mRNA_P-littoralis_Contig7.259.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.259.1
Unique NamemRNA_P-littoralis_Contig7.259.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig7.259.1 vs. uniprot
Match: A0A6H5K0Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y1_9PHAE)

HSP 1 Score: 560 bits (1442), Expect = 1.170e-193
Identity = 328/505 (64.95%), Postives = 363/505 (71.88%), Query Frame = 1
Query:    1 SYEQGETAPPWSVGWLANSTGTTVKHHIDDEFCGLRGEIPGNQGHNQGHNGQTTKLFVGMAPKSAYEADFRAVFAPFGRLVDIYVIRDRNGFSKGCAFVRYESVKSANDAIEALHDKHIMPGGFRTLVVTIADDRRGPQTATSAASASRRDASGSGDGLSRCLSRPSSFTGSDGGGGASTSSFSTHAGPTLHTAAAPNAAAAAYVPTVAPGG-PSS-LMSRMPYFLYG-SPPHGTYVYYPYIPSSSRQQDTGTSSVGPVVLGTKPHHAFPVSPSAVSNNNRGDPGARGVHEDGQAGNETVRRFGTGGPEEKGRRWAKQFVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTLESKGFGFVSYTKPEEADAAISGMNGFFIGQKRLKVVRKRGQQTVRCPDNSSNSNS-----------SGRVSDPAYAVGDGA-------DGGSG-SGTGSVKGFGNASVAGVSSGERSLLGAGLQGHLDSFTPEGLLGQSMAR 1449
            S+E  ETAP WSVGWL  S  T  + H DD F   R  + G+  H    + Q  KLFVGMAPKSAYE D+RAVF PFG  +DIYVIRDRNGFSKGCAFVRYESV+SA+DAIEALHDK+IMPGGFRTLVVT+ADDRRGPQT+    + +RRDA GSGD L R LSRPSSF GSD   G S  SF    G    T AAP A A A  PT+APG  PSS L+S MPYFL G +PP GTYVYYPY+PSSS Q DTG S V PV +G KPHHAF V   AV NN+R + GARG  EDG  G+ TVR+FGTGGPEE+GRRWAKQ VGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDT ESKGFGFVSY+KP+EA+AAIS MNGFFIGQKRLKVVRKRGQQT RC D+S                SGR  DP YA  DG+        G SG +G+  V G G  +  G  +  RS+ G+G Q  LD FTPEGLLG SM R
Sbjct:   13 SFEHRETAPTWSVGWLPTSP-TMAEQHNDDAFSRPREMLLGDHAHT---DQQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRYESVRSASDAIEALHDKYIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDVLLRSLSRPSSFMGSDSSVGGSIPSFGNLVGQNRSTVAAPQAGATAVAPTIAPGSRPSSGLLSGMPYFLCGGNPPQGTYVYYPYVPSSSVQHDTGLS-VAPVGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQTDRCLDSSXXXXXXXXXXXXXXXXSGRPRDPGYAASDGSCGLARPDRGASGIAGSNVVVGSGVNNGNGDGTSHRSIFGSGSQADLD-FTPEGLLGPSMTR 511          
BLAST of mRNA_P-littoralis_Contig7.259.1 vs. uniprot
Match: D7FV61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV61_ECTSI)

HSP 1 Score: 523 bits (1347), Expect = 9.440e-182
Identity = 283/396 (71.46%), Postives = 308/396 (77.78%), Query Frame = 1
Query:    1 SYEQGETAPPWSVGWLANSTGTTVKHHIDDEFCGLRGEIPGNQGHNQGHNGQTTKLFVGMAPKSAYEADFRAVFAPFGRLVDIYVIRDRNGFSKGCAFVRYESVKSANDAIEALHDKHIMPGGFRTLVVTIADDRRGPQTATSAASASRRDASGSGDGLSRCLSRPSSFTGSDGGGGASTSSFSTHAGPTLHTAAAPNAAAAAYVPTVAPG-GPSS-LMSRMPYFLYG-SPPHGTYVYYPYIPSSSRQQDTGTSSVGPVVLGTKPHHAFPVSPSAVSNNNRGDPGARGVHEDGQAGNETVRRFGTGGPEEKGRRWAKQFVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTLESKGFGFVSYTKPEEADAAISGMNGFFIGQKRL 1179
            SYE  ETAPPWSVGWL  S  T  + H DD F   R  + G+  H    + Q  KLFVGMAPKSAYE D+RAVF PFG  +DIYVIRDRNGFSKGCAFVRYESVKSA+DAIEALHDKHIMPGGFRTLVVT+ADDRRGPQT+    + +RRDA GSGDGL R LSRPSSF GSD GGG +  S     G    T  AP A A A+ PTVAPG GPSS L+S MPYFL G +PP GTYVYYPY+PSSS Q DTG SS  P  +G KPHHAF V   AV NN+R + GARG  EDG  G+ TVR+FGTGGPEE+GRRWAKQ VGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDT ESKGFGFVSY+KP+EA+AAIS MNGFFIGQK L
Sbjct:   10 SYEHRETAPPWSVGWLPTSP-TMAEQHTDDAFSRPRELLLGDHAHT---DQQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFRALSRPSSFMGSDSGGGGTIPSLGNVVGQNRSTVTAPQAGATAFAPTVAPGSGPSSGLLSGMPYFLCGGNPPQGTYVYYPYVPSSSVQHDTG-SSAAPAGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKFL 400          
BLAST of mRNA_P-littoralis_Contig7.259.1 vs. uniprot
Match: D7FV60_ECTSI (Trinucleotide repeat containing 4, isoform CRA_d n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV60_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 1.130e-59
Identity = 160/382 (41.88%), Postives = 195/382 (51.05%), Query Frame = 1
Query:  106 RGEIPGNQGHNQGHNGQTTKLFVGMAPKSAYEADFRAVFAPFGRLVDIYVIRDRNGFSKGCAFVRYESVKSANDAIEALHDKHIMPGGFRTLVVTIADDRRGPQTATSAASASRRDASGSGDGLSRCLSRPSSFTGSDGGGGASTSSFSTHAGPTLHTAAAPNAAAAAYVPTVAPGGPSS--LMSRMPYFLY-------GSPPHGTYVYYPYIPSSSRQQDTGTSSVGPVVLGTKPHHAFPVSPSAVSNNNRGDPGARGVHEDGQAGNETVRRFGTGGPEEKGRRWAKQFVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTLESKGFGFVSYTKPEEADAAISGMNGFFIGQKRLKVVRKRGQQTVRCPD 1224
            RG+ P      +G   Q  KLFVGMAPKSA E + RAVFAP+G L +I+VIR+++G +KGCAFV+Y + +SA DAIEALH+++ M GG R LVV  AD++RG Q A            G   GL     R  S    + GG      +  H G             A Y P   PG P S  +MS MPY +        G+P  G+YVYYPY          G     P   G   +H+ P SPS                                          +   GP GANLF+Y+LP  L+DADLATAFAPFG VLSAKVY DR + ESKGFGFVSY+ P  A+AAI+ MNGF IG KRLKV  KR  Q+   PD
Sbjct:  113 RGQNPLQVRPAEGQAEQENKLFVGMAPKSANEDEIRAVFAPYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIEALHEQYTMQGGPRPLVVKFADNKRGTQAAA-----------GRLGGLIGSPGRHGSGPHPEAGG------WMGHPGA--------GGQGAGY-PYPMPGPPMSPHMMSGMPYGMAYGGGQAPGAPAQGSYVYYPY----------GAPGYPPQPGGPGQYHSGPPSPSRGGGXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXTRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYSLPSHAEAAIAQMNGFQIGSKRLKVQHKRRGQSTDDPD 456          
BLAST of mRNA_P-littoralis_Contig7.259.1 vs. uniprot
Match: A0A7S4QD22_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QD22_9STRA)

HSP 1 Score: 171 bits (433), Expect = 7.260e-43
Identity = 152/424 (35.85%), Postives = 187/424 (44.10%), Query Frame = 1
Query:   82 IDDEFCGLRGEIPGNQGHNQGHNGQTTKLFVGMAPKSAYEADFRAVFAPFGRLVDIYVIRDRNGFSKGCAFVRYESVKSANDAIEALHDKHIMPGGFRTLVVTIADDRRGPQTATSAASASRRDASGSGDGLSRCLSRPSSFTGSDGGGGASTSSFSTHAGPTLHTAAAPNAAAAAYVPTVAPGGPSSLMSRMPY---FLYGSPPH------GTYVYYPYIPSSSRQQDTGTSSVGP---VVLGTKPH--HAFPVS-------------------------PSAVSNNNRGDPGA---------RGVHEDGQAGNETVRRFGTGGPEEKGRRWAKQFVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTLESKGFGFVSYTKPEEADAAISGMNGFFIGQKRLKVVRKRGQQT 1209
            + D++   RG+ P         +    KLFVGM P+   E D R +F+PFG +  IY+IR+ +G  KGCAFV++   +SA  AI  LH ++ M G  R+LVV  AD  +G + A+    A+RR+A                                 +    +H    PN  +  YVP+  PGGP   M   P      Y  PP       GT    P +  S     TG  SVG       G  PH  H  P S                         P   S    G  GA         RG + DGQ  + T  R     P E          GP GANLF+Y+LP  LTDADLATAF PFG V+SAKVY DR T ESKGFGFVSY     A+ AI  MNGF IG KRLKV  KR  +T
Sbjct:  254 LHDKYTFPRGKKPVQVRPASEGSDTEVKLFVGMLPRKTTEKDLREIFSPFGDISAIYLIRNDDGTQKGCAFVKFHQRESAQAAINTLHGQYCMEGMRRSLVVKYAD--KGYRRASRRYQAARREA---------------------------------YENAVMH--GHPNPGSVFYVPS-GPGGPPPQMPGFPPGGPMAYPQPPQAGPHAEGTQGPSPPMGISPPVSGTGQYSVGQPPQYATGAYPHGSHTPPSSQXXXXXXXXXXXXXXXXXAAAPYGMPQGFSGGQAGPGGAHQNKPRFYGRGQNRDGQLPHATTPR-----PRE----------GPAGANLFIYHLPHDLTDADLATAFNPFGNVISAKVYVDRYTGESKGFGFVSYDSVISAEHAIEQMNGFQIGTKRLKVQHKRVTKT 624          
BLAST of mRNA_P-littoralis_Contig7.259.1 vs. uniprot
Match: A0A485KNC1_9STRA (Aste57867_9466 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNC1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 3.130e-41
Identity = 134/355 (37.75%), Postives = 171/355 (48.17%), Query Frame = 1
Query:  154 QTTKLFVGMAPKSAYEADFRAVFAPFGRLVDIYVIRDRN-GFSKGCAFVRYESVKSANDAIEALHDKHIMPGGFRTLVVTIADDRRGP------QTATSAASASRRDASGSGDGLSRCLSRPSSFTGSDGGGGASTSSFSTHAGPTLHTAAAPNAAAAAYVPTVAPGGPSSLMSRMPYFLYGSPPHGTYVYYPYIPSSSRQQDTGTSSVGPVVLGTKPHHAFPVSPSAVSNNNRGDPGARGVHEDGQAGNETVRRFGTGGPEEKGRRWAKQFVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTLESKGFGFVSYTKPEEADAAISGMNGFFIGQKRLKVVRKR 1197
            Q  KLF+GM PK A EAD RAVF   G + +IY++R    G SKGCAF++Y+   +A+ AI+ ++    M  G   LVV  AD RR        Q ATSAA A  +   G+     +       +       GA               AAA N ++   VP  AP  P++ M   PY + G+        YP  P++            PV         FP+ P+A +                                +   R + Q  GP GANLF+Y+LP  LTDADLATAFAPFG V+SAKVY D++T ESKGFGFVSY   + ADAAI+ MNGF IG KRLKV  KR
Sbjct:  120 QEHKLFIGMIPKHADEADIRAVFESHGEIEEIYILRHPGTGQSKGCAFLKYKDRHAASTAIDMINGVVTMDRGTAPLVVKFADSRRQRIQRARNQAATSAA-AYWQMPPGAAIPFPQLQQIQQQYMQQMQAFGAQ--------------AAALNPSSNG-VPPPAPANPAAFMYYNPYGIPGA--------YPSFPAA------------PV--------GFPLDPAAAA-----------------------------AASDSAARASSQLEGPIGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKNTGESKGFGFVSYDSAQAADAAIASMNGFQIGSKRLKVQHKR 401          
BLAST of mRNA_P-littoralis_Contig7.259.1 vs. uniprot
Match: A0A7S1BYN5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYN5_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.550e-40
Identity = 158/415 (38.07%), Postives = 196/415 (47.23%), Query Frame = 1
Query:   37 VGWLANSTGTTVKHHIDDEFCGLRGEIPGNQGHNQGHNG------QTTKLFVGMAPKSAYEADFRAVFAPFGRLVDIYVIRDRNGFSKGCAFVRYESVKSANDAIEALHDKHIMPGGFRTLVVTIADDRRGPQTATSAASASRRDASGSGDGLSRCLSRPSSFTGSDGGGGASTSSFSTHAGPTLHTAAAPNAAAAAYVPTVAPGG-----PSSLMSRMPYFLYGSPPHGTYVYYPYIP------------SSSRQQDTGTSSVGPVVLGTKPHHAFPVSPSAVSNNNRGDPGARGVHEDGQAGNETVRRFGTGGPEEKGRRWAKQFVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTLESKGFGFVSYTKPEEADAAISGMNGFFIGQKRLKVVRKR--GQQ 1206
            V + ++S+   V+  + D+     G  P       G N       Q  KLF+GM  ++A E   R VFA FG + +IY+IR+ +G +KGCAF++Y    SA  AI  L++K +M G  R L+V  AD +           A RR     G+G+S      S   GS G G +  +  S +  P +     PN  A    P   P       P    S    F+Y   P G Y Y P  P             S  QQ  G  S    V    P+HA  V PS  S      PG   V++    G  T  R     P+E          GP GANLF+Y+LP  LTDADLATAFAPFG V+SAKVY D+ T ESKGFGFVSY     ADAAI  MNGF IG KRLKV  KR  GQQ
Sbjct:  172 VTYWSSSSAERVQEVLHDQLTFTNGRKPVQIRPAIGSNSTPTTPEQENKLFIGMTSRNADENAIREVFASFGEIREIYIIRNADGSNKGCAFLKYSQRDSALSAITMLNNKVVMDGASRPLIVKFADTK-----------AQRR---ARGNGMS------SRGLGSPGRGQSGHNPSSPYFIPPVPVY--PNYQAQRAPPIGIPHQYSQYPPQYGQSSSQNFMYV--PTGPYGY-PSAPFNHNQMGNHSGGGSGAQQPGGAPSAFEPV--PNPNHA--VHPSRGSPRTSPAPGK--VYQHRSDGPNTNTR-----PKE----------GPPGANLFIYHLPHDLTDADLATAFAPFGNVISAKVYVDKFTGESKGFGFVSYDVVTSADAAIEQMNGFQIGSKRLKVQHKRVSGQQ 540          
BLAST of mRNA_P-littoralis_Contig7.259.1 vs. uniprot
Match: A0A1W0A7F0_9STRA (CUG-BP-and ETR-3-like factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7F0_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.700e-40
Identity = 134/374 (35.83%), Postives = 169/374 (45.19%), Query Frame = 1
Query:  154 QTTKLFVGMAPKSAYEADFRAVFAPFGRLVDIYVIRD-RNGFSKGCAFVRYESVKSANDAIEALHDKHIMPGGFRTLVVTIADDRRGPQTATSAASASRRDASGSGDGLSRCLSRPSSFTGSDGGGGASTSSFSTHAGPTLHTAAAPNAAAAAYVPTVAPGGP----------SSLMSRMPYF----LYGSPPHG----------TYVYY-PYIPSSSRQQDTGTSSVGPVVLGTKPHHAFPVSPSAVSNNNRGDPGARGVHEDGQAGNETVRRFGTGGPEEKGRRWAKQFVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTLESKGFGFVSYTKPEEADAAISGMNGFFIGQKRLKVVRKR 1197
            Q  KLF+GM PK A EA  R VFAP G + +IY++R    G SKGCAF++Y+   SA+ AIEA +  + M  G   LVV  AD RR                      + R  ++ ++                               AAAAY   + PGG              M +M  F    L G    G          T++YY PY  +++   ++   + GP          FP+ P A      G  GAR                            A Q  GP GANLF+Y+LP  LTDADLATAFAPFG V+SAKV+ D++T ESKGFGFVSY   + ADAAI+ MNGF IG KRLKV  KR
Sbjct:  123 QEHKLFIGMIPKHADEASIREVFAPHGAIEEIYILRHPATGQSKGCAFLKYKDRHSASSAIEAFNGIYTMDRGTAPLVVKFADSRR--------------------QRIQRARNQAAT-------------------------------AAAAYW-QLPPGGTIPFPQIQQIQQQYMQQMQVFGAQALGGQTSPGGSPIPATNPATFMYYNPYAFAAASGYNSFPPAGGPA--------PFPLDPLATPMPGMGLSGARA---------------------------ATQLEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVFMDKNTGESKGFGFVSYDSVQAADAAIASMNGFQIGSKRLKVQHKR 409          
BLAST of mRNA_P-littoralis_Contig7.259.1 vs. uniprot
Match: D8LNL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL8_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 3.570e-40
Identity = 134/376 (35.64%), Postives = 168/376 (44.68%), Query Frame = 1
Query:  163 KLFVGMAPKSAYEADFRAVFAPFGRLVDIYVIRDRNGFSKGCAFVRYESVKSANDAIEALHDKHIMPGGFRTLVVTIADDRRGPQTATSAASASRRDASGSGDGLSRCLSRPSSFTGSDGGGGASTSSFSTHAGPTLHTAAAPNAAAAAYVPTVAPGGPS----------SLMSRMPYFLYGSPPHGTYVY-----YPYIPSSSRQQDTGT---SSVGPVVLGTKPHHAFPVSPSAVSNNNRGD-------------PGARGVHEDGQAGNETVRRFGTGGPEEKGRRWAKQFVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTLESKGFGFVSYTKPEEADAAISGMNGFFIGQKRLKVVRKR 1197
            KLFVGM P  A +     VF+ FG + +IY +R+ +G  KGCAFV++ +  +A  AIEALH+K  M G  R LVV  AD ++             R AS            P  + G   GGG S   +                    +  T APGG               +   Y     PP G Y       YP+ P   + +  G    S++ P       H+   V  S   ++  GD             PG  G            R    GG        A+   GP GANLF+Y+LP  LTDADLATAFAPFG V+SAKV+ D+ T ESKGFGFVSY  P EA+ AIS MNGF IG KRLKV  K+
Sbjct:   73 KLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMDGATRALVVKFADVKKAQTAKGWMVPPDARGAS------------PLGYNGRYHGGGTSVGGY--------------------WQATGAPGGRDVYSKGREVYPDYANHRGYPYQVGPPGGGYSQSYGPEYPHHPGQPQARHGGYVAYSNLNPS------HYPAQVDRSLSPSSGAGDRSHNFSSPPGGPVPGGIGXXXXXXXXXXXXRGEHGGG--------ARPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTQESKGFGFVSYNHPAEAEVAISKMNGFQIGSKRLKVQHKK 402          
BLAST of mRNA_P-littoralis_Contig7.259.1 vs. uniprot
Match: A0A662WJB0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJB0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.650e-40
Identity = 134/355 (37.75%), Postives = 170/355 (47.89%), Query Frame = 1
Query:  154 QTTKLFVGMAPKSAYEADFRAVFAPFGRLVDIYVIRD-RNGFSKGCAFVRYESVKSANDAIEALHDKHIMPGGFRTLVVTIADDRR-----GPQTATSAASASRRDASGSGDGLSRCLSRPSSFTGSDGGGGASTSSFSTHAGPTLHTAAAPNAAAAAYVPTVAPGGPS-SLMSRMPYFLYGSPPHGTYVYYPYIPSSSRQQDTGTSSVGPVVLGTKPHHAFPVSPSAVSNNNRGDPGARGVHEDGQAGNETVRRFGTGGPEEKGRRWAKQFVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTLESKGFGFVSYTKPEEADAAISGMNGFFIGQKRLKVVRKR 1197
            Q  KLF+GM PK+A EA  R VF  FG + ++Y++R    G SKGCAF++++   SA  AI+ ++    M  G   LVV  AD RR         A +AA+       G+G    +       +       GA T++      P     ++P  AAA       PG P+ S M   PY   G+ P+G                 G  SVG           F +  S +      D  ++GV                     K  R   Q  GPTGANLF+Y+LP  LTDADLATAFAPFG V+SAKVY D+ T ESKGFGFVSY   + ADAAI+ MNGF IG KRLKV  KR
Sbjct:  149 QEHKLFIGMIPKTADEAAIREVFELFGTIEEVYILRHPATGQSKGCAFLKFKDRNSALAAIDEVNGAVTMDRGTSPLVVKFADSRRQRLQRARNLAAAAANTYWPMPPGAGLPFPQLQQLQQQYMQQMQAFGAQTAAGMN---PVAAGLSSPVGAAA-----TGPGSPTNSFMYYNPYGFAGAAPYGF---------------NGLPSVG---------GGFDMQASLMGAAGGVDAQSQGVE-----------------AAAKASRTTSQLEGPTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFGFVSYDSADAADAAIASMNGFQIGSKRLKVQHKR 454          
BLAST of mRNA_P-littoralis_Contig7.259.1 vs. uniprot
Match: A0A3M6V9P8_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9P8_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.380e-39
Identity = 132/354 (37.29%), Postives = 170/354 (48.02%), Query Frame = 1
Query:  154 QTTKLFVGMAPKSAYEADFRAVFAPFGRLVDIYVIRD-RNGFSKGCAFVRYESVKSANDAIEALHDKHIMPGGFRTLVVTIADDRRG----PQTATSAASASRRDASGSGDGLSRCLSRPSSFTGSDGGGGASTSSFSTHAGPTLHTAAAPNAAAAAYVPTVAPGGPSSLMSRMPYFLYGSPPHGTYVYY-PYIPSSSRQQDTGTSSVGPVVLGTKPHHAFPVSPSAVSNNNRGDPGARGVHEDGQAGNETVRRFGTGGPEEKGRRWAKQFVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTLESKGFGFVSYTKPEEADAAISGMNGFFIGQKRLKVVRKR 1197
            Q  KLF+GM PK+A E+  R VF  FG + ++Y++R    G SKGCAF++++   SA  AIE ++    M  G   LVV  AD RR      +   +AA+A      G+G    +       +            +F   A   L+ A A         P  + GG  S             P  +++YY PY           T + GP   G  P+         V      D  + G+       N++V        E K  R   Q  GPTGANLF+Y+LP  LTDADLATAFAPFG V+SAKVY D+ T ESKGFGFVSY   + ADAAI+ MNGF IG KRLKV  KR
Sbjct:   77 QEHKLFIGMIPKTAEESAIREVFELFGNIEEVYILRHPATGQSKGCAFLKFKERSSALAAIEQVNGNVTMDRGTSPLVVKFADSRRQRLQRARNLAAAANAYWPLPPGAGMAFPQLQQLQQQYM-------QQMQAFGVQAAAGLNPAIA-----GLNSPVGSTGGMRS-------------PTNSFMYYNPY--------GFATGAAGPYGFGGMPN---------VGGGAGLDMQSSGMVVGMDMPNQSV--------EAKASRTTSQLEGPTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITSESKGFGFVSYDSADAADAAIASMNGFQIGTKRLKVQHKR 380          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0Y1_9PHAE1.170e-19364.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV61_ECTSI9.440e-18271.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FV60_ECTSI1.130e-5941.88Trinucleotide repeat containing 4, isoform CRA_d n... [more]
A0A7S4QD22_9STRA7.260e-4335.85Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A485KNC1_9STRA3.130e-4137.75Aste57867_9466 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S1BYN5_9STRA1.550e-4038.07Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1W0A7F0_9STRA1.700e-4035.83CUG-BP-and ETR-3-like factor n=1 Tax=Thraustotheca... [more]
D8LNL8_ECTSI3.570e-4035.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A662WJB0_9STRA4.650e-4037.75Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A3M6V9P8_9STRA1.380e-3937.29Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:1006699..1009340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FV61
PFAMsRRM_1
Model size1452
Max annot lvl2759|Eukaryota
KEGG koko:K13207
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.55e-182
EggNOG OGsKOG0144@1|root,KOG0146@2759|Eukaryota
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-12_007410.1
Descriptionpositive regulation of mRNA splicing, via spliceosome
Cds size1452
COG categoryE
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791458.2943828-CDS-P-littoralis_Contig7:1006698..10070541680791458.2943828-CDS-P-littoralis_Contig7:1006698..1007054Pylaiella littoralis U1_48CDSP-littoralis_Contig7 1006699..1007054 -
1680791458.306557-CDS-P-littoralis_Contig7:1007288..10082641680791458.306557-CDS-P-littoralis_Contig7:1007288..1008264Pylaiella littoralis U1_48CDSP-littoralis_Contig7 1007289..1008264 -
1680791458.317621-CDS-P-littoralis_Contig7:1009220..10093401680791458.317621-CDS-P-littoralis_Contig7:1009220..1009340Pylaiella littoralis U1_48CDSP-littoralis_Contig7 1009221..1009340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.259.1prot_P-littoralis_Contig7.259.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 1006699..1009340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.259.1

>prot_P-littoralis_Contig7.259.1 ID=prot_P-littoralis_Contig7.259.1|Name=mRNA_P-littoralis_Contig7.259.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=484bp
SYEQGETAPPWSVGWLANSTGTTVKHHIDDEFCGLRGEIPGNQGHNQGHN
GQTTKLFVGMAPKSAYEADFRAVFAPFGRLVDIYVIRDRNGFSKGCAFVR
YESVKSANDAIEALHDKHIMPGGFRTLVVTIADDRRGPQTATSAASASRR
DASGSGDGLSRCLSRPSSFTGSDGGGGASTSSFSTHAGPTLHTAAAPNAA
AAAYVPTVAPGGPSSLMSRMPYFLYGSPPHGTYVYYPYIPSSSRQQDTGT
SSVGPVVLGTKPHHAFPVSPSAVSNNNRGDPGARGVHEDGQAGNETVRRF
GTGGPEEKGRRWAKQFVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLS
AKVYYDRDTLESKGFGFVSYTKPEEADAAISGMNGFFIGQKRLKVVRKRG
QQTVRCPDNSSNSNSSGRVSDPAYAVGDGADGGSGSGTGSVKGFGNASVA
GVSSGERSLLGAGLQGHLDSFTPEGLLGQSMAR*
back to top

mRNA from alignment at P-littoralis_Contig7:1006699..1009340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.259.1 ID=mRNA_P-littoralis_Contig7.259.1|Name=mRNA_P-littoralis_Contig7.259.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2642bp|location=Sequence derived from alignment at P-littoralis_Contig7:1006699..1009340- (Pylaiella littoralis U1_48)
TCGTACGAGCAGGGAGAGACGGCTCCTCCATGGAGCGTCGGATGGCTTGC CAATTCAACGGGAACAACGGTAAAACACCACATCGATGACGAATTTTGCG GGCTTCGAGGAGAGATACCGGTGAGGGTTGTGCGTACAACAGAAAACCCG GTAGGTAGCCCAGTAAGGTACGCCCGACCCGAAGCCACGTTAGGGGTTGT CCATTGTGCGCAATACAGAGTGGAACATATACGGCGGAAGGGTGTGGATG ATCGATCATGAATCATGTAGTAATTAAGGCCTCGCACCACGGAAGAGCCG GGATTGAGCACGCCGATTAACCCCAGCAAAGCCTCGCATAAACACCAAGC GCGAAGCGCCGTGATGTGTTCTACGGGTCGCGAAAAGGGTGGGCGGCATC CTACAAAGTACGCTTGTGAGACGGAAGTCGGTATTTTGCGTGCATGTTTT CTCTCACACAGATGACAGCTTCAAATAAGCTGTTTCGTTGTCTGGTGATG CCAACTGCCTCTATGGGTGCCTGACCATTTACACACAGCGTTACACAACC ATGTGCGTGGGGTAACACTTGGTTTCCCCGCTCAATCTAACGAACTCGAC CGGCATTAATGGCTACCGCGAAGAGCACAAGAAAGCATATGTAGTGTTGG TTGTAGATCATATGGTGTGGCGTGCTTAATAGCGCCGTTACCAGCTGGCA CCAACCCCAAGGGTAAGCGGGGGAGGGGGGAGGTTAGACAATACAGGTAT CCAAAACAAGACACGCAAATTATGCATACTGAGATGTATTCCTTCGTCCT ACTTGTGCTATTGGTTTCGCCGTCGAGGGTGCCGGGGCGGGGAGGGGTGT GCTACGTTAGGCGTTGGACAAAAGTAGATCTGTGGGAAGGTGCCCACTGG TACAGGCCGGAAGAGCGATGTGTATGACCTGGCGAACTGGCGTCAGCGAG ACTCGGCAGGAGATTATAATTAGTTTGTTGTTAGCTATATTCCCTGCTCG TTAGCCACGAAAAAAGCCAGGCTGTCGACATATCTTACCTGCTGCATGCC TCCCCTTGATTCCTCATAAACAGCAGGGCAATCAAGGCCATAATCAAGGT CACAATGGACAGACGACAAAGCTCTTTGTGGGCATGGCTCCAAAGTCCGC TTACGAAGCCGACTTCAGGGCTGTGTTCGCGCCGTTCGGTAGGCTGGTCG ACATCTACGTCATCCGAGACAGGAACGGCTTCAGCAAGGGTTGCGCATTC GTGAGGTACGAGTCGGTCAAGAGCGCGAACGACGCGATCGAGGCTCTTCA CGATAAACACATCATGCCCGGAGGCTTTCGCACGCTCGTTGTGACCATCG CCGACGACCGCCGCGGCCCGCAAACCGCTACTTCTGCTGCTTCCGCTTCC CGCCGCGACGCCAGTGGCTCTGGAGACGGCTTGTCCCGCTGTCTGTCTCG GCCTTCGTCCTTCACGGGAAGCGACGGCGGCGGCGGAGCTAGTACTTCTA GCTTCAGCACACACGCAGGACCCACTTTACATACCGCCGCGGCACCGAAT GCGGCAGCAGCAGCGTATGTGCCTACCGTCGCACCGGGCGGTCCGTCTTC TTTGATGTCCAGGATGCCGTACTTTCTCTATGGCAGCCCTCCGCATGGAA CATACGTCTACTACCCTTATATACCATCATCATCTCGCCAGCAAGACACT GGTACTTCGTCCGTAGGCCCCGTCGTACTGGGTACCAAGCCTCACCACGC ATTTCCCGTCAGTCCTTCCGCCGTGAGCAACAACAACCGGGGCGACCCTG GTGCTAGGGGGGTGCACGAAGACGGTCAAGCTGGGAATGAGACGGTTCGT AGGTTCGGCACCGGTGGCCCCGAGGAAAAGGGTCGGCGGTGGGCAAAGCA GTTCGTCGGGCCCACGGGGGCAAACCTGTTCGTGTACTACCTCCCAGGTT CTCTCACAGACGCTGACCTCGCTACCGCGTTCGCTCCATTCGGAGAGGTG CTGAGCGCCAAGGTTTACTACGACCGAGACACCTTAGAAAGCAAGGGGTT CGGTGAGATGCTATTTTTTGTCTTGCAATATATATCGACATTGTTTTGTC CTCTTTTTTCGAAACGCAATTGCTTCTTTTGAGGTCGTGGAGTCAAGCAG GCCTTAGGGCAAGCACCTGCTGCAATGCGGTGCATGCTGGTAGACCAAGG CATTGTATGTGCCCCTGTTTGTACACATTTATACTTCGAGGCTGGCACTC ACCAATTTGTTTCTAACTTCGCCTTCACAATTACAGGCTTCGTGAGCTAC ACCAAACCCGAAGAAGCTGATGCCGCGATCTCTGGCATGAACGGCTTCTT CATCGGACAAAAGCGCCTCAAGGTCGTCCGCAAACGTGGGCAGCAGACCG TTCGCTGTCCCGACAACAGCAGCAACAGCAACAGCAGCGGTCGGGTCAGC GACCCTGCCTACGCCGTCGGTGATGGTGCGGATGGGGGCAGCGGCAGTGG CACTGGAAGCGTCAAAGGATTTGGCAACGCCAGCGTCGCCGGGGTTAGCA GCGGCGAACGTAGCCTCCTCGGCGCTGGGTTACAGGGGCACCTGGACTCC TTCACGCCCGAGGGCTTGCTTGGGCAGTCGATGGCGAGGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig7:1006699..1009340-

>mRNA_P-littoralis_Contig7.259.1 ID=mRNA_P-littoralis_Contig7.259.1|Name=mRNA_P-littoralis_Contig7.259.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1452bp|location=Sequence derived from alignment at P-littoralis_Contig7:1006699..1009340- (Pylaiella littoralis U1_48)
TCGTACGAGCAGGGAGAGACGGCTCCTCCATGGAGCGTCGGATGGCTTGC
CAATTCAACGGGAACAACGGTAAAACACCACATCGATGACGAATTTTGCG
GGCTTCGAGGAGAGATACCGGGCAATCAAGGCCATAATCAAGGTCACAAT
GGACAGACGACAAAGCTCTTTGTGGGCATGGCTCCAAAGTCCGCTTACGA
AGCCGACTTCAGGGCTGTGTTCGCGCCGTTCGGTAGGCTGGTCGACATCT
ACGTCATCCGAGACAGGAACGGCTTCAGCAAGGGTTGCGCATTCGTGAGG
TACGAGTCGGTCAAGAGCGCGAACGACGCGATCGAGGCTCTTCACGATAA
ACACATCATGCCCGGAGGCTTTCGCACGCTCGTTGTGACCATCGCCGACG
ACCGCCGCGGCCCGCAAACCGCTACTTCTGCTGCTTCCGCTTCCCGCCGC
GACGCCAGTGGCTCTGGAGACGGCTTGTCCCGCTGTCTGTCTCGGCCTTC
GTCCTTCACGGGAAGCGACGGCGGCGGCGGAGCTAGTACTTCTAGCTTCA
GCACACACGCAGGACCCACTTTACATACCGCCGCGGCACCGAATGCGGCA
GCAGCAGCGTATGTGCCTACCGTCGCACCGGGCGGTCCGTCTTCTTTGAT
GTCCAGGATGCCGTACTTTCTCTATGGCAGCCCTCCGCATGGAACATACG
TCTACTACCCTTATATACCATCATCATCTCGCCAGCAAGACACTGGTACT
TCGTCCGTAGGCCCCGTCGTACTGGGTACCAAGCCTCACCACGCATTTCC
CGTCAGTCCTTCCGCCGTGAGCAACAACAACCGGGGCGACCCTGGTGCTA
GGGGGGTGCACGAAGACGGTCAAGCTGGGAATGAGACGGTTCGTAGGTTC
GGCACCGGTGGCCCCGAGGAAAAGGGTCGGCGGTGGGCAAAGCAGTTCGT
CGGGCCCACGGGGGCAAACCTGTTCGTGTACTACCTCCCAGGTTCTCTCA
CAGACGCTGACCTCGCTACCGCGTTCGCTCCATTCGGAGAGGTGCTGAGC
GCCAAGGTTTACTACGACCGAGACACCTTAGAAAGCAAGGGGTTCGGCTT
CGTGAGCTACACCAAACCCGAAGAAGCTGATGCCGCGATCTCTGGCATGA
ACGGCTTCTTCATCGGACAAAAGCGCCTCAAGGTCGTCCGCAAACGTGGG
CAGCAGACCGTTCGCTGTCCCGACAACAGCAGCAACAGCAACAGCAGCGG
TCGGGTCAGCGACCCTGCCTACGCCGTCGGTGATGGTGCGGATGGGGGCA
GCGGCAGTGGCACTGGAAGCGTCAAAGGATTTGGCAACGCCAGCGTCGCC
GGGGTTAGCAGCGGCGAACGTAGCCTCCTCGGCGCTGGGTTACAGGGGCA
CCTGGACTCCTTCACGCCCGAGGGCTTGCTTGGGCAGTCGATGGCGAGGT
GA
back to top