mRNA_P-littoralis_Contig7.214.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig7.214.4 vs. uniprot
Match: A0A6H5JLQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ8_9PHAE) HSP 1 Score: 370 bits (950), Expect = 1.740e-115 Identity = 332/688 (48.26%), Postives = 388/688 (56.40%), Query Frame = 1
Query: 229 RDGSVAREMEISIDSQSFVNLGQLMGSRHGNASATASDDSASTNAPRGRGGLRVAGDLGTSALSDDSE-GEGLCDFDQIFHPGASEQQQEGSGSPSSSSWLGRELYT----RGGDGPD----DXXXXXXXXXSLLPALPSRSSTPG------LDFASISCSNK----------AAAGWAEEDFAETQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIDANMNNSSTVNTH----------------------RAGSFTEEATVSG-----GSSNPPPVPLLRDSWLHVPMGDDNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRAATNALAECGECLVHAVDKAAGLASPPLQQLARAVKGRVEAGANAYTRGQQAVVKAVDNVPQAPVRLWLGRIAGSLMLGAILGGTVAYYALPGPMTGSTSSSAGACSPGGIDATSPWWNTAGGVDDSGAG-VEQGFGDRLNKALFAARVGEAAAQQGLLEEVRNILAATGQSGGISAEQILRQFNAKRFKEASKAWSAAEGNVAGSDPLDPLFFAPPSTPVYPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPFVPHGAAPATECAGGASGSAFCTADGKGSGXXXXXXXGGPSDFDMSRVHAA----RARFFGDGAKQQQQYRRCGGGWVC 2121
R G+ R+ME+S+DSQSFVNLGQLMGSRHG R + TS LSDD + EGL DFDQIFHP A+ SG+ SS GRELY RGG D D S+LPALPSRSSTPG + S S+K A AGW E+DF A + N+ ++ + TH ++G+ AT G GSS P LR+SWLHVP+GDD+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AA AL +CG+CLV V +A LA ++ RAVK V+AGA+A +RGQ+A VKAVD+VPQAPVR+WLGR+A S+++G +LG + AL T S AGA DATSPWW+T G D GAG +Q FGDRL+KALFAAR GEAAAQQGLLE++RNILAATG+SGGISAEQILRQFNAKRFKEASKAWSAAEGNVAGSDPLDPLFFAPP+ PV PS+ +PHGA PAT+CAGGASGS FC+AD SGXXXXXX D R + A R + F DG +Q+ + GGGWVC
Sbjct: 22 RRGNGFRDMEMSVDSQSFVNLGQLMGSRHGXXXXXXXXXXXXXXTTR----TGLEDFACTSFLSDDDDDSEGLRDFDQIFHPAATST----SGARSS----GRELYGQQRHRGGGAADHQHGDGGVLDDDNDSVLPALPSRSSTPGSPRGYSTSNSGNSSSSKPYFIAPAASAAGAGWVEDDFGSGASARRGGGRVGHASCDHRLATGGAP-----------ENNLPQNTDITTHTKTTPAAGITSPEIQPGGSVAQQSGTSQTAATAGGETAASGSS----TPFLRESWLHVPVGDDDEIKSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AAAQALGDCGDCLVRGVGRAGALAKARALEVGRAVKVHVDAGADACSRGQKAAVKAVDSVPQAPVRVWLGRVALSIVVGIVLGSAATFCALRAATTKMGSVCAGA------DATSPWWSTGGAGDSVGAGGADQSFGDRLDKALFAARAGEAAAQQGLLEDMRNILAATGESGGISAEQILRQFNAKRFKEASKAWSAAEGNVAGSDPLDPLFFAPPTAPVNPSASASQQPQPSSSS--------------------------IPHGATPATDCAGGASGSTFCSAD---SGXXXXXX-------DSVRANMAESVRRVKGFRDGGRQEYRRHCGGGGWVC 638
BLAST of mRNA_P-littoralis_Contig7.214.4 vs. uniprot
Match: D7G052_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G052_ECTSI) HSP 1 Score: 223 bits (569), Expect = 7.170e-65 Identity = 143/261 (54.79%), Postives = 161/261 (61.69%), Query Frame = 1
Query: 1354 ILGGTVAYYALPGPMTGSTSSSAGACSPGGIDATSPWWNTAGGVDDSGAG-VEQGFGDRLNKALFAARVGEAAAQQGLLEEVRNILAATGQSGGISAEQILRQFNAKRFKEASKAWSAAEGNVAGSDPLDPLFFAPPSTPVYPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPFVPHGAAPATECAGGASGSAFCTADGKGSGXXXXXXXGGPSDFDMSRVHAA----RARFFGDGAKQQQQYRRCGGGWVC 2121
+LG + AL T + S AGA DATSPWW+T G D GAG +Q FGDRL+KALFAAR GEAAAQQGLLE++RNILAATG+SGGISAEQILRQFNAKRFKEASKAWSAAEGNVAGSDPLDPLFFAPP+ PV PS+ VPHGA PAT+CAGGASGSAFC+AD XXX D R + A RA+ F DG +Q+ + GGGWVC
Sbjct: 1 MLGSAATFCALRAATTKTGSVCAGA------DATSPWWSTGGAGDSVGAGGADQSFGDRLDKALFAARAGEAAAQQGLLEDMRNILAATGESGGISAEQILRQFNAKRFKEASKAWSAAEGNVAGSDPLDPLFFAPPTAPVNPSASSSQQPQPSSSS--------------------------VPHGATPATDCAGGASGSAFCSAD--------SXXXXXXXXXDSVRANMAESVRRAKGFRDGGRQEYRRHCGGGGWVC 221
BLAST of mRNA_P-littoralis_Contig7.214.4 vs. uniprot
Match: D7G053_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G053_ECTSI) HSP 1 Score: 138 bits (348), Expect = 1.820e-31 Identity = 176/413 (42.62%), Postives = 212/413 (51.33%), Query Frame = 1
Query: 229 RDGSVAREMEISIDSQSFVNLGQLMGSRHGNASATASDDSASTNAPRGRGGLRVAGDLG-TSALSDDSE-GEGLCDFDQIFHPGASEQQQEGSGSPSSSSWL-GRELYT----RGGDGPD----DXXXXXXXXXSLLPALPSRSSTPGLD----------------FASISCSNKAAAGWAEEDFAETQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIDANMNNSSTVNTHR------------------AGSFTEE------ATVSGG---SSNPPPVPLLRDSWLHVPMGDDNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRAATNALAECGECLVHAVDKAAGLASPPLQQLARAVKGRVEAGANAYTRGQQAVVKAVDNVPQAP 1305
R G+ R+ME+S+DSQSFVNLGQLMGSRHG R GL DL TS LSDD + EGL DFDQIFHP A+ +S +W GRELY RGG D D S+LPALPSRSSTPG + S ++ A AGW EEDF A ++ N+ ++ TH GS T++ A +GG +++ P LR+SWLHVP+GD++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AA AL +CG+CLV V +A LA + RAVK +VEAGA+A +RGQ+A VKAVD+VPQAP
Sbjct: 59 RRGNGFRDMEMSVDSQSFVNLGQLMGSRHGXXXXXXXXXXXXX--XXXRTGLD---DLACTSFLSDDDDDSEGLRDFDQIFHPAATS---------TSGAWSSGRELYGQQRHRGGGAVDHQHGDGGAFDDDNDSVLPALPSRSSTPGSPRGYLTSNSGNSSSSKPYFVASAASAAGAGWVEEDFGSGAGARRGGGRVGHASCDHRLATGG-----------ALENNLTQNTDTTTHTKATAPAAAAAITSPEIQPGGSLTQQSGTSRTAAAAGGEIAAASGSSTPFLRESWLHVPIGDEDEIKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AAAQALGDCGDCLVRGVGRAGALAKARALEFGRAVKVQVEAGADACSRGQKAAVKAVDSVPQAP 444 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.214.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig7.214.4 >prot_P-littoralis_Contig7.214.4 ID=prot_P-littoralis_Contig7.214.4|Name=mRNA_P-littoralis_Contig7.214.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=653bp MSTEQTIYNYQNDDEAGGSIARDGSVAREMEISIDSQSFVNLGQLMGSRHback to top mRNA from alignment at P-littoralis_Contig7:848142..851564- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig7.214.4 ID=mRNA_P-littoralis_Contig7.214.4|Name=mRNA_P-littoralis_Contig7.214.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=3423bp|location=Sequence derived from alignment at P-littoralis_Contig7:848142..851564- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig7:848142..851564- >mRNA_P-littoralis_Contig7.214.4 ID=mRNA_P-littoralis_Contig7.214.4|Name=mRNA_P-littoralis_Contig7.214.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1959bp|location=Sequence derived from alignment at P-littoralis_Contig7:848142..851564- (Pylaiella littoralis U1_48)back to top |