mRNA_P-littoralis_Contig7.141.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.141.1
Unique NamemRNA_P-littoralis_Contig7.141.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:639057..640851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size604
Hectar predicted targeting categoryother localisation
Exons3
Cds size555
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791453.9297497-CDS-P-littoralis_Contig7:639056..6390901680791453.9297497-CDS-P-littoralis_Contig7:639056..639090Pylaiella littoralis U1_48CDSP-littoralis_Contig7 639057..639090 -
1680791453.9409382-CDS-P-littoralis_Contig7:639548..6397161680791453.9409382-CDS-P-littoralis_Contig7:639548..639716Pylaiella littoralis U1_48CDSP-littoralis_Contig7 639549..639716 -
1680791453.9542458-CDS-P-littoralis_Contig7:640450..6408031680791453.9542458-CDS-P-littoralis_Contig7:640450..640803Pylaiella littoralis U1_48CDSP-littoralis_Contig7 640451..640803 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791453.9678428-UTR-P-littoralis_Contig7:640803..6408511680791453.9678428-UTR-P-littoralis_Contig7:640803..640851Pylaiella littoralis U1_48UTRP-littoralis_Contig7 640804..640851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.141.1prot_P-littoralis_Contig7.141.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 639057..640803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.141.1

>prot_P-littoralis_Contig7.141.1 ID=prot_P-littoralis_Contig7.141.1|Name=mRNA_P-littoralis_Contig7.141.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp
MPRPDESASTKTVRRRQRRFSGKKDKLRPSEHHGHGGRGSGSFLATGVNF
GAISWLWHSTIGALSRSIPRVDFGGKVGREGAGRWADDGTGVLSSTEEAA
VFALMLGVAVTASLFICRQRNGDAKQTHEQRPAGGEGGCKSVDKDGALEG
KARKDGHSHHPDELRNFDRTDSRIKPAEVEKASGE
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mRNA from alignment at P-littoralis_Contig7:639057..640851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.141.1 ID=mRNA_P-littoralis_Contig7.141.1|Name=mRNA_P-littoralis_Contig7.141.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1795bp|location=Sequence derived from alignment at P-littoralis_Contig7:639057..640851- (Pylaiella littoralis U1_48)
CTGTAATGAATACAAATTGCTCTGTGGAAGCTAAAGGGAAGACTCGCGAT
GCCCAGACCGGATGAAAGCGCCTCTACGAAGACGGTACGCCGTCGGCAGC
GGCGGTTCAGCGGGAAGAAGGACAAGCTTCGTCCTTCTGAACATCATGGC
CACGGCGGACGTGGATCCGGCAGCTTCCTTGCAACCGGCGTAAACTTCGG
GGCGATTTCCTGGCTCTGGCACTCCACGATAGGCGCCTTGAGCCGGTCAA
TCCCTCGGGTGGACTTTGGAGGGAAAGTAGGACGAGAAGGAGCAGGACGG
TGGGCGGATGATGGGACGGGGGTGTTGTCGTCTACAGAGGAGGCGGCGGT
TTTTGCGCTAATGCTCGGTGTTGCTGTGACCGCTAGCTTGTTCATCTGCA
GGTATGACTTCACGAAGGACTACTACATTCTTGTACTGAAGACGCTTTCT
TATCCTAACAAGAGATAATTCATGCGGGGAGGTTTTGCCCGCACTGTTGT
ACTGCTGTCGTGCAACGTTCTTCATGGGAAAGGAGGGTCCCAAGCGTTTT
GAAACTTTGCTTTACAGCACAGCATCATACTCAAATCATGCGCAACACTT
ACTCCAGTCATACGCGCGTTGAAATTCTTCCAAAAGCTACACAGAGTAGA
TTTCACCCACTTCAAACATAACTAAAGGTACAAGTTGGTGCCCAGAATAC
ATGAGATGTAAACGCACACACACGCACACAAACACACAGCAGTTCATCGC
GTGAATCCTCGGCATTCTTCAAGCAAATACCGTTCGTCCCGCCGCAGCTG
GGCAGCGCTTGTTGAAGCAACCGACTTTTTCGCTTGAGACAGAAAGCGGC
GCCCATTTTTTGTCTCCTATTCATCTGCGTTCGCATACTGTGGCACTTAT
CCTCCACCTTGAAAAGCCGTACTTCGACGCGTCGAGTTGTCACGAACTCT
TGGACGGAAACAACCCACTAGCAGCAGTAAATTACACTTCGTATTAGTAA
CAAACTTCTGCTTTCATCCACAACGTAGCTCCATTGGACGAATGGACCCT
CGGACGAAAACAACCCACTAACAGCAGTAATATAGTAACAAATTAATGCT
TTCATTCACAACGTATCTCCATTGGACGGCACTAGACAAAGAAATGGAGA
TGCCAAGCAGACGCATGAACAGCGGCCGGCAGGGGGAGAAGGAGGGTGCA
AGAGTGTTGACAAAGATGGGGCACTCGAGGGGAAGGCGCGAAAGGACGGC
CATAGCCATCACCCCGACGAGCTCCGCAATTTCGACAGGACGGACAGCAG
GATGTACGTAAACGGTAGCCTTGTGTTGTCGTTCATTGGCTCGTGAGTCG
ACCTTCTTCCAGTTTGTTTTGTGCTTCGTATAATTCTTACGGTCATCAAT
GTATTCGCTTCTCTCTCTAGACGAGAAGGTAGAGATGATCAACAACAAGC
GCAAGGTGTAAACATCTACCTGTACATACCTAATTAATAGTCGCAGATCC
CAAGAGGTTATCAGACTCAACGTGACAACTTGGAGTTCATCGTGTGTGAC
GCACAAACATCATGAGGGGAGTGTATGGTCTGTGTGTACGCTGTGTTTTC
GGATACCATCTTCGTTGCCGCCACCCCGAGCAGCGATCGCCCATGTGCGA
AACAGCCTCTTGCTTTCTATACTGAACGTATTCCGGCTAGAATGGAAAAA
AAAAAAATCACCCATGTATGGAATCAGATCGTACGCGAACGCCTGCGTCG
CAATTGTACAGAAAACCCGCGGAAGTTGAGAAAGCGTCGGGGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:639057..640851-

>mRNA_P-littoralis_Contig7.141.1 ID=mRNA_P-littoralis_Contig7.141.1|Name=mRNA_P-littoralis_Contig7.141.1|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig7:639057..640851- (Pylaiella littoralis U1_48)
ATGCCCAGACCGGATGAAAGCGCCTCTACGAAGACGGTACGCCGTCGGCA
GCGGCGGTTCAGCGGGAAGAAGGACAAGCTTCGTCCTTCTGAACATCATG
GCCACGGCGGACGTGGATCCGGCAGCTTCCTTGCAACCGGCGTAAACTTC
GGGGCGATTTCCTGGCTCTGGCACTCCACGATAGGCGCCTTGAGCCGGTC
AATCCCTCGGGTGGACTTTGGAGGGAAAGTAGGACGAGAAGGAGCAGGAC
GGTGGGCGGATGATGGGACGGGGGTGTTGTCGTCTACAGAGGAGGCGGCG
GTTTTTGCGCTAATGCTCGGTGTTGCTGTGACCGCTAGCTTGTTCATCTG
CAGACAAAGAAATGGAGATGCCAAGCAGACGCATGAACAGCGGCCGGCAG
GGGGAGAAGGAGGGTGCAAGAGTGTTGACAAAGATGGGGCACTCGAGGGG
AAGGCGCGAAAGGACGGCCATAGCCATCACCCCGACGAGCTCCGCAATTT
CGACAGGACGGACAGCAGGATAAAACCCGCGGAAGTTGAGAAAGCGTCGG
GGGAG
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