mRNA_P-littoralis_Contig7.240.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.240.1
Unique NamemRNA_P-littoralis_Contig7.240.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig7.240.1 vs. uniprot
Match: A0A6H5KRJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ5_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 3.850e-61
Identity = 132/277 (47.65%), Postives = 166/277 (59.93%), Query Frame = 3 
Query:   72 LRVEDRGVTVEEMAKVWYLLMNLRLLAQLKNEGLRDPCVYRGRKDAEDLDYAQFRSLAGAAIMPKSGLHSVYDAFGGDLGAMEKKFGHAAEGGLASFMNLLRSKGGDGRVLEDHPVFP-DATTWDRPVLNTQGMCLQGGKRAFFHEAPTRVTGKTAKACDDVSPFDGGPVSKMNRTLTSCIKIVTD---SDGSAIPHCAAVKLVRPELRETAEIVEVAWMQAVLHNFPKSPVVGVFRGGDIAEAGRAANTVQQLAAVGDRNACVCHGNHSAAHSGRP 890
            LRVEDR VT  E  +   LL N R L  L+NE L DP VYRG + AEDLD  Q R+L GAA++P++GL  +   F GDL A+E     A   G       L  +G D  V  +HP F  D   W RP+L  QGMCLQ  KRAF+HE+PT  TGK + A   VS F GGP    NR   SC+K+  D   S  SAIPHCAA+  +RPELR+ A +VE ++ ++ L +F  +P VGVFRGGDI +AG   +TV++LA+VG R A V  G H +   G P
Sbjct:   70 LRVEDREVTPAEKQEARRLLENPRELHGLRNEALDDPRVYRGTRSAEDLDRHQLRNLVGAALLPENGLSKILGFFRGDLRALEIACKEAELQGPVRLSKFLGERGVDVPVNLNHPAFAGDPAAWTRPILLKQGMCLQYQKRAFYHESPTTTTGKASAAASKVSSFQGGPAGHGNRLGASCVKVEADRAGSSASAIPHCAALSQLRPELRKVAGVVERSFARSFLRHFTATPGVGVFRGGDITQAGCGRDTVRELASVGGRKAFVYWGRHQSRTIGDP 346
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BLAST of mRNA_P-littoralis_Contig7.240.1 vs. uniprot
Match: A0A6H5KLH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLH7_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.910e-53
Identity = 133/288 (46.18%), Postives = 161/288 (55.90%), Query Frame = 3 
Query:    3 AAAGTCHQPKWLPWMLLTANRHGLRVEDRGVTVEEMAKVWYLLMNLRLLAQLKNEGLRDPCVYRGRKDAEDLDYAQFRSLAGAAIMPKSGLHSVYDAFGGDLGAMEKKFGHAAEGGLASFMNLLRSKGGDGRVLEDHPVFPDATTWDRPVLNTQGMCLQGGKRAFFHEAPTRVTGKTAKACDDVSPFDGGPVSKMNRTLTSCIKIVTDSDGSAIPHCAAVKLVRPELRETAEIVEVAWMQAVLHNFPKSPVVGVFRGGDIAEAGRAANTVQQLAAVGDRNACVCHGNH 866
            A A     PKW            LR+EDR VT  E  +V  LL N R L  L+N  LR P V RG K+ +DLD  Q R+LA +AI+P++GLH+ YD+FGGDLG M  +F +AA+GGLASFM+ LR+                 +   RP L    + L G  R   H   T VTGK A+ACD VSPF GGPV+KMNRTL SC+KIVTD DGS+IPHC  V L+R EL+ TA                        +GGD AE GRA NT Q+L  VG R A V +GNH
Sbjct:  302 ALAAFERNPKWF-----------LRIEDRDVTTVEREQVEDLLRNPRRLTTLENGALRIPRVSRGCKEPKDLDCHQLRNLACSAILPENGLHATYDSFGGDLGRMRVEFDNAADGGLASFMDFLRA----------------CSKVTRPSL----IRLAGTSRC--HARKTTVTGKVARACDAVSPFVGGPVAKMNRTLASCVKIVTDRDGSSIPHCPPVGLLRRELQHTA------------------------KGGDHAETGRAKNTAQELVEVGGRRAWVYYGNH 532
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRJ5_9PHAE3.850e-6147.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLH7_9PHAE1.910e-5346.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:928312..932379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2706
Hectar predicted targeting categoryother localisation
Exons3
Cds size1122
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791456.683887-UTR-P-littoralis_Contig7:928311..9283551680791456.683887-UTR-P-littoralis_Contig7:928311..928355Pylaiella littoralis U1_48UTRP-littoralis_Contig7 928312..928355 +
1680791456.7101007-UTR-P-littoralis_Contig7:929477..9294911680791456.7101007-UTR-P-littoralis_Contig7:929477..929491Pylaiella littoralis U1_48UTRP-littoralis_Contig7 929478..929491 +
1680791456.7232337-UTR-P-littoralis_Contig7:929990..9300661680791456.7232337-UTR-P-littoralis_Contig7:929990..930066Pylaiella littoralis U1_48UTRP-littoralis_Contig7 929991..930066 +
1680791456.7332625-UTR-P-littoralis_Contig7:930929..9323791680791456.7332625-UTR-P-littoralis_Contig7:930929..932379Pylaiella littoralis U1_48UTRP-littoralis_Contig7 930930..932379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791456.6979446-CDS-P-littoralis_Contig7:928355..9294771680791456.6979446-CDS-P-littoralis_Contig7:928355..929477Pylaiella littoralis U1_48CDSP-littoralis_Contig7 928356..929477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.240.1prot_P-littoralis_Contig7.240.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 928356..929477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.240.1

>prot_P-littoralis_Contig7.240.1 ID=prot_P-littoralis_Contig7.240.1|Name=mRNA_P-littoralis_Contig7.240.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=374bp
MLLTANRHGLRVEDRGVTVEEMAKVWYLLMNLRLLAQLKNEGLRDPCVYR
GRKDAEDLDYAQFRSLAGAAIMPKSGLHSVYDAFGGDLGAMEKKFGHAAE
GGLASFMNLLRSKGGDGRVLEDHPVFPDATTWDRPVLNTQGMCLQGGKRA
FFHEAPTRVTGKTAKACDDVSPFDGGPVSKMNRTLTSCIKIVTDSDGSAI
PHCAAVKLVRPELRETAEIVEVAWMQAVLHNFPKSPVVGVFRGGDIAEAG
RAANTVQQLAAVGDRNACVCHGNHSAAHSGRPKPWTAASGEAWSCTGRAR
AGTPSRTRPSPAAWRISLAESSTTTLRHGGGRPTTTTDGILSSWRWFFRA
QSRPVKRRVRSPRDQGKGHEDQG*
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mRNA from alignment at P-littoralis_Contig7:928312..932379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.240.1 ID=mRNA_P-littoralis_Contig7.240.1|Name=mRNA_P-littoralis_Contig7.240.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4068bp|location=Sequence derived from alignment at P-littoralis_Contig7:928312..932379+ (Pylaiella littoralis U1_48)
CGGCAGCGGCGGGAACTTGTCACCAGCCCAAGTGGCTGCCCTGGATGCTC
TTGACCGCAAACCGGCATGGTTTGCGCGTCGAAGACAGGGGCGTTACTGT
AGAGGAGATGGCGAAGGTCTGGTATCTGCTGATGAACCTGCGCCTCCTGG
CCCAGCTGAAAAACGAGGGGCTGCGGGACCCCTGTGTCTATCGAGGCCGC
AAAGATGCGGAGGACCTAGACTACGCCCAATTCCGAAGCCTCGCTGGTGC
AGCAATTATGCCGAAGAGTGGCCTGCACTCAGTCTACGACGCCTTCGGGG
GAGACTTGGGGGCGATGGAGAAGAAGTTCGGACATGCGGCAGAGGGAGGT
CTTGCCTCGTTCATGAATCTCCTGCGCAGCAAGGGGGGCGACGGGAGGGT
GCTTGAAGATCACCCGGTCTTCCCTGATGCGACAACCTGGGACAGACCGG
TGCTGAACACACAAGGCATGTGTCTACAGGGCGGGAAGCGCGCCTTCTTT
CACGAGGCACCAACTAGGGTCACCGGGAAGACCGCGAAAGCGTGCGACGA
CGTCTCCCCCTTTGACGGCGGTCCCGTCTCAAAGATGAACCGCACGCTCA
CCTCGTGCATCAAGATCGTTACGGACAGCGACGGCTCTGCCATCCCGCAC
TGCGCTGCGGTGAAGCTTGTGCGCCCAGAGCTGCGGGAAACCGCGGAGAT
TGTCGAGGTGGCGTGGATGCAGGCCGTGCTTCACAACTTTCCCAAGTCTC
CGGTTGTGGGAGTTTTCAGGGGCGGCGACATTGCCGAAGCGGGACGGGCA
GCAAACACCGTTCAACAGCTGGCGGCTGTGGGAGATAGAAATGCGTGTGT
CTGCCACGGCAACCACAGTGCCGCGCACTCGGGACGACCGAAGCCCTGGA
CAGCAGCGTCAGGGGAGGCCTGGAGCTGTACCGGGCGTGCACGGGCGGGG
ACGCCGTCACGGACGCGGCCGTCGCCTGCGGCATGGCGGATCTCGTTGGC
AGAGTCCTCGACAACCACGTTGAGACACGGGGGGGGGCGACCGACAACGA
CAACAGACGGTATACTGAGCTCGTGGAGGTGGTTTTTCAGGGCCCAGTCC
AGGCCCGTGAAAAGGCGTGTGAGGTCGCCAAGAGATCAGGGGAAAGGCCA
CGAGGACCAGGGATGACTGCGCGGCTGGAGGTGCGTACGTCTATCTGTCC
GTGTCTCGAGGCGGCCGAGGGTTGTTGTCGTTGTTTTTCGTCAGGTGTTC
GTGTTTTTTTCAAACGTCTTTGTTACTACTGCTGCTGCTGCTGCTGCTGC
TGCCGACCGCCGCTGCTGTTGCTGTTGTCGTCGTTGTTGATGTTGTTGTC
GTTGTTGTTGTTGTCGGCAGCATTGAGTTCATTTTTCGCTGTCGCCACCC
CCCCCTACCGGCGCCAATCGTTGCTACCTCGCCCGCGTAGCCTCCCCCGA
CCCCGCCCCCTTCGCCCCGACTGCTTCTATTGGCCACGTACGTTGCTCGA
AACGTTGGAGGGGGTTGGGGGCACAATGCCAATAGGTGCAATTGATTTAT
CCATCTGCTATATTACCGCGTCAATGACAATGCCTCCACCCACATGCCAT
CGCCACACTTGATTTCTCCCAGTGAACGTAACGTGCTCGCTGTTGTCCCT
TCCGCATCGTATCCGGATTGTCGTTCCAGGCGACGCTTCCATCAAGGTCA
GAAAGCTGAACCCCGAGAAGTATCGGCAAGATTGCGCGGACGGAGGTACG
TTGCGGCTGCTGTCGCTGCTGCTGCTGCTGCTTCGTTGGCGTCGGAATAC
AGTCCCCTGTCGCTGTCTTGTTGGTGATGATGATGTTCCTGCTGCTGCAT
CATGATGTTGATCATGTCTGCAAAAAATGGTGCTTATGTTGATGATTTTG
TTTTTTGTGTCGCATTTGCCTCCTCTGCCCCCCCCCCCCCCACCGGCCCC
AATCGTTGCTACCTCGCCCGTGTGGCCTCCCCCGCCCCCTCGACCCCCCT
TCGCCCCGACTGTTTCTATTGGCCGCGCACGTTGCTCGCGGATGTTGTCG
AGTCGATGCCTGTGTTACCTCTTGAAGACGATGTCATACGTCTAGTTATA
ATTAATCTGCTCTAATTTTCCCTCTCCCCCATGTGTCCCGTCTTCAATGC
TGCTGCCGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGTCACTTCTGATG
ACGCTGGTCTGAGAAGGGAAAATTGGAGGTATGATGCTAGTGTCTTGGTT
CAAATTTCGGCAGCATTGAGTCCATTTTCCACTTTTCTCTTGCCCCCCCC
CCCACCGGCGCCAATCGTTGCTACCTCGCCCGTGTGGCCTCCCCCGCCCC
CTCGACCCCATTCGCCCCGACTGTTTCTATTGGCCGCGTACGTTGCTCGC
GGATGTTGTCTTGTATAATGATTGCCCTCAACGTACCAGAGTGGCCACCT
GTGCAGCAGAATATCATCGGGTCAGCCTGTCAGCTGTGGATGCAACGTGT
TCGTGCCATCTGACTCGAAAACCGTCAATCAGCACTCCTCACAAGGTACC
CCCCCCCCCCTAAACGACCCTCCTTGATCATCCGGTGCTCCTTTCGCGTA
AAAATCCGACGACAACAGGCTCACTCTCACACTGGATATGGCTACTGGTC
CATCATCCGAGGACGGACCCCCAGCATCCAAACCTCGTGCCACTTGTGGC
CGTACGCTTGCCCCTTATACCCTTGGTCCGGGCGGCCTTTTGAAGGAGTG
AGGCCGCTCCGATGTACTTTCCTTCCCCTACGGGTCGGAATACACCCTGC
GCTCCCCGCAACCCCCCCTGCGAAGACCGGCATCGTTGCCCCAACAGCTT
GCGCTCCTCCCCCGAAAGATTGTGGTTGACCGCAACGGAGATGGAATGAT
CATTGCGGTCAAACCACTCCAGCCAAGCCCCACCGTCGCAGCTGCTGCAC
ACCGCCCGCACGCGCTGGCCGGGCAGGTAGACGGCGTAGTTCTTCCATTT
GTCCGGTTTCGGACCGGAGCTGTTGGACGCGCCGGTGGCGCTGTCCGTGT
TTCGCTCGTCGGCGCCCTTGATGCCGTCGCGTATTGCACTTTTTGAACCT
GTGAGTGTTGTTTGAGGCAACGCGTTAGCTTTAGTCCATCAAATATGCCG
CAAAAGACCCCTTTCGTTCAATCGACAAAGGCGCGCCAGACTTTGTTCCG
AGTGAAGCTGAGTTGCAATCATCTTGAGGGGAGGAATACCTGCAGTAGGC
TGTTGCGTTTATTGTGTTGATGGGGGTGTGGTATTGCGGGGTATTGTGTA
GTGTTGCGGGATGTTGTGTGTTGATGGTGCTGGTGGTGTGGTGGGGGTGA
TCAATCCCGTCATATGATCGGGCCAGAAAAAAAAAAATGATgGGGGGGGG
ATGGTATCCCAAGTGATTTGCGTATAGAATGTCTTGAAAAACAGCCAAGC
CGAGCACCACACCACCAGCTGCTGGTGCTGCGCTGCTGTGGTGTGTGTTG
TGTACAGCTAGCTGTGGTGTACAACAGCAGCACGTGTGTTGTGTATGGTG
TGTGTGTTGCTGCTGCTGGTGCTGTTATCTGGGTAGATCTACTGCTGCTG
CTGTTTCTGCTGCTGCTGTTGTCGTTGGGGCGCCTACCTGTCGGTGTCGT
CATATTCGAATGGAGCGTAGGACGGCGGGTGTTTATATTGGAGTGCATTT
TCCGTTCGGTGTTGTCCGTCGAAAGATATTCATTGGAACGTGCGAGAGCC
GCAAAGGAAACGTGGGTCGTCTGCGTTCGACGTGTATACTCGAGGAATCT
ATGCGATGAATTTTTGCGGGTCAGATCCGCAGCAACAAGTCTGCCTGTTG
TTGTCTGTCTGTGGTTGATATGGACTTGAGTCCACGGTCGTTGTCCTCGA
TCCTGACGTGGCCATGGCTGTTTCAGGCGAGTGACTGTGTGCGGAATATG
ATTTATAGTGCTGAATTTGCTGGAGTGGTCCGAGGAAAGTTCGTTTTTTC
ATGTTTTCGCTGGAAATCCAAAACGTTTTGGTGATGGATACGGCTCGCGG
TGTTTTTCTATTCTATAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:928312..932379+

>mRNA_P-littoralis_Contig7.240.1 ID=mRNA_P-littoralis_Contig7.240.1|Name=mRNA_P-littoralis_Contig7.240.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1122bp|location=Sequence derived from alignment at P-littoralis_Contig7:928312..932379+ (Pylaiella littoralis U1_48)
ATGCTCTTGACCGCAAACCGGCATGGTTTGCGCGTCGAAGACAGGGGCGT
TACTGTAGAGGAGATGGCGAAGGTCTGGTATCTGCTGATGAACCTGCGCC
TCCTGGCCCAGCTGAAAAACGAGGGGCTGCGGGACCCCTGTGTCTATCGA
GGCCGCAAAGATGCGGAGGACCTAGACTACGCCCAATTCCGAAGCCTCGC
TGGTGCAGCAATTATGCCGAAGAGTGGCCTGCACTCAGTCTACGACGCCT
TCGGGGGAGACTTGGGGGCGATGGAGAAGAAGTTCGGACATGCGGCAGAG
GGAGGTCTTGCCTCGTTCATGAATCTCCTGCGCAGCAAGGGGGGCGACGG
GAGGGTGCTTGAAGATCACCCGGTCTTCCCTGATGCGACAACCTGGGACA
GACCGGTGCTGAACACACAAGGCATGTGTCTACAGGGCGGGAAGCGCGCC
TTCTTTCACGAGGCACCAACTAGGGTCACCGGGAAGACCGCGAAAGCGTG
CGACGACGTCTCCCCCTTTGACGGCGGTCCCGTCTCAAAGATGAACCGCA
CGCTCACCTCGTGCATCAAGATCGTTACGGACAGCGACGGCTCTGCCATC
CCGCACTGCGCTGCGGTGAAGCTTGTGCGCCCAGAGCTGCGGGAAACCGC
GGAGATTGTCGAGGTGGCGTGGATGCAGGCCGTGCTTCACAACTTTCCCA
AGTCTCCGGTTGTGGGAGTTTTCAGGGGCGGCGACATTGCCGAAGCGGGA
CGGGCAGCAAACACCGTTCAACAGCTGGCGGCTGTGGGAGATAGAAATGC
GTGTGTCTGCCACGGCAACCACAGTGCCGCGCACTCGGGACGACCGAAGC
CCTGGACAGCAGCGTCAGGGGAGGCCTGGAGCTGTACCGGGCGTGCACGG
GCGGGGACGCCGTCACGGACGCGGCCGTCGCCTGCGGCATGGCGGATCTC
GTTGGCAGAGTCCTCGACAACCACGTTGAGACACGGGGGGGGGCGACCGA
CAACGACAACAGACGGTATACTGAGCTCGTGGAGGTGGTTTTTCAGGGCC
CAGTCCAGGCCCGTGAAAAGGCGTGTGAGGTCGCCAAGAGATCAGGGGAA
AGGCCACGAGGACCAGGGATGA
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