mRNA_P-littoralis_Contig7.311.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.311.1
Unique NamemRNA_P-littoralis_Contig7.311.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig7.311.1 vs. uniprot
Match: D7FLF7_ECTSI (Probable Spc3 homolog, subunit of Signal Peptidase Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF7_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 2.660e-59
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHQGFPDVRKLGVSKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYKTETNPVNQAS 297
            MHTAWVR+NAVVFFGLTVLL LSVLTALSTYLHQGFPDVRKLGVSKFRTFR SEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEY+T TNPVNQAS
Sbjct:    1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQAS 99
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BLAST of mRNA_P-littoralis_Contig7.311.1 vs. uniprot
Match: A0A835YJ42_9STRA (Signal peptidase 22kDa subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ42_9STRA)

HSP 1 Score: 136 bits (343), Expect = 6.920e-39
Identity = 62/97 (63.92%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHQGFPDVRKLGVSKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYKTETNPVNQ 291
            M+T WVRLNAVVFFGLTVLLGL+++TA STYLH+G P V+ L ++K ++FR+    DR ++N D++ADLAPAFNWN+KQ+F FVVAE+ T+TNP+NQ
Sbjct:    1 MNTVWVRLNAVVFFGLTVLLGLALMTATSTYLHEGHPTVKTLRLNKIKSFRSQSKVDRAIINFDLEADLAPAFNWNIKQIFVFVVAEFATKTNPLNQ 97
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BLAST of mRNA_P-littoralis_Contig7.311.1 vs. uniprot
Match: A0A6V1NT77_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NT77_HETAK)

HSP 1 Score: 131 bits (330), Expect = 7.270e-37
Identity = 61/97 (62.89%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHQGFPDVRKLGVSKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYKTETNPVNQ 291
            M+T WVR+NAVVFFGLTVLL L+++ A STYLH+G P+++ LGV+  R+ ++  G DR L++ D+DADL PAFNWN+KQLF FVVAEY TE NP+NQ
Sbjct:    4 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKNPLNQ 100
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BLAST of mRNA_P-littoralis_Contig7.311.1 vs. uniprot
Match: A0A7S2XZ74_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ74_9STRA)

HSP 1 Score: 124 bits (310), Expect = 6.770e-34
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHQGFPDVRKLGVSKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYKTETNPVNQ 291
            M+T WVRLNAVVFFG TVLL L+ + + ST+LH+G P ++ LG++  R+ R  +G DR+L++ D+DADL+ AFNWN+KQLF FVVAEY T+TNP NQ
Sbjct:    1 MNTIWVRLNAVVFFGFTVLLCLACMCSFSTFLHKGEPHIKYLGLNTIRSMRAQKGGDRVLISFDIDADLSGAFNWNIKQLFVFVVAEYATKTNPFNQ 97
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BLAST of mRNA_P-littoralis_Contig7.311.1 vs. uniprot
Match: A0A7S2SN40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN40_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.210e-32
Identity = 59/97 (60.82%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHQGFPDVRKLGVSKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYKTETNPVNQ 291
            MHT WVRLNAVVFFGLTV++ L+VLT  ST  H+G+P V  L ++   T RN    D  +L+ D+ ADL+PAFNWN+KQLF FVVAEY+T+TNP+NQ
Sbjct:    1 MHTVWVRLNAVVFFGLTVIVVLAVLTWFSTVTHRGYPTVDTLQLNSIGTLRNHGERDIAILSFDLHADLSPAFNWNIKQLFVFVVAEYRTKTNPLNQ 97
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BLAST of mRNA_P-littoralis_Contig7.311.1 vs. uniprot
Match: A0A7S4J3F9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3F9_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.840e-32
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHQGF--PDVRKLGVSKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYKTETNPVNQ 291
            MHT WVRLNAVVFFGLTVLLGLS+L ALS   H     PDV++L +   R+ ++  G DR LL+ D+D DL PAF+WN+KQLF +VVA Y+++TNP NQ
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLGLSILAALSKSGHSNRYRPDVKRLELKTLRSLKSHGGVDRALLSFDIDVDLRPAFHWNIKQLFVYVVASYESDTNPNNQ 99
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BLAST of mRNA_P-littoralis_Contig7.311.1 vs. uniprot
Match: A0A7S2XM83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM83_9STRA)

HSP 1 Score: 116 bits (290), Expect = 9.470e-31
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLH--QGFPDVRKLGVSKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYKTETNPVNQ 291
            MHT WVRLNAVVFFGLTVLLGLSVL A+S   H  +  P V KL +++ R+ ++  G DR LL+ D+ AD+ PAF+WN+KQLF +VVA Y+T+TNP NQ
Sbjct:    5 MHTVWVRLNAVVFFGLTVLLGLSVLAAISAIGHSTRHKPVVSKLSLNQLRSLKSHGGVDRALLSFDLHADMRPAFHWNIKQLFVYVVASYETDTNPNNQ 103
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BLAST of mRNA_P-littoralis_Contig7.311.1 vs. uniprot
Match: B8CCG8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCG8_THAPS)

HSP 1 Score: 114 bits (286), Expect = 3.150e-30
Identity = 58/99 (58.59%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLH--QGFPDVRKLGVSKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYKTETNPVNQ 291
            MHT WVRLNAVVFFGLTVLL LS+L ALS   H  +  P + KL ++  R+ +N  G DR LL+ D+ AD+ PAF+WN+KQ+F +VVA YKT+TNP NQ
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLCLSILAALSKIGHTRRYQPKIHKLALNNLRSVKNHGGVDRALLSFDLHADMNPAFHWNIKQIFVYVVATYKTDTNPKNQ 99
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BLAST of mRNA_P-littoralis_Contig7.311.1 vs. uniprot
Match: A0A7R9UGA1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGA1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.240e-30
Identity = 60/98 (61.22%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYL-HQGFPDVRKLGVSKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYKTETNPVNQ 291
            MHT WVRLNAVVFF  TVLL LS L A+ T L H G P V  L + + R+ R     DR +L  D+DADL  AFNWNVKQLF FVVAEY T+TNP+NQ
Sbjct:   18 MHTIWVRLNAVVFFSFTVLLALSTLAAVQTMLFHDGQPVVHTLRLRELRSLRKHANIDRAMLTFDIDADLRGAFNWNVKQLFVFVVAEYATQTNPLNQ 115
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BLAST of mRNA_P-littoralis_Contig7.311.1 vs. uniprot
Match: A0A7S2IIZ8_9STRA (Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2IIZ8_9STRA)

HSP 1 Score: 111 bits (278), Expect = 9.320e-29
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHQGF--PDVRKLGVSKFRTFRNSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYKTETNPVNQ 291
            MHT WVRLNAVVFFGLTVLLGLS+  A+S + H     P V KL ++K R+ ++  G DR LL+ D+  DL PAF+WN+KQLF +V+A Y+T+ NP N+
Sbjct:   24 MHTVWVRLNAVVFFGLTVLLGLSIAAAISKWGHASRHKPVVEKLKLNKLRSLKSHGGVDRALLSFDLHVDLTPAFHWNIKQLFVYVIATYETDKNPKNE 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF7_ECTSI2.660e-5994.95Probable Spc3 homolog, subunit of Signal Peptidase... [more]
A0A835YJ42_9STRA6.920e-3963.92Signal peptidase 22kDa subunit n=1 Tax=Tribonema m... [more]
A0A6V1NT77_HETAK7.270e-3762.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZ74_9STRA6.770e-3459.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SN40_9STRA1.210e-3260.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4J3F9_9STRA6.840e-3259.60Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2XM83_9STRA9.470e-3159.60Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
B8CCG8_THAPS3.150e-3058.59Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7R9UGA1_9STRA3.240e-3061.22Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2IIZ8_9STRA9.320e-2955.56Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:1213027..1213487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLF7
Preferred nameSPCS3
PFAMsSPC22
Model size306
Max annot lvl2759|Eukaryota
KEGG koko:K12948
KEGG Pathwayko03060,map03060
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0005911,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009506,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0030054,GO:0030154,GO:0030312,GO:0031984,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045444,GO:0046907,GO:0048869,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055044,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
Exons2
Evalue4.37e-60
EggNOG OGsKOG3372@1|root,KOG3372@2759|Eukaryota
Ec32 ortholog descriptionProbable Spc3 homolog, subunit of Signal Peptidase Complex
Ec32 orthologEc-12_007990.1
Descriptionsignal peptide processing
Cds size306
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791460.0881631-CDS-P-littoralis_Contig7:1213026..12132291680791460.0881631-CDS-P-littoralis_Contig7:1213026..1213229Pylaiella littoralis U1_48CDSP-littoralis_Contig7 1213027..1213229 -
1680791460.100703-CDS-P-littoralis_Contig7:1213384..12134871680791460.100703-CDS-P-littoralis_Contig7:1213384..1213487Pylaiella littoralis U1_48CDSP-littoralis_Contig7 1213385..1213487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.311.1prot_P-littoralis_Contig7.311.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 1213027..1213487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.311.1

>prot_P-littoralis_Contig7.311.1 ID=prot_P-littoralis_Contig7.311.1|Name=mRNA_P-littoralis_Contig7.311.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MHTAWVRLNAVVFFGLTVLLGLSVLTALSTYLHQGFPDVRKLGVSKFRTF
RNSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYKTETNPVNQASP
PI
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mRNA from alignment at P-littoralis_Contig7:1213027..1213487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.311.1 ID=mRNA_P-littoralis_Contig7.311.1|Name=mRNA_P-littoralis_Contig7.311.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=461bp|location=Sequence derived from alignment at P-littoralis_Contig7:1213027..1213487- (Pylaiella littoralis U1_48)
ATGCACACGGCGTGGGTTAGGCTTAATGCTGTGGTATTCTTTGGGCTCAC
TGTTCTTTTGGGACTGAGCGTACTCACCGCGCTGAGTACGTATCTCCATC
AAGGTATGGCCAGCAACGACATATCCGACGGTTGTGCGGGTTATCCACCT
TGTGTGTGCAAGTCCTCTCGTGTTAAATACACCGTGGTTGTGCAAGTCCT
CGTCAGCTCGGTGTTACCTGTGACATGACTCGGTGCGCTTAATGCCTTCC
GTGTACAGGTTTCCCGGATGTCAGGAAGCTGGGCGTAAGCAAATTCCGGA
CGTTTCGAAACTCTGAGGGAACAGATCGATTACTTCTGAACATTGATGTA
GACGCGGATCTCGCTCCGGCCTTCAACTGGAATGTGAAGCAGCTCTTCGC
CTTCGTAGTAGCTGAATACAAGACCGAGACAAACCCCGTCAACCAGGCAA
GTCCACCAATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:1213027..1213487-

>mRNA_P-littoralis_Contig7.311.1 ID=mRNA_P-littoralis_Contig7.311.1|Name=mRNA_P-littoralis_Contig7.311.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig7:1213027..1213487- (Pylaiella littoralis U1_48)
ATGCACACGGCGTGGGTTAGGCTTAATGCTGTGGTATTCTTTGGGCTCAC
TGTTCTTTTGGGACTGAGCGTACTCACCGCGCTGAGTACGTATCTCCATC
AAGGTTTCCCGGATGTCAGGAAGCTGGGCGTAAGCAAATTCCGGACGTTT
CGAAACTCTGAGGGAACAGATCGATTACTTCTGAACATTGATGTAGACGC
GGATCTCGCTCCGGCCTTCAACTGGAATGTGAAGCAGCTCTTCGCCTTCG
TAGTAGCTGAATACAAGACCGAGACAAACCCCGTCAACCAGGCAAGTCCA
CCAATT
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