mRNA_P-littoralis_Contig7.247.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.247.1
Unique NamemRNA_P-littoralis_Contig7.247.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig7.247.1 vs. uniprot
Match: A0A6H5JUX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX0_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.460e-34
Identity = 74/126 (58.73%), Postives = 93/126 (73.81%), Query Frame = 2
Query:    2 DRHVSQTSVADKFGCSVRKVCNIIKKRAEVEEKAATAGLGGKKTSRQGDFPEVDRMALDLFAKAREARIAVTRDVIRSFGRSAKATLLATATTSAALRNKLEDFQAGEKWAKNLVRRNGLHSQRLH 379
            D  VSQ  +AD+FGCS R V      R +VE  A  AG G +KT+R+GDFPEVD +AL L AKAR+A++ VTRDV+RSFGR+A+ TLLA   TSAA+R ++EDF+AGEKW KN V+RN + S RLH
Sbjct:  104 DAKVSQVQIADRFGCSERFVRTGKADRKKVEA-ATPAGGGTQKTARKGDFPEVDAIALYLLAKARKAKMPVTRDVLRSFGRTARTTLLADTATSAAVRARVEDFKAGEKWTKNFVKRNNIQSVRLH 228          
BLAST of mRNA_P-littoralis_Contig7.247.1 vs. uniprot
Match: A0A6H5JQU7_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU7_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 7.930e-34
Identity = 72/126 (57.14%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    2 DRHVSQTSVADKFGCSVRKVCNIIKKRAEVEEKAATAGLGGKKTSRQGDFPEVDRMALDLFAKAREARIAVTRDVIRSFGRSAKATLLATATTSAALRNKLEDFQAGEKWAKNLVRRNGLHSQRLH 379
            D+ VS   +AD+F CS+R +  +   R +VE  A  AG G +K +R+GDFPEVD +ALDL  KAR+A++ VTRDV+RSFGRSA+ATLLA   TSAA+R ++EDF+AGE+WAKN V+RN + S RLH
Sbjct:  105 DQKVSHAQIADRFTCSLRFIGTVKAGRQKVEI-ATAAGCGSQKAARKGDFPEVDEIALDLLDKARKAKMPVTRDVLRSFGRSARATLLADIATSAAVRERVEDFKAGERWAKNFVKRNKIQSVRLH 229          
BLAST of mRNA_P-littoralis_Contig7.247.1 vs. uniprot
Match: A0A6H5KD82_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD82_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.040e-33
Identity = 72/126 (57.14%), Postives = 94/126 (74.60%), Query Frame = 2
Query:    2 DRHVSQTSVADKFGCSVRKVCNIIKKRAEVEEKAATAGLGGKKTSRQGDFPEVDRMALDLFAKAREARIAVTRDVIRSFGRSAKATLLATATTSAALRNKLEDFQAGEKWAKNLVRRNGLHSQRLH 379
            D+ VS   +AD+F CS+R +      R +VE  A  AG G +K +R+GDFPEVD +ALDL  KAR+A++ VTRDV+RSFGRSA+ATLLA   TSAA+R ++EDF+AGE+WAKN V+RN + S RLH
Sbjct:  105 DQKVSHAQIADRFKCSLRFIGTANAGRQKVET-ATAAGCGSQKIARKGDFPEVDEIALDLLDKARKAKMPVTRDVLRSFGRSARATLLAGTATSAAVRERVEDFKAGERWAKNFVKRNQIQSVRLH 229          
BLAST of mRNA_P-littoralis_Contig7.247.1 vs. uniprot
Match: A0A6H5JH32_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH32_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 3.080e-33
Identity = 71/126 (56.35%), Postives = 92/126 (73.02%), Query Frame = 2
Query:    2 DRHVSQTSVADKFGCSVRKVCNIIKKRAEVEEKAATAGLGGKKTSRQGDFPEVDRMALDLFAKAREARIAVTRDVIRSFGRSAKATLLATATTSAALRNKLEDFQAGEKWAKNLVRRNGLHSQRLH 379
            D+  S   +AD+F CS+R +  +   R +  E A  AG G +KT+R+GDFPEVD +ALDL  KAR+A + VTRDV+RSFGRSA+ATLLA   TSAA+R  +EDF+AGE+WAKN V+RN + S RLH
Sbjct:    3 DQKASHAQIADRFKCSLRFMGTVKTGREKKVETAIAAGCGSQKTARKGDFPEVDEIALDLLEKARKAIMPVTRDVLRSFGRSARATLLADTATSAAVREGVEDFKAGERWAKNFVKRNKIQSVRLH 128          
BLAST of mRNA_P-littoralis_Contig7.247.1 vs. uniprot
Match: A0A6H5JWL9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL9_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 8.500e-33
Identity = 72/126 (57.14%), Postives = 91/126 (72.22%), Query Frame = 2
Query:    2 DRHVSQTSVADKFGCSVRKVCNIIKKRAEVEEKAATAGLGGKKTSRQGDFPEVDRMALDLFAKAREARIAVTRDVIRSFGRSAKATLLATATTSAALRNKLEDFQAGEKWAKNLVRRNGLHSQRLH 379
            D  VS   VAD+F CSVR +  +   R  +E  AA AG G +K +R+GDFPEVD+++LDL  KAR+A+I VTRDV RSFGRSA+ TLLA   TS A+R ++EDF+AGEKWAK  V+RN + S RLH
Sbjct:   44 DAKVSYVQVADRFSCSVRFLATVRSDRKAIEA-AAAAGNGCQKNARKGDFPEVDKISLDLLEKARQAKIPVTRDVFRSFGRSARVTLLADPATSEAVRARVEDFKAGEKWAKKFVKRNKIQSVRLH 168          
BLAST of mRNA_P-littoralis_Contig7.247.1 vs. uniprot
Match: A0A6H5J7S2_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7S2_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 6.420e-32
Identity = 69/126 (54.76%), Postives = 93/126 (73.81%), Query Frame = 2
Query:    2 DRHVSQTSVADKFGCSVRKVCNIIKKRAEVEEKAATAGLGGKKTSRQGDFPEVDRMALDLFAKAREARIAVTRDVIRSFGRSAKATLLATATTSAALRNKLEDFQAGEKWAKNLVRRNGLHSQRLH 379
            D+ VS   +AD+F C +R +  +   R +VE  A  AG   +KT+R+GDFPEVD +ALDL  KAR+A++ VTRDV+RSFGRS +ATLLA   TSAA+R ++EDF+AG++WAKN V+RN + S RLH
Sbjct:  105 DQKVSHAQIADRFKCLLRFIGTVKAGRQKVET-ATAAGCSSQKTARKGDFPEVDEIALDLLDKARKAKMPVTRDVLRSFGRSTRATLLADTATSAAVRERVEDFKAGKRWAKNFVKRNKIQSVRLH 229          
BLAST of mRNA_P-littoralis_Contig7.247.1 vs. uniprot
Match: A0A6H5J8J7_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8J7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 9.700e-29
Identity = 63/126 (50.00%), Postives = 88/126 (69.84%), Query Frame = 2
Query:    2 DRHVSQTSVADKFGCSVRKVCNIIKKRAEVEEKAATAGLGGKKTSRQGDFPEVDRMALDLFAKAREARIAVTRDVIRSFGRSAKATLLATATTSAALRNKLEDFQAGEKWAKNLVRRNGLHSQRLH 379
            D+ V+   +AD+F CS R V ++ K R + E +AA    G KK  R G+ PEVD +ALDL  KAR+ ++ VTRDV+RSFGR+A+ATLLA    S  ++ ++EDF+AGE+WA+N V+RN + S RLH
Sbjct:    6 DQKVTHEQLADRFKCSERLVRDVKKNRKKYETEAAAGRGGSKKNVRTGNNPEVDAIALDLLEKARKTKMPVTRDVLRSFGRAARATLLADPAASKEVKARVEDFKAGERWARNFVKRNIIDSVRLH 131          
BLAST of mRNA_P-littoralis_Contig7.247.1 vs. uniprot
Match: A0A6H5LCM9_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCM9_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 5.660e-28
Identity = 62/126 (49.21%), Postives = 88/126 (69.84%), Query Frame = 2
Query:    2 DRHVSQTSVADKFGCSVRKVCNIIKKRAEVEEKAATAGLGGKKTSRQGDFPEVDRMALDLFAKAREARIAVTRDVIRSFGRSAKATLLATATTSAALRNKLEDFQAGEKWAKNLVRRNGLHSQRLH 379
            D  V+   +AD+F CSVR V N+ K R + E +AA      KK+ R+GDFP V+ +ALDL  KAR+A++ VTR+V+RSFGRSA+ATLL     S  ++ +++DF+AGE+WA+N V+RN + S R H
Sbjct:   71 DAKVTHEQIADRFACSVRLVRNVKKNRQKHEAEAAXXXXXSKKSLRKGDFPAVEAIALDLLEKARKAKMPVTREVLRSFGRSARATLLGDPAASKEVKARVQDFKAGERWAQNFVKRNNIQSARPH 196          
BLAST of mRNA_P-littoralis_Contig7.247.1 vs. uniprot
Match: A0A6H5L4D9_9PHAE (DDE-1 domain-containing protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.130e-27
Identity = 63/126 (50.00%), Postives = 88/126 (69.84%), Query Frame = 2
Query:    2 DRHVSQTSVADKFGCSVRKVCNIIKKRAEVEEKAATAGLGGKKTSRQGDFPEVDRMALDLFAKAREARIAVTRDVIRSFGRSAKATLLATATTSAALRNKLEDFQAGEKWAKNLVRRNGLHSQRLH 379
            D+ V+   +AD+F CS R V ++ K R + E +AA    G KK  R G+ PEVD +ALDL  KAR+ ++ VTRDV+RSFGR+A+ATLLA    S  ++ ++EDF+AGE+WA+N V+RN + S RLH
Sbjct:    6 DQKVTHEQLADRFKCSERLVRDVKKNRKKYETEAAAGRGGSKKNVRTGNNPEVDAIALDLLEKARKTKMPVTRDVLRSFGRAARATLLADPAASKEVKARVEDFKAGERWARNFVKRNSIDSVRLH 131          
BLAST of mRNA_P-littoralis_Contig7.247.1 vs. uniprot
Match: A0A6H5K1E5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E5_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.910e-26
Identity = 63/97 (64.95%), Postives = 80/97 (82.47%), Query Frame = 2
Query:   80 RAEVEEKAATAGLGG-KKTSRQGDFPEVDRMALDLFAKAREARIAVTRDVIRSFGRSAKATLLATATTSAALRNKLEDFQAGEKWAKNLVRRNGLHS 367
            R +VE  AATA +GG +KT+R+GDFPEVD +AL L AKAR+A++ V RDV+RSFGRSA+ TLLA   TSAA+R ++EDF+AGEKWAKN V+RN +HS
Sbjct:  110 RKKVE--AATAAVGGIQKTARKGDFPEVDAIALYLLAKARKAKMPVIRDVLRSFGRSARTTLLADTATSAAVRARIEDFKAGEKWAKNFVKRNNIHS 204          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUX0_9PHAE2.460e-3458.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQU7_9PHAE7.930e-3457.14HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KD82_9PHAE3.040e-3357.14HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JH32_9PHAE3.080e-3356.35HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JWL9_9PHAE8.500e-3357.14DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J7S2_9PHAE6.420e-3254.76HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5J8J7_9PHAE9.700e-2950.00Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LCM9_9PHAE5.660e-2849.21HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5L4D9_9PHAE1.130e-2750.00DDE-1 domain-containing protein n=8 Tax=Ectocarpus... [more]
A0A6H5K1E5_9PHAE1.910e-2664.95DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:974791..976017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size688
Hectar predicted targeting categoryother localisation
Exons2
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791457.408359-UTR-P-littoralis_Contig7:974790..9749071680791457.408359-UTR-P-littoralis_Contig7:974790..974907Pylaiella littoralis U1_48UTRP-littoralis_Contig7 974791..974907 -
1680791457.4334164-UTR-P-littoralis_Contig7:975312..9753211680791457.4334164-UTR-P-littoralis_Contig7:975312..975321Pylaiella littoralis U1_48UTRP-littoralis_Contig7 975313..975321 -
1680791457.4457304-UTR-P-littoralis_Contig7:975860..9760171680791457.4457304-UTR-P-littoralis_Contig7:975860..976017Pylaiella littoralis U1_48UTRP-littoralis_Contig7 975861..976017 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791457.4224734-CDS-P-littoralis_Contig7:974907..9753121680791457.4224734-CDS-P-littoralis_Contig7:974907..975312Pylaiella littoralis U1_48CDSP-littoralis_Contig7 974908..975312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.247.1prot_P-littoralis_Contig7.247.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 974908..975312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.247.1

>prot_P-littoralis_Contig7.247.1 ID=prot_P-littoralis_Contig7.247.1|Name=mRNA_P-littoralis_Contig7.247.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MALDLFAKAREARIAVTRDVIRSFGRSAKATLLATATTSAALRNKLEDFQ
AGEKWAKNLVRRNGLHSQRLHTFTLMRMKRGKTRRMMTMRARSPWRAPHP
PMPNCRLTSASWRQLRRSVGTETLLFICRKPGYR*
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mRNA from alignment at P-littoralis_Contig7:974791..976017-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.247.1 ID=mRNA_P-littoralis_Contig7.247.1|Name=mRNA_P-littoralis_Contig7.247.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1227bp|location=Sequence derived from alignment at P-littoralis_Contig7:974791..976017- (Pylaiella littoralis U1_48)
GGACAGGCACGTGTCCCAAACATCGGTAGCGGACAAGTTTGGGTGCTCAG TGCGGAAGGTTTGCAACATCATCAAGAAACGCGCGGAGGTCGAGGAGAAG GCAGCCACAGCAGGCCTAGGCGGAAAAAAGACCTCTCGGCAAGGGGATTT TCCAGAGGTGAGAGAGACAGACGCGCTGACAAGTCGCTGACAAATTACCT TGCCACTTTGTTTTTTCAGGGATTTTTATTAGACTCCTTTTTTTCGAAGT TGTTTTTTGGTGTTTTTTTTCGAGTTCATTTTTTCTCTGTCACGTCTCCT TCGTTTTTCTACTCGTTTTTTTATCTTCCTCTGCCCGCAGAGAAAACTGT TGTGACGTACGGGGCATTATCTTCCATGAAGTACTGCTCCTCTCGAGTTG TTTGTTCTTCTGCAGATAGATGTCCATTTCAAGAAACATGCGTTTGATGA GACAAGAGCAGCAAAAGTACCAGTTTGCAAAAAGGTCATCCCACGAGAAA TGGGATTTACGTTGTTTGTTGTTGTTGATTCTCACATTAGCTCACTACCG CCGCAGTCTAGCCCGTGGTCACAAACCAGGCACAAAACGTGGTCTAGCTT AACTTCACAGTAAAGTTCGCATGGCGATCATAAAATATAAATTGATGTAG TGCTCTCCCGCATCCCTTTCCCTCCTTGACGCTTCATTGTGTACAGGTGG ATAGAATGGCGCTGGACCTTTTCGCCAAGGCGAGGGAGGCCAGGATCGCC GTCACTCGCGACGTCATCCGAAGCTTCGGCCGCTCCGCGAAGGCCACCCT GCTTGCAACAGCAACGACTTCTGCAGCCCTCCGGAACAAGCTCGAGGATT TCCAGGCCGGCGAGAAGTGGGCCAAGAATCTCGTGAGGCGCAACGGTCTT CACAGCCAAAGACTTCACACGTTCACGCTGATGCGGATGAAGAGGGGGAA AACGAGGAGGATGATGACGATGAGAGCACGGAGCCCGTGGAGGGCGCCCC ACCCGCCTATGCCGAACTGTCGCCTTACTTCGGCGTCCTGGAGACAGCTG CGGAGGAGTGTGGGGACAGAGACGCTGCTTTTTATCTGTCGAAAGCCAGG ATATCGATGATCGCCGCGCATGCCGCAAAACGAACGCGTCAGACAGACTT GAGGCAATTTGTAGCGGCCGATGTTGTTGAAACGGAGTGAGAAGGAACCA GGATGCCGAACTCGTTGTTGATTTCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:974791..976017-

>mRNA_P-littoralis_Contig7.247.1 ID=mRNA_P-littoralis_Contig7.247.1|Name=mRNA_P-littoralis_Contig7.247.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig7:974791..976017- (Pylaiella littoralis U1_48)
ATGGCGCTGGACCTTTTCGCCAAGGCGAGGGAGGCCAGGATCGCCGTCAC
TCGCGACGTCATCCGAAGCTTCGGCCGCTCCGCGAAGGCCACCCTGCTTG
CAACAGCAACGACTTCTGCAGCCCTCCGGAACAAGCTCGAGGATTTCCAG
GCCGGCGAGAAGTGGGCCAAGAATCTCGTGAGGCGCAACGGTCTTCACAG
CCAAAGACTTCACACGTTCACGCTGATGCGGATGAAGAGGGGGAAAACGA
GGAGGATGATGACGATGAGAGCACGGAGCCCGTGGAGGGCGCCCCACCCG
CCTATGCCGAACTGTCGCCTTACTTCGGCGTCCTGGAGACAGCTGCGGAG
GAGTGTGGGGACAGAGACGCTGCTTTTTATCTGTCGAAAGCCAGGATATC
GATGA
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