGGCAAGACATGTTTGCGATTGATTGCATGCCTTTTATTTTATTTT
TATCACCTCCCCCCCCCCCCCCGACTTCCGGTACTTCCGGTCTTCTTTTC
CCTTTTCGTTCCCCTGCTTCCTCTTTGTTCGGCGGCGGCCTGTTTGTTGT
GTTTGTGTACGAGTGCACTCCCTCAGTCTTTGTGCCCTCCCTGTATCTTC
TTCTTTTTTATTTTATTTTTTGTCTTTCGTCTGTTGATCATGTAGTTACT
GCACCATCGCCCTGGTTTGCGTTTGCCTTGGTCTGTCATGGTCCTGGGCC
CTGGTTCGATGTACGAAGTACTTCAAAGTATATGGTTATGGTTGAGGTTT
GTCTTGGTTATTTTTTGTTTGTCGGACTGTTTCCAATTTTTGTTTTTCTT
TCGAGCCTGTTATTTTTTATTCTGTATTTGTTTGGTATTCTGGCTACCAC
AGATGGTACCCCAACGGTACCATGTCTGATTTGACTGAGGGTGATCATAG
TCCATATATTTTATTTTTTATGTTTCCTCCTAGCACGATATGTGCCTGGT
TTGTGACCAGGGGCTAGACTGCGGCGGTTGTGAGCTAATGAGAGAATCAA
CAACAACAACAACTTATCCACAAATTCCATGTGAAATATACCGGCGCATG
CTGATCGGGCTACGGGGGTAAGTACAAAGCATCGGCGGGGCGTGAGTGAT
CAATTTCACTCACGAAGAAATATGGTGGCGGGGATGTGGGTGCAACCTAC
GCCACCCACGGTTCAAGGCGTCGAACGTGCCGGAGCACGAGATTGTCGCG
CGTTAACAGGCCCGCTGCTATGTTCCGCCTCCAATCATTTGCTGACCCGG
CCCCTCTGCGGTACCCTGCCACACACACACACACCCTGTGCACGATCATC
GGATTCATCGAATATATACCAGGTGGTACTTCGGTTTCCTATGTCCTCGC
CAGCCGACTCCGGTGCCGACATCCAAGGGGTGACGAGGGCCGAGTTCGAG
CTGCAGGTGCAAGCGGGAGAGAACGAGCGCTCTCACCTGTCGGCGGAGGT
GGCGGACCTCCAGAACGCGCTCGAGGCTAAGCTGGCCACGGTCCCCACCA
CTCTCCAGCAGGTGCAGCAGCCGCGACAGGGCGAGGCCCACGCCGGACCC
CACGCCGGAAGGGGGGGCAGGCGCACCAGCGATGCTAGCGGGCTGCGCGT
TCGGGGGCGCCCCGCTATCTCACGGGGGCATGGCGGGGTTCGGCCTGGCG
GGCCATAGCATCGCCTTCGCCCCCCCCCCCCCCCGCTCACGGGATGGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig70:368844..372243+

>mRNA_P-littoralis_Contig70.73.1 ID=mRNA_P-littoralis_Contig70.73.1|Name=mRNA_P-littoralis_Contig70.73.1|organism=Pylaiella littoralis U1_48|type=CDS|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig70:368844..372243+ (Pylaiella littoralis U1_48)
ATGGTACCATCGACGAGGGAAAGGGATTACTGTCCCCTTTCTCGTGTCGT
TTTTCAGCCGTTCAAGGGCCATCGGCGCGAGGCTACGACGTGGGAGCGGC
CGGACACCATCCAGCCGCGAGTCAGACCTACTGCGCCACACTCGGTGGTA
CTTCGGTTTCCTATGTCCTCGCCAGCCGACTCCGGTGCCGACATCCAAGG
GGTGACGAGGGCCGAGTTCGAGCTGCAGGTGCAAGCGGGAGAGAACGAGC
GCTCTCACCTGTCGGCGGAGGTGGCGGACCTCCAGAACGCGCTCGAGGCT
AAGCTGGCCACGGTCCCCACCACTCTCCAGCAGGTGCAGCAGCCGCGACA
GGGCGAGGCCCACGCCGGACCCCACGCCGGAAGGGGGGGCAGGCGCACCA
GCGATGCTAGCGGGCTGCGCGTTCGGGGGCGCCCCGCTATCTCACGGGGG
CATGGCGGGGTTCGGCCTGGCGGGCCATAG
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