mRNA_P-littoralis_Contig70.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig70.35.1
Unique NamemRNA_P-littoralis_Contig70.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig70.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig70contigP-littoralis_Contig70:200952..205302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FUD5
PFAMsAnk,Ank_2,Ank_3,Ank_4
Model size1307
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000101
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size1305
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791461.3492436-CDS-P-littoralis_Contig70:200951..2013421680791461.3492436-CDS-P-littoralis_Contig70:200951..201342Pylaiella littoralis U1_48CDSP-littoralis_Contig70 200952..201342 +
1680791461.362414-CDS-P-littoralis_Contig70:204387..2053011680791461.362414-CDS-P-littoralis_Contig70:204387..205301Pylaiella littoralis U1_48CDSP-littoralis_Contig70 204388..205301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig70.35.1prot_P-littoralis_Contig70.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig70 200952..205301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig70.35.1

>prot_P-littoralis_Contig70.35.1 ID=prot_P-littoralis_Contig70.35.1|Name=mRNA_P-littoralis_Contig70.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=435bp
GDKKEEEEEEEEEEEKYRDDEEAFDFFGTAAVSDKPSAANPVTSPRTAPT
DRSEEEQGAERERTPGKGTETSSETGVEVMGMGMVMVMGMGMGMGARSKV
KSIGDLASLAAAKEQEGGRFLDCGKRRDYREVDPAATATTTPLPTNPSLY
PASGLSGGCAGIAYPRPRFTPSATNSGRDGAMPSESRGGLDPATVGGGGG
RGGVGVESLGWSPGVVVGVPKPPAATPLPPESSGASSALPPLVPTTAVGG
CDDETNIAASDTAVAGEEGAVVEERGVVPPTVTTATASRVPMATIPADED
DGSAFDVSGEASVVVATGKDVGPPAVAKDGSPRGAAALGHPPPSIFPQSG
HSSSTIAPQPATPSSFSPPSGWPASPIVNGSTSSGRGRRRGRDYGPGIPI
TDVASWTSFGEEGGGGTVFGYHAEGAGGRGGYEAG
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mRNA from alignment at P-littoralis_Contig70:200952..205302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig70.35.1 ID=mRNA_P-littoralis_Contig70.35.1|Name=mRNA_P-littoralis_Contig70.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4351bp|location=Sequence derived from alignment at P-littoralis_Contig70:200952..205302+ (Pylaiella littoralis U1_48)
GGTGACAAAAAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGAAATA
TCGCGACGACGAGGAGGCTTTCGATTTTTTCGGGACTGCCGCCGTTTCGG
ATAAACCATCGGCGGCGAATCCGGTCACATCTCCAAGAACAGCGCCCACG
GACAGGAGCGAAGAGGAACAAGGGGCGGAGCGCGAACGAACGCCCGGAAA
AGGTACTGAAACGTCGTCGGAAACGGGAGTGGAGGTGATGGGAATGGGGA
TGGTGATGGTGATGGGGATGGGGATGGGGATGGGCGCGAGATCAAAGGTG
AAGAGCATCGGCGACCTTGCGTCACTGGCCGCGGCGAAAGAGCAGGAGGG
TGGACGGTTTCTGGACTGTGGAAAGCGAAGAGACTACAGGGGTGAGCGGG
TCTCGCCGTTTTTTGTGGATCGCATCGCATAAGGTTGGGCTCCGCTGCTC
CTGTTGTTGCTAGTGTTTCTGCTAGTGTTTCTGCTGTTCTTGAGAGGCGA
TGTTGAGATCTGATTTTGATTGCTGGTGGTGTCTCTGCTGTTCTTGAGGG
GCGATGTCGATCGAATTGATCTCTGGCCGTTTTATTGTTTTATTGCTGTT
GCTCTCTCTCTCTCTTTGTTTTTTTGGTCAAGATTCGACAAGTCCAATCA
ATGCCAACAACTGCTACTAGACAAATTGCAAACTCGAGAACCCTAACTCT
AAGCACGATATTTGGCTCTTATCCGCCTAAATTGGCGAAACAGGGCTATA
TCGCGCTTTAGCGAGAATGACAGAGCGGGTTTTTTCTCCCGCTTCGGCAT
TTAATCGAAGCAGGATTCGGGATAAATGAAGCAGCATTTGAGGATCTTCC
AAGTTGGAGAAAATCCGCTCGATCGAGCAGGAGGGCTTTCCTTTATCAAA
TCTTGATCAAGCGGGGCTTCCGTGGAAGGTCGTCGGGGGGGGGGCTCCTT
CCTCACGGTTCACCACCTCAAATGGCAAATGACAAAAACACGTAAATGAG
GGAAATCACAGACCATTGCTGTACAGGCAGGCGCCCCATTTCATGGCAGA
CGTCTATCTCCAGAAAGTTTGTGACACCCCTGAATACTTTATGCTGTGCA
AGGCCAACGTCGAGAAGCTTCCGAAGGCTTGTGTATACTCTGGTAGCCAA
CCGCCGCGAGCTCAGAGCCAGTCAGGCAAAGAGCGCAGGAGCAGAATACG
TCATGTTGTGTCATTTGTTTGAAACGAGGTTGGTCGTGGTACAGCGGGTA
CAGTAGCCTGGCACACAAAGAAGTATTATATTTGTCCTTGCTTCAAAACA
AATACTTCACAACGGTTTTTGGAGCCAATACATCGAGGACAGGCACTAAC
TCGAGCTCCGAAGAAGCAGTGTAAGTAGGTCTGTCGGCACATCTGCTTGG
TACCGTCTGAATCAGCAGAAAAACCGCAGGACGTGTGTTTGGCCGAGCCA
TGCATGGATGAGTGTGGGATGCTGTTGTTTTTGAGAGGCAGCTTGATTCT
TGAATCTCAGCCTGAAAACAACATGAATCACACACCAGTTGTATTCTCGC
TTCAGAATACTTCGAAGCACATACAGAACTCAACGGCGTTTCTCTGGAGC
AATATGCAATGAGGACAGACACAAACGCGAGCTGCCACAAGGAAGCGCAA
GGAAAACTCTTACTCCACGTGCTCATCATCGTAGCAGTAGCTCCGCGGCG
ACGGGAGGTAAACAGCAGCACCGGTAAAGCATGGTACGTGGAACAAATGT
CGAATGTTGTGTTGTGTGTTCTCATGTCCTCTGGCAGAGTCTCTTCGTGA
TGTTGTTTCTTGTGCGAGTACTTCTACTGACGTCAAACCCAAACCTTTCG
ATCTTCCGAGTGTGAATAACTGTCGCTCGTTCCCGCTTTATCCGGCCAAA
ATAAAGCAGGGGTCGAAAGAGGCGAATCAAAAATAAAAATAAAATATATT
TTGTCGATCATGCGGGATCTCGAGTTTGCAATTTGTCTACTGCTAATCTT
GCGCGTGTTGTTGTTCATATCTATTTGCGGTTTCGGCGTTCTGGCCCTCG
CCCATGCGTCGCTCGTTCCCAGGCACATGTCGTACGTACGACCTACCAAG
CAAGTGTCACTACTGTGAAGCGGTGGTGTGACCTCTAGCTTGGTAGGCGC
AGGAGGGGGGGGGGCGACGCCCTCCTTATCGAAGACATCGGCAGAGATAC
CGATTGACCCGGAAAGCTCTAGCTGTGGTGTGGATAACAAACGCGAAATT
CTGTCGGCAGCCCCTCCCGCCACGTTATCGGGACACGTGAAAAACGATTC
CATCCGTTCGTGAACATTGGGAGCCATACGGTACATCATTGATCTGCACC
AGCAAGTCGATGACTCTTTCTCTCTGTGTATGCAAACAGCAGTACTCCGT
TTCCATAAAAAAATACCATGTGTAAATTTGCATGTGAGCAACAACTTGAC
TCAGGCCTGCGATTTCATGAAAAACCACTTCGCAAGACAAGAACTTCATC
GCCAGACACAAATCGAACCTCTCTCTCTCCATATCTATTTATATCTCCCC
CCTCTCTATCTCTCTCTATCGGTCCAACTCCCTCTCCCTCCCTCGATCTC
CCTACATTTTATCCATTTTTCTCTCGAGCACAACCCAAAGCAGAAATGCC
GGAAACAATTACAGCAAGCCAGGGTCAGCCCGACCCTAATAACACGAAAG
AACGTCAAACCTGAACCGCCAGGAGCGAATGAGAGTTCGTCGCTGGAGTC
CGCCATCGGAGTCAAAGGCGATAATGGCGAAGCTAGCCGCCCCCAGAGTT
CATGAATCATGTCTTGAGTCCACGCAGTGGTGGTTGCCGGCGCTTTGACC
TTGGGAAAGAAATCAAGGCTGAAAAGGCGGTTTGCTTCGCCATTCTCGCC
TCTGACGCCGATGACGAACTCTGACAGCCATCTCTCTACCGCGCGTGGCG
TTTCAGCTTTGACCTTTTGTTTTTCCTCGAGAAATTGGAGTCTGGGCCGG
CCGCAAGCTTTGTGCTTTTTACTTTTTACCGTACGGCACCGGCTTCTGGC
TTGTGCTGGAGAGCGACAGCGGGAGGTTCAATTTTATGTTTGACATGGTT
GGCCACTGGGGACTCGCTTCTTGTTGTGCCGTGTTTTTGATGTGTGTGTT
CGTTTCTGGCCAAAGTTGCTGGCCACCCTTGAGGCGTCCTCCGTCTATGT
TTCTCGCTTATCTTGGCAATTCCCGATACACACCACGCCTCCCCCGTCCG
GAACAGGAGCAGTCTCGATACGGGTAGAGGATGAGGATAGAGGATAGAAG
ATATGTCTGTTATCTCTCATGTCGTTTCTGCGAACGACCTCTGACATCGA
GTCCTCACTCACGGCAAGTACCTTTACCCCCCCCGTTACACCGGTGTTTT
TTTATTGTTTGTTCGTTTATCGAAACAACCAACCAGAGGTCGACCCGGCC
GCCACCGCAACGACAACGCCGCTGCCGACAAACCCGAGCTTGTATCCTGC
GTCCGGGCTGAGTGGAGGCTGTGCGGGAATCGCTTACCCTCGACCGCGTT
TCACTCCATCCGCCACCAATAGCGGACGTGACGGTGCAATGCCCTCGGAG
AGCCGCGGGGGGTTAGATCCAGCAACGGTCGGGGGAGGAGGAGGAAGAGG
TGGGGTGGGTGTGGAGAGTCTTGGTTGGTCGCCGGGGGTGGTTGTGGGAG
TGCCGAAGCCCCCCGCTGCTACCCCCCTCCCTCCTGAATCCTCCGGTGCG
TCTTCTGCGTTGCCACCGCTCGTTCCGACGACGGCTGTTGGTGGTTGTGA
TGATGAAACCAATATCGCGGCGAGTGACACTGCTGTTGCAGGGGAAGAGG
GGGCGGTTGTGGAGGAGAGGGGGGTGGTGCCGCCAACGGTGACGACGGCG
ACGGCGAGCCGTGTCCCCATGGCTACAATTCCGGCCGATGAGGATGATGG
AAGCGCTTTTGATGTCAGCGGAGAGGCGAGTGTTGTTGTGGCGACTGGTA
AAGACGTAGGACCTCCGGCGGTTGCGAAAGACGGCTCGCCGCGCGGGGCG
GCAGCGTTGGGGCACCCTCCTCCGAGTATTTTCCCGCAGTCGGGCCATTC
GTCGTCAACCATCGCTCCGCAACCCGCCACCCCTTCCTCCTTCTCCCCGC
CCTCCGGATGGCCCGCGTCGCCCATTGTCAACGGTAGCACGAGCAGTGGT
CGCGGTCGGCGGCGCGGCAGAGACTACGGCCCCGGCATTCCCATCACTGA
CGTCGCGTCGTGGACGTCCTTCGGGGAGGAAGGCGGGGGGGGCACCGTCT
TCGGGTATCACGCGGAAGGGGCGGGGGGAAGGGGAGGTTACGAGGCAGGG
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig70:200952..205302+

>mRNA_P-littoralis_Contig70.35.1 ID=mRNA_P-littoralis_Contig70.35.1|Name=mRNA_P-littoralis_Contig70.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1305bp|location=Sequence derived from alignment at P-littoralis_Contig70:200952..205302+ (Pylaiella littoralis U1_48)
GGTGACAAAAAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGAAATA
TCGCGACGACGAGGAGGCTTTCGATTTTTTCGGGACTGCCGCCGTTTCGG
ATAAACCATCGGCGGCGAATCCGGTCACATCTCCAAGAACAGCGCCCACG
GACAGGAGCGAAGAGGAACAAGGGGCGGAGCGCGAACGAACGCCCGGAAA
AGGTACTGAAACGTCGTCGGAAACGGGAGTGGAGGTGATGGGAATGGGGA
TGGTGATGGTGATGGGGATGGGGATGGGGATGGGCGCGAGATCAAAGGTG
AAGAGCATCGGCGACCTTGCGTCACTGGCCGCGGCGAAAGAGCAGGAGGG
TGGACGGTTTCTGGACTGTGGAAAGCGAAGAGACTACAGGGAGGTCGACC
CGGCCGCCACCGCAACGACAACGCCGCTGCCGACAAACCCGAGCTTGTAT
CCTGCGTCCGGGCTGAGTGGAGGCTGTGCGGGAATCGCTTACCCTCGACC
GCGTTTCACTCCATCCGCCACCAATAGCGGACGTGACGGTGCAATGCCCT
CGGAGAGCCGCGGGGGGTTAGATCCAGCAACGGTCGGGGGAGGAGGAGGA
AGAGGTGGGGTGGGTGTGGAGAGTCTTGGTTGGTCGCCGGGGGTGGTTGT
GGGAGTGCCGAAGCCCCCCGCTGCTACCCCCCTCCCTCCTGAATCCTCCG
GTGCGTCTTCTGCGTTGCCACCGCTCGTTCCGACGACGGCTGTTGGTGGT
TGTGATGATGAAACCAATATCGCGGCGAGTGACACTGCTGTTGCAGGGGA
AGAGGGGGCGGTTGTGGAGGAGAGGGGGGTGGTGCCGCCAACGGTGACGA
CGGCGACGGCGAGCCGTGTCCCCATGGCTACAATTCCGGCCGATGAGGAT
GATGGAAGCGCTTTTGATGTCAGCGGAGAGGCGAGTGTTGTTGTGGCGAC
TGGTAAAGACGTAGGACCTCCGGCGGTTGCGAAAGACGGCTCGCCGCGCG
GGGCGGCAGCGTTGGGGCACCCTCCTCCGAGTATTTTCCCGCAGTCGGGC
CATTCGTCGTCAACCATCGCTCCGCAACCCGCCACCCCTTCCTCCTTCTC
CCCGCCCTCCGGATGGCCCGCGTCGCCCATTGTCAACGGTAGCACGAGCA
GTGGTCGCGGTCGGCGGCGCGGCAGAGACTACGGCCCCGGCATTCCCATC
ACTGACGTCGCGTCGTGGACGTCCTTCGGGGAGGAAGGCGGGGGGGGCAC
CGTCTTCGGGTATCACGCGGAAGGGGCGGGGGGAAGGGGAGGTTACGAGG
CAGGG
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