mRNA_P-littoralis_Contig118.111.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig118.111.1
Unique NamemRNA_P-littoralis_Contig118.111.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig118.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig118contigP-littoralis_Contig118:459315..460345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size953
Hectar predicted targeting categoryother localisation
Exons3
Cds size768
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789492.896256-UTR-P-littoralis_Contig118:459314..4594911680789492.896256-UTR-P-littoralis_Contig118:459314..459491Pylaiella littoralis U1_48UTRP-littoralis_Contig118 459315..459491 -
1680789492.9380503-UTR-P-littoralis_Contig118:460337..4603451680789492.9380503-UTR-P-littoralis_Contig118:460337..460345Pylaiella littoralis U1_48UTRP-littoralis_Contig118 460338..460345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789492.9061818-CDS-P-littoralis_Contig118:459491..4595521680789492.9061818-CDS-P-littoralis_Contig118:459491..459552Pylaiella littoralis U1_48CDSP-littoralis_Contig118 459492..459552 -
1680789492.921088-CDS-P-littoralis_Contig118:459620..4600481680789492.921088-CDS-P-littoralis_Contig118:459620..460048Pylaiella littoralis U1_48CDSP-littoralis_Contig118 459621..460048 -
1680789492.9298475-CDS-P-littoralis_Contig118:460058..4603371680789492.9298475-CDS-P-littoralis_Contig118:460058..460337Pylaiella littoralis U1_48CDSP-littoralis_Contig118 460059..460337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig118.111.1prot_P-littoralis_Contig118.111.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig118 459492..460337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig118.111.1

>prot_P-littoralis_Contig118.111.1 ID=prot_P-littoralis_Contig118.111.1|Name=mRNA_P-littoralis_Contig118.111.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=256bp
MSQTGRSLQRRQSSDTFIRLLSGRGFTQDRYKAGKVKPKSTVLNTTHYKK
EVASTHPPDNIPINTGTLSTPPQTLTRRDVDAANARSRLRNFALKNPLDI
YSRVMTILAKYPVVNGPLSTVLPPPPPKLKHIYHLYHTFIMPVQVFFKAQ
QPCPARKHDRPLLHSCDQRGREPLLPRATQRRDRPCTFYWCGRTRTTISH
MTPMNYPRSCGGSTELHYKRKKRKAKKRGGASKHASYQGASEAKQNTEKQ
ATTSL*
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mRNA from alignment at P-littoralis_Contig118:459315..460345-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig118.111.1 ID=mRNA_P-littoralis_Contig118.111.1|Name=mRNA_P-littoralis_Contig118.111.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1031bp|location=Sequence derived from alignment at P-littoralis_Contig118:459315..460345- (Pylaiella littoralis U1_48)
TGCCGTACATGTCACAGACGGGTCGTTCTTTACAGAGACGTCAATCATCG
GATACATTTATTCGGCTGCTGTCTGGACGAGGTTTTACACAAGATCGATA
CAAGGCTGGCAAGGTAAAACCAAAATCGACCGTTTTAAACACCACGCACT
ACAAAAAAGAAGTCGCCTCAACGCACCCACCTGATAACATCCCCATCAAC
ACGGGGACACTCTCTACCCCACCCCAGACCCTTACACGTCGTGATGTAGA
TGCAGCCAATGCGCGCTCGAGGTTGCGTAACTTCGCAGCCAATCAAGTTA
AAAAATCCATTAGATATTTACTCAAGAGTCATGACGATCCTAGCCAAGTA
CCCCGTGGTAAATGGCCCTTTATCTACCGTGCTCCCCCCTCCCCCACCGA
AGCTCAAACATATATACCATCTGTATCATACGTTTATCATGCCAGTCCAA
GTATTTTTCAAGGCGCAACAACCGTGCCCTGCACGCAAACACGATAGACC
TCTTCTTCATAGCTGCGACCAAAGAGGCCGCGAGCCACTCCTCCCTCGCG
CGACGCAACGGCGTGACAGGCCCTGTACGTTCTACTGGTGTGGTAGAACC
AGGACGACGATAAGTCACATGACACCCATGAACTATCCACGGTCCTGCGG
TGGATCAACAGAACTGCATTATAAGCGTAAAAAACGAAAGGCAAAAAAAA
GGGGGGGGGCAAGCAAGCACGCGAGGCAAAAGGGACATAACACACCGGGC
ACAGTACACTCACACGCAGAAAATGACCATAAAAAAAAACGAGTTATCAA
GGAGCAAGCGAAGCGAAGCAAAATACGGAAAAGCAAGCAACAACCTCTCT
TTAAAGTCGCGCAAATATGACATAAAGTGGAGGCAAAGGTATCTACTACT
GTTGCAACACAACTGAACTGCCAAGATTCCGGGAGGTACGCTATCATAAC
CCCAAGCATTTTACCTGACTACTGAGTGGTTGGTCAGCAATCTATCTCTG
TCACGGTGCACCCATTCTCGTCATCACCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig118:459315..460345-

>mRNA_P-littoralis_Contig118.111.1 ID=mRNA_P-littoralis_Contig118.111.1|Name=mRNA_P-littoralis_Contig118.111.1|organism=Pylaiella littoralis U1_48|type=CDS|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig118:459315..460345- (Pylaiella littoralis U1_48)
ATGTCACAGACGGGTCGTTCTTTACAGAGACGTCAATCATCGGATACATT
TATTCGGCTGCTGTCTGGACGAGGTTTTACACAAGATCGATACAAGGCTG
GCAAGGTAAAACCAAAATCGACCGTTTTAAACACCACGCACTACAAAAAA
GAAGTCGCCTCAACGCACCCACCTGATAACATCCCCATCAACACGGGGAC
ACTCTCTACCCCACCCCAGACCCTTACACGTCGTGATGTAGATGCAGCCA
ATGCGCGCTCGAGGTTGCGTAACTTCGCATTAAAAAATCCATTAGATATT
TACTCAAGAGTCATGACGATCCTAGCCAAGTACCCCGTGGTAAATGGCCC
TTTATCTACCGTGCTCCCCCCTCCCCCACCGAAGCTCAAACATATATACC
ATCTGTATCATACGTTTATCATGCCAGTCCAAGTATTTTTCAAGGCGCAA
CAACCGTGCCCTGCACGCAAACACGATAGACCTCTTCTTCATAGCTGCGA
CCAAAGAGGCCGCGAGCCACTCCTCCCTCGCGCGACGCAACGGCGTGACA
GGCCCTGTACGTTCTACTGGTGTGGTAGAACCAGGACGACGATAAGTCAC
ATGACACCCATGAACTATCCACGGTCCTGCGGTGGATCAACAGAACTGCA
TTATAAGCGTAAAAAACGAAAGGCAAAAAAAAGGGGGGGGGCAAGCAAGC
ACGCGAGTTATCAAGGAGCAAGCGAAGCGAAGCAAAATACGGAAAAGCAA
GCAACAACCTCTCTTTAA
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