mRNA_P-littoralis_Contig7.140.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.140.1
Unique NamemRNA_P-littoralis_Contig7.140.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig7.140.1 vs. uniprot
Match: D7FS10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS10_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 1.390e-86
Identity = 179/300 (59.67%), Postives = 206/300 (68.67%), Query Frame = 1 
Query:   16 GAARAETAAAADTMSDRGVGRGIRGSGGGSGN------GVIAFGRGGPRASIFDRIADVVFNEEQKEQNPVDAVAVRSKLEEEFRVSFREGAMGMTLSMDPDSRNAVVGNIVEQGQAFRAGVQTDDLVIGVGEQVVSSYGTVLAFMNIMGRPIELHFRKAGPSAGKGGGXXXXXPISTCDGGGH-------AAVPEGGN----GGLSKSRPVPVRGSGDRAKGDSLSKNVKGLGRGAKSGGVNAPISXXXXXXXXXXXXXXXLDREVASSDSNFSQKMEHGVVVTKYDTKGAATQRVLFL 864
            G  R   +A A + + R VGRG+R  G           GV+  G G  RASIFDRIADVVFNEEQK+Q+PVDA+AVRS+LE+EFRVSFREGAMGMTLSMDPD+R+A+VG IVEQGQAFRAG+QTDDLVIGVGE  VSSYGTVLAFMNIMGRPIELHFRK+   +G G  XXXXX IS              AA PEG      GG+SKS P+  RG+ +  +GDSLS+ +KG   G KS G  AP S               L REVASSD+ FS+KMEHGVVVTKY  KGAA QR+L+L
Sbjct:  116 GGLRDTASAEAASTTRREVGRGLRSGGSXXXXXXXXXXGVVPLGGGARRASIFDRIADVVFNEEQKKQDPVDAIAVRSELEDEFRVSFREGAMGMTLSMDPDTRDAIVGKIVEQGQAFRAGIQTDDLVIGVGENTVSSYGTVLAFMNIMGRPIELHFRKSDKGSGDGXXXXXXXXISAXHXXXXXXXXXXSAAKPEGFRATKAGGVSKSGPI--RGNLEGTRGDSLSRKLKGAA-GVKSAGGIAPRSPISPRSQGKVSGFSGLGREVASSDAGFSEKMEHGVVVTKYGKKGAAAQRLLYL 412
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BLAST of mRNA_P-littoralis_Contig7.140.1 vs. uniprot
Match: A0A835YTV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.580e-10
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 1 
Query:  196 EQNPVDAVAVRSKLEEEFRVSFREGAMGMTLSMDPDSRNAVVGNIVEQGQAFRAGVQTDDLVIGVGEQVVSS-----------------YGTVLAFMNIMGRPIELHFRK 474
            E   VD  A+R  L +EF V F EG++GM+L +   +  A V  +VE+GQA   GV+  D+V  VG+ V +S                 YGT LAF+NI+GRP+ L F+K
Sbjct: 1207 EDEIVDWSALRRALPKEFSVEFNEGSIGMSL-VRTAADTAEVSKVVERGQAHTGGVKAGDVVSAVGDSVATSMNXXXXXXXXXXXXXXXYGTTLAFLNILGRPVTLWFQK 1315
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS10_ECTSI1.390e-8659.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTV8_9STRA5.580e-1040.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:636196..638987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FS10
Model size866
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue2.27e-87
EggNOG OGs2E84P@1|root,2SEN4@2759|Eukaryota
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-12_006920.1
Cds size864
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.140.1prot_P-littoralis_Contig7.140.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 636197..638987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791453.8243268-CDS-P-littoralis_Contig7:636196..6362651680791453.8243268-CDS-P-littoralis_Contig7:636196..636265Pylaiella littoralis U1_48CDSP-littoralis_Contig7 636197..636265 -
1680791453.8391452-CDS-P-littoralis_Contig7:636480..6366181680791453.8391452-CDS-P-littoralis_Contig7:636480..636618Pylaiella littoralis U1_48CDSP-littoralis_Contig7 636481..636618 -
1680791453.8513637-CDS-P-littoralis_Contig7:636934..6370611680791453.8513637-CDS-P-littoralis_Contig7:636934..637061Pylaiella littoralis U1_48CDSP-littoralis_Contig7 636935..637061 -
1680791453.864534-CDS-P-littoralis_Contig7:637559..6377321680791453.864534-CDS-P-littoralis_Contig7:637559..637732Pylaiella littoralis U1_48CDSP-littoralis_Contig7 637560..637732 -
1680791453.8761032-CDS-P-littoralis_Contig7:638266..6383961680791453.8761032-CDS-P-littoralis_Contig7:638266..638396Pylaiella littoralis U1_48CDSP-littoralis_Contig7 638267..638396 -
1680791453.889836-CDS-P-littoralis_Contig7:638760..6389871680791453.889836-CDS-P-littoralis_Contig7:638760..638987Pylaiella littoralis U1_48CDSP-littoralis_Contig7 638761..638987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.140.1

>prot_P-littoralis_Contig7.140.1 ID=prot_P-littoralis_Contig7.140.1|Name=mRNA_P-littoralis_Contig7.140.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=288bp
PEASSGAARAETAAAADTMSDRGVGRGIRGSGGGSGNGVIAFGRGGPRAS
IFDRIADVVFNEEQKEQNPVDAVAVRSKLEEEFRVSFREGAMGMTLSMDP
DSRNAVVGNIVEQGQAFRAGVQTDDLVIGVGEQVVSSYGTVLAFMNIMGR
PIELHFRKAGPSAGKGGGGPGGGPISTCDGGGHAAVPEGGNGGLSKSRPV
PVRGSGDRAKGDSLSKNVKGLGRGAKSGGVNAPISPISPRSSSKVSKLGR
LDREVASSDSNFSQKMEHGVVVTKYDTKGAATQRVLFL
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mRNA from alignment at P-littoralis_Contig7:636196..638987-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.140.1 ID=mRNA_P-littoralis_Contig7.140.1|Name=mRNA_P-littoralis_Contig7.140.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2792bp|location=Sequence derived from alignment at P-littoralis_Contig7:636196..638987- (Pylaiella littoralis U1_48)
CCAGAAGCCTCCTCCGGTGCCGCCAGAGCGGAGACTGCTGCTGCTGCTGA
CACCATGAGCGACCGGGGGGTTGGGCGCGGTATTCGCGGCAGCGGCGGTG
GGAGCGGGAACGGGGTCATCGCGTTCGGCCGGGGTGGGCCGAGGGCGTCC
ATCTTCGATCGGATCGCGGACGTCGTGTTCAACGAGGAGCAGAAGGAGCA
GAACCCTGTCGATGCCGTCGCTGTCAGGTCGGTTCGGTTTCATACGTTTC
AGCTTTTATGGTTTCTACAACTCAGAACCTAGTACAGTCAGTTTGTGCCT
ATGCATGTTTACATCGGGAAAAATCGGGAGCTAGCTTGGAGGACGGAGCA
GGGGCGGGGGAGTGGGCGTATCTTCCGAATCCGACCTATCCGTCTTCCTT
TCAGTCGACCTTCAACATCTCTTCCTGACTCGGGAGTAAATTTTGAGTTC
CGAATACTGCTGTTGCTTCGTGAGCAAATAACTTCGTGAATTCGAACCTG
GGGCTATAAATCTACAACGATCATGTGGGAAAACCGCACTACATTATCCT
TCTCCCCACCCCTCCCCCTGTGTCGCCGATGACCGACTCAGGAGCAAGCT
GGAGGAAGAGTTTCGGGTCTCGTTTCGAGAAGGCGCGATGGGTATGACAC
TGTCCATGGACCCGGACAGCAGGAATGCCGTGGTCGGGAATATTGTCGAG
CAGGGACAAGCGTTTCGAGCGGTGAGAGACAGACAGACAGACGTGAGAAA
AGAAGAAGTTTGCGACGGCCTCCTCGCAAGAAAGCTCCCTACGAGAAACC
GAGGCTGAGATGTCCAAACCGACAAGGGCTTGCTACAGCCCCTGTATATA
AAGAGTCGTAGGCCATCACCAACCCTCTTGGTGTGATCGTGTGGGGGCTC
ATTTCCTTCTAGGGTGTCTTTTGTATACGGTCAGGGGTGGTGGCGCCAGA
TTCCCTTGCCCGTGTGTTGAAAATGACCATTTGAAGTTCGGAGCAGAGCG
GCAGCTAGCAATGGTGCTACACACACGTTCTTGACAGACGTGTTTTCCAC
AAAGAGCGGGTAAACTGCTTCGGCGGCATGGTATTTTGCCCAGGCAAGAC
GGAAAGAAATCACACAAAAAAACGCGAGCAGTTAGGTTTAGGGTAAAGGT
GACGCAACAACAAACCCGTAGGAACATGGAACATGATGCCCCCTCGGCCA
ACCCCTCATTGCACCATAGCCGTTTTATACACAATACCTGGGATGATGAA
CATAGGGGGTCCAGACGGACGACTTAGTGATCGGGGTGGGCGAGCAAGTT
GTCAGCAGCTACGGCACGGTGTTGGCGTTCATGAACATCATGGGTCGTCC
GATAGAGCTTCACTTCCGAAAGGCTGGTCCATCCGCTGGCAAAGGTGGCG
GCGGCCCCGGTGGCGGCCCGATCTCGACGTGAGTTGCATATCAAAGAGGT
CGATGAATCTGATCCGTTTCCTTTCTCTCGTTGTTCACTCATTCGAACGC
CAGCGGAGAGAGGGGTGGGTACACTAATAGTATCCGTAATGTTAGACTTC
TGTCCTTCACATGGAGTGTAAATACTCACAAAGGCACACACACAGGCACA
CACATAGACAAACACACACCCACGTGCACAGGAAGGTTGCGGGCTTACCC
TCGCGAGGAAGAGGGATGGGGGAGGGGGCTCTATACTGGTATCGTCGGTG
AAAAAGGTAAAACACATCAGTCCGTGGAACATTGAAGATACCAGGAACTT
CATAGCCTTTTCGTCCCATCGTGTCCACCCTCCTCCATCTCGTGGCCTTC
CTTCAAATTTATATCACTAGTCAAACTGCCGTGCTGTAGCGTTAGACCGA
TGGCGACTGTATTTTTATGCTGGGAGCTTTTCGTTTCAAAATTACTGCAC
GTCAACTGCTGTCCTTACACCAGCAGTTGTGACGGGGGCGGGCATGCGGC
CGTACCGGAAGGTGGCAATGGCGGCTTGTCTAAATCTAGGCCGGTGCCGG
TCCGCGGAAGCGGCGACCGGGCGAAGGGAGACAGCTTGTCGAAGAACGTC
AAGGTACTCAACAAGATCAGGGCTATCGTTTTTTTTAGCGTACTACAGTA
GCGATAGGGCATCTCGCAGGGTATTTACACGACCGTCAGTGTTTTAGTGA
CTGTAGAAGGCAAGCAAGTAGCTCCTGCCTCTCAGTGGTCGATCTTTGTG
TTTTTGTTTTTTCTGTAACCAAACATTTCCAAGAACGACGCGATTACAGT
CAAACTCAAAATGAAGACACCATTAATGTTGTTGTCGTTGTCGCCGGCGC
ACCCCACGAAACCCGTCTGCCCAACGTACTCGACGAACGCGATGGCGAAC
GATCAACTTACCGCTACAGGGACTAGGAAGAGGGGCAAAGTCCGGAGGAG
TGAACGCACCCATATCGCCGATTTCTCCGCGAAGCTCGAGCAAGGTGTCG
AAGCTGGGCCGACTAGACCGGGAGGTGGCAAGCTCTGACTCCAACTTCAG
CCAAAAGGTGGAGGGAGTGGGGAGTGGGGATGGGGGGAGAGGCACAGCCA
CGTACACTAGTTGCGGTTCAACTCTACAACAGCAAATCTTGCTTTAAACT
GTTCCTTCAAGGTGCCTTTCCTAGATCTCCCTTTCCTGACTCCACACTGA
TGTTGTAGGTTGCCTTGAAATCTCAATCACATCACGTTGCCCCGGTTTCT
GTTTTGGTGTCCGTTCGAGAAGATGGAACACGGGGTGGTAGTGACAAAGT
ACGATACGAAGGGCGCAGCGACCCAGCGGGTGCTGTTTCTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:636196..638987-

>mRNA_P-littoralis_Contig7.140.1 ID=mRNA_P-littoralis_Contig7.140.1|Name=mRNA_P-littoralis_Contig7.140.1|organism=Pylaiella littoralis U1_48|type=CDS|length=864bp|location=Sequence derived from alignment at P-littoralis_Contig7:636196..638987- (Pylaiella littoralis U1_48)
CCAGAAGCCTCCTCCGGTGCCGCCAGAGCGGAGACTGCTGCTGCTGCTGA
CACCATGAGCGACCGGGGGGTTGGGCGCGGTATTCGCGGCAGCGGCGGTG
GGAGCGGGAACGGGGTCATCGCGTTCGGCCGGGGTGGGCCGAGGGCGTCC
ATCTTCGATCGGATCGCGGACGTCGTGTTCAACGAGGAGCAGAAGGAGCA
GAACCCTGTCGATGCCGTCGCTGTCAGGAGCAAGCTGGAGGAAGAGTTTC
GGGTCTCGTTTCGAGAAGGCGCGATGGGTATGACACTGTCCATGGACCCG
GACAGCAGGAATGCCGTGGTCGGGAATATTGTCGAGCAGGGACAAGCGTT
TCGAGCGGGGGTCCAGACGGACGACTTAGTGATCGGGGTGGGCGAGCAAG
TTGTCAGCAGCTACGGCACGGTGTTGGCGTTCATGAACATCATGGGTCGT
CCGATAGAGCTTCACTTCCGAAAGGCTGGTCCATCCGCTGGCAAAGGTGG
CGGCGGCCCCGGTGGCGGCCCGATCTCGACTTGTGACGGGGGCGGGCATG
CGGCCGTACCGGAAGGTGGCAATGGCGGCTTGTCTAAATCTAGGCCGGTG
CCGGTCCGCGGAAGCGGCGACCGGGCGAAGGGAGACAGCTTGTCGAAGAA
CGTCAAGGGACTAGGAAGAGGGGCAAAGTCCGGAGGAGTGAACGCACCCA
TATCGCCGATTTCTCCGCGAAGCTCGAGCAAGGTGTCGAAGCTGGGCCGA
CTAGACCGGGAGGTGGCAAGCTCTGACTCCAACTTCAGCCAAAAGATGGA
ACACGGGGTGGTAGTGACAAAGTACGATACGAAGGGCGCAGCGACCCAGC
GGGTGCTGTTTCTG
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