mRNA_P-littoralis_Contig1178.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1178.5.1
Unique NamemRNA_P-littoralis_Contig1178.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1178.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1178contigP-littoralis_Contig1178:31348..31766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size419
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789492.458112-UTR-P-littoralis_Contig1178:31347..313831680789492.458112-UTR-P-littoralis_Contig1178:31347..31383Pylaiella littoralis U1_48UTRP-littoralis_Contig1178 31348..31383 +
1680789492.4842994-UTR-P-littoralis_Contig1178:31737..317661680789492.4842994-UTR-P-littoralis_Contig1178:31737..31766Pylaiella littoralis U1_48UTRP-littoralis_Contig1178 31738..31766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789492.4732947-CDS-P-littoralis_Contig1178:31383..317371680789492.4732947-CDS-P-littoralis_Contig1178:31383..31737Pylaiella littoralis U1_48CDSP-littoralis_Contig1178 31384..31737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1178.5.1prot_P-littoralis_Contig1178.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1178 31384..31737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1178.5.1

>prot_P-littoralis_Contig1178.5.1 ID=prot_P-littoralis_Contig1178.5.1|Name=mRNA_P-littoralis_Contig1178.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MSGTVWQQPAFDLVLSAQYTVESSVSKHSRPWGLRVCARVCAVSACWTKA
YCKKEIVSRKKVSACTQTCLPLRLLNIFIFSNYLSMHPTVRGRRFDGALR
RLDQIERRLLPDTPRYM*
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mRNA from alignment at P-littoralis_Contig1178:31348..31766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1178.5.1 ID=mRNA_P-littoralis_Contig1178.5.1|Name=mRNA_P-littoralis_Contig1178.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=419bp|location=Sequence derived from alignment at P-littoralis_Contig1178:31348..31766+ (Pylaiella littoralis U1_48)
CAGGTCCATATTCCTTGAGGGTATCGATATCTACATATGTCTGGAACTGT
CTGGCAGCAACCCGCTTTCGATTTGGTCCTGTCTGCGCAATACACTGTCG
AATCTTCGGTCTCGAAACACTCCCGGCCATGGGGTCTGCGTGTGTGTGCG
CGTGTGTGCGCTGTCTCTGCCTGCTGGACAAAGGCATACTGTAAAAAAGA
AATAGTTAGTCGGAAGAAAGTCAGCGCCTGCACACAAACATGTCTACCTC
TGAGATTATTGAATATTTTCATATTTTCAAACTATCTGTCGATGCACCCC
ACAGTCCGCGGCCGAAGATTCGATGGTGCTCTGCGTAGACTGGACCAAAT
CGAACGCAGATTGCTGCCAGATACTCCAAGATATATGTAGATATCGATAT
CCTCAAGAAATTTGGACCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1178:31348..31766+

>mRNA_P-littoralis_Contig1178.5.1 ID=mRNA_P-littoralis_Contig1178.5.1|Name=mRNA_P-littoralis_Contig1178.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig1178:31348..31766+ (Pylaiella littoralis U1_48)
ATGTCTGGAACTGTCTGGCAGCAACCCGCTTTCGATTTGGTCCTGTCTGC
GCAATACACTGTCGAATCTTCGGTCTCGAAACACTCCCGGCCATGGGGTC
TGCGTGTGTGTGCGCGTGTGTGCGCTGTCTCTGCCTGCTGGACAAAGGCA
TACTGTAAAAAAGAAATAGTTAGTCGGAAGAAAGTCAGCGCCTGCACACA
AACATGTCTACCTCTGAGATTATTGAATATTTTCATATTTTCAAACTATC
TGTCGATGCACCCCACAGTCCGCGGCCGAAGATTCGATGGTGCTCTGCGT
AGACTGGACCAAATCGAACGCAGATTGCTGCCAGATACTCCAAGATATAT
GTAG
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