mRNA_P-littoralis_Contig7.105.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.105.2
Unique NamemRNA_P-littoralis_Contig7.105.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig7.105.2 vs. uniprot
Match: A0A7S2TQT0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQT0_9EUKA)

HSP 1 Score: 114 bits (285), Expect = 5.820e-27
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 2 
Query:  650 GFFGSFDDSRYWDYAFRFTQRQDIGNQCRECKRPFSTLNEEIAVRRGGRIELRYHKECFSMVADPRSQPASSANVGKFVRSLEGTVAPEELYRKMRTRGHW 952
            G   S  +S+YW + +R    +D+G+ CRECKRP + + E IA+RRGGRIE+RYH+ CFS  +DPR+Q  +S   GK+VR + GT AP   Y+KMRT  HW
Sbjct:   21 GAKASLAESQYWQHRYRPCVARDLGHTCRECKRPLTKIGETIAIRRGGRIEMRYHEACFSGESDPRTQKKASHKQGKWVRCVAGTKAPLGKYKKMRTTSHW 121
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BLAST of mRNA_P-littoralis_Contig7.105.2 vs. uniprot
Match: A0A8J5X274_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X274_DIALT)

HSP 1 Score: 111 bits (277), Expect = 6.500e-26
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  668 DDSRYWDYAFRFTQRQDIGNQCRECKRPFSTLNEEIAVRRGGRIELRYHKECFSMVADPRSQPASSANVGKFVRS-LEGTVAPEELYRKMRTRGHW 952
            +D+RYWD+AFR  ++ D+G+ CREC++PF+ L E +A RRG R+ LRYH++CFS +ADPRSQP    N GK+  S      AP E + KMRT  H+
Sbjct:    5 NDTRYWDFAFRAVEKSDLGHVCRECRQPFARLGEPLAERRGARLALRYHRDCFSGLADPRSQPRGPFNEGKWAGSHAVSAAAPAEPFHKMRTAAHF 100
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BLAST of mRNA_P-littoralis_Contig7.105.2 vs. uniprot
Match: A0A8J2F2Y4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2F2Y4_9DINO)

HSP 1 Score: 107 bits (266), Expect = 8.250e-22
Identity = 65/161 (40.37%), Postives = 87/161 (54.04%), Query Frame = 2 
Query:  581 TLRRISASTARAMHAASSSTSGPGF--------FGSFDDSRYWDYAFRFTQRQDIGNQCRECKRPFSTLNEEIAVRRGGRIELRYHKECFSMVADPRSQPASSANVGKFVRSLEGTVAPEELYRKMRTRGHW*NELAWLTGCGKMA------AHSVIGVDT 1021
            T RR + S A ++H  S + SG  F         G+ D++ YWDY  R  QR D+G+ CREC++PF+ + E I  RRG RI  RYH ECFS  ADPRSQ  SS + G+     +   AP+  + KMRT+ H+       +   +MA      A S  GVDT
Sbjct:  131 TTRRSTWSAAPSLHP-SVAASGKAFSLACSETTIGAGDETMYWDYQHRLAQRSDLGHMCRECRKPFTQVGEPITERRGSRISTRYHAECFSGYADPRSQARSSTHEGRLA-GTQFEAAPDGPFSKMRTQSHFSGGTTGKSVGAQMAMGRLSFARSSRGVDT 289
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BLAST of mRNA_P-littoralis_Contig7.105.2 vs. uniprot
Match: A0A7S1LEE0_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LEE0_NEODS)

HSP 1 Score: 94.7 bits (234), Expect = 5.860e-20
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 2 
Query:  680 YWDYAFRFTQRQDIGNQCRECKRPFSTLNEEIAVRRGGRIELRYHKECFSMVADPRSQPASSANVGKFVRSLEGTVAPEELYRKMRTRGHW 952
            YW    R  + +D+G+ C+ECKRPF  + E + VRRGGRIELRYH++C+S  ADPR+Q +SS N  +   +L    AP   +RKMRT  H+
Sbjct:   18 YWASQARSCEPRDVGHPCKECKRPFQRVGEPLMVRRGGRIELRYHEQCYSGSADPRTQASSSFNSSQHAAALSA-AAPALPFRKMRTSSHF 107
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BLAST of mRNA_P-littoralis_Contig7.105.2 vs. uniprot
Match: A0A7S1CF73_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CF73_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.730e-20
Identity = 48/113 (42.48%), Postives = 64/113 (56.64%), Query Frame = 2 
Query:  614 AMHAASSSTSGPGFFGSFDDSRYWDYAFRFTQRQDIGNQCRECKRPFSTLNEEIAVRRGGRIELRYHKECFSMVADPRSQPASSANVGKFVRSLEGTVAPEELYRKMRTRGHW 952
            A H   S        G+ D + YWD+A R  +R D+G++CRECK PF+ + E +  RRG R+ +RYH ECFS  ADPRSQ  SS +VG    S       ++   KMRT  H+
Sbjct:  129 AGHTVVSMACSEATIGAGDATGYWDFAHRSVERSDLGHRCRECKMPFTAIGEPLTERRGARVSMRYHAECFSGYADPRSQAGSSHHVGHLAGSQLAAAPSDKAGSKMRTTQHF 241
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BLAST of mRNA_P-littoralis_Contig7.105.2 vs. uniprot
Match: A0A7S4UV52_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UV52_9DINO)

HSP 1 Score: 92.4 bits (228), Expect = 6.920e-17
Identity = 47/110 (42.73%), Postives = 61/110 (55.45%), Query Frame = 2 
Query:  623 AASSSTSGPGFFGSFDDSRYWDYAFRFTQRQDIGNQCRECKRPFSTLNEEIAVRRGGRIELRYHKECFSMVADPRSQPASSANVGKFVRSLEGTVAPEELYRKMRTRGHW 952
            A S +T G G     DD+ YWD+  R    +D+G +CREC+RPF+ L   +  RRG RI +RYH ECFS  ADPRSQ  SS   G+   +        +   KMRT  H+
Sbjct:  186 ACSEATIGAG-----DDTGYWDFQHRTVVAKDLGQRCRECRRPFAQLGAPLTERRGARISMRYHGECFSGFADPRSQSKSSHFEGRLAGTQMDAAPANKAGSKMRTSSHF 290
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BLAST of mRNA_P-littoralis_Contig7.105.2 vs. uniprot
Match: A0A3P3YIB7_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YIB7_PLABS)

HSP 1 Score: 76.6 bits (187), Expect = 9.560e-12
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 2 
Query:  605 TARAMHAASSSTSG--PGFFGSFDDSRYWDYAFRFTQRQDIGNQCRECKRPFSTLNEEIAVRRGGRIELRYHKECFSMVADPRSQPASSANVGKF 883
            TAR   A     SG  P     + D  YW +  R  +  D+G+ CRECK+P + L + IA RRG R+++RYH+ CFS   DPRSQ   SA + K+
Sbjct:   41 TARKKAAPVRKPSGQRPVHVAKYGDEDYWSFQVRECRPADLGHMCRECKKPITALGDLIAERRGARVQMRYHRACFSDDGDPRSQ--DSAKLSKW 133
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BLAST of mRNA_P-littoralis_Contig7.105.2 vs. uniprot
Match: A0A0L0DNU8_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DNU8_THETB)

HSP 1 Score: 55.1 bits (131), Expect = 1.410e-5
Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 2 
Query:  674 SRYWDYAFRFTQRQDIGNQCRECKRPFSTLNEEIAVRRGGRIELRYHKECFSMVADPRSQPASS 865
            S YW    R    +   + CRECK  + T   +  +R G RI+LRYH+ECFS  ADPRSQ  SS
Sbjct:   56 SSYWRIE-RGRVAEGTRHLCRECK-AYITKGSKYIIRHGARIQLRYHQECFSGDADPRSQAGSS 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.105.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7S2TQT0_9EUKA5.820e-2750.50Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A8J5X274_DIALT6.500e-2651.04Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A8J2F2Y4_9DINO8.250e-2240.37Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7S1LEE0_NEODS5.860e-2048.35Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A7S1CF73_9STRA6.730e-2042.48Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S4UV52_9DINO6.920e-1742.73Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A3P3YIB7_PLABS9.560e-1242.11Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0L0DNU8_THETB1.410e-546.88Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:494717..497526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog227086.JGI_V11_126617
Model size1361
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.82e-22
EggNOG OGs2E6M4@1|root,2SDAD@2759|Eukaryota
Cds size831
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791452.2396212-UTR-P-littoralis_Contig7:494716..4948401680791452.2396212-UTR-P-littoralis_Contig7:494716..494840Pylaiella littoralis U1_48UTRP-littoralis_Contig7 494717..494840 +
1680791452.2878826-UTR-P-littoralis_Contig7:496112..4962631680791452.2878826-UTR-P-littoralis_Contig7:496112..496263Pylaiella littoralis U1_48UTRP-littoralis_Contig7 496113..496263 +
1680791452.3064866-UTR-P-littoralis_Contig7:497271..4975261680791452.3064866-UTR-P-littoralis_Contig7:497271..497526Pylaiella littoralis U1_48UTRP-littoralis_Contig7 497272..497526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791452.2550583-CDS-P-littoralis_Contig7:494840..4955021680791452.2550583-CDS-P-littoralis_Contig7:494840..495502Pylaiella littoralis U1_48CDSP-littoralis_Contig7 494841..495502 +
1680791452.277795-CDS-P-littoralis_Contig7:495943..4961121680791452.277795-CDS-P-littoralis_Contig7:495943..496112Pylaiella littoralis U1_48CDSP-littoralis_Contig7 495944..496112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.105.2prot_P-littoralis_Contig7.105.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 494841..496112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.105.2

>prot_P-littoralis_Contig7.105.2 ID=prot_P-littoralis_Contig7.105.2|Name=mRNA_P-littoralis_Contig7.105.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=277bp
MPRSMRECGGKNSSLESRLAAVSTEPTSPPSRGEMARNRPARYVKKQLSR
VDPGEGGDRGAAKTPPGGQQRQKLGVEALSFSRQQQQQQQQRQQQQQHQQ
ELTTDEIRRQFLSLGPSAETAPVAPVRKQRRASDVPSQPRSRQDSSQQRD
GTTLRRISASTARAMHAASSSTSGPGFFGSFDDSRYWDYAFRFTQRQDIG
NQCRECKRPFSTLNEEIAVRRGGRIELRYHKECFSMVADPRSQPASSANV
GKFVRSLEGTVAPEELYRKMRTRGHW*
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mRNA from alignment at P-littoralis_Contig7:494717..497526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.105.2 ID=mRNA_P-littoralis_Contig7.105.2|Name=mRNA_P-littoralis_Contig7.105.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2810bp|location=Sequence derived from alignment at P-littoralis_Contig7:494717..497526+ (Pylaiella littoralis U1_48)
GTTGTTGCCCGTTTCCTAATTTTAGACTAAGCCTCTCGAAGATATGTACA
GCGGTGGTGCCTTCGTGTGGTGGTGAACGCCACACGATCGGTATGTCGAG
GGTAGAGAGAGTAGTTTCGCTGGTATGCCGCGGTCGATGAGGGAGTGCGG
TGGCAAAAACAGTTCGCTTGAATCCCGGTTAGCTGCTGTATCGACAGAGC
CCACATCTCCACCGTCTCGCGGCGAGATGGCAAGGAACAGGCCGGCGAGA
TATGTAAAAAAACAGCTGTCTAGGGTTGATCCGGGTGAAGGGGGCGACAG
GGGAGCAGCGAAAACTCCCCCCGGCGGGCAGCAGCGGCAGAAGCTCGGCG
TGGAAGCTCTGTCTTTCTCAAGGCAGCAGCAGCAGCAGCAGCAGCAACGA
CAACAGCAGCAACAACACCAGCAGGAGTTGACCACCGACGAAATCAGGCG
GCAATTTTTGTCATTGGGACCGTCGGCCGAAACGGCACCCGTCGCACCGG
TCCGGAAACAGCGCCGTGCTAGCGATGTTCCATCCCAGCCGCGGTCGCGG
CAGGATTCTTCTCAGCAGAGAGATGGCACTACCCTCCGACGCATCTCTGC
TTCGACGGCGAGGGCAATGCACGCTGCTTCGTCCTCCACCTCCGGCCCGG
GTTTCTTCGGGAGCTTCGATGATTCTCGTTACTGGGACTACGCCTTCCGA
TTCACGCAACGGCAGGATATTGGAAATCAGTGTAGGGAATGTAAGCGACC
GTTTTCGACTCTGAACGAAGAGATCGCTGTGAGAAGGTGAGATCAATCGC
ACGCAAACGTGTAGACTACTATCGTTTCACTGTGCAATGCCGTAACACCA
CGGGAAAAAAGACCCTCGTTCCCTGCTGTAAACGTCCCGCGCAGGACTTG
TCGCTCCGTATCCGATACTTTGTGTTGAGTCGAGGACCGTCATCTCTTTC
CCCGAGCTGACAGGTTGGAGCTACTCCTGCTGTCCCCGTCTTCTCGATTG
ATAAGCGCGTTCGCGCCAGCGGCGGCCTCCCACATAGATGTAGGGTCCTG
TCTGTTGAACAATCCTTCCTCTCCACGACGACCTCTTGAAAAATGCGTAC
GAAAGTTCAGTGAACATGCTTCTCCCTCGACAAATAACGTTGTTTTATGT
TTTATTCGGATACAATTCGCAAGACGGAAAACACTGCTGCAACCATCGTG
CGTTCGGCTCGTCCCCCGCGTCAGCAGGGGTGGGCGCATCGAGCTAAGGT
ACCACAAGGAATGTTTCAGCATGGTTGCCGACCCACGCAGTCAGCCGGCT
AGCTCGGCGAACGTGGGGAAGTTCGTTCGGTCGCTGGAGGGCACTGTGGC
GCCCGAAGAGTTGTATCGCAAGATGCGCACACGCGGCCACTGGTAGAACG
AATTGGCATGGCTTACGGGGTGCGGGAAAATGGCAGCACACAGCGTCATC
GGTGTAGACACTCCCGCGATGAGGACCGGAGGATGTGACGCACTGAGGGG
AGCATAATAATCAGCGAAAGGCTCATTTCATTTCGTTGTCATGCCTGGTA
AGTCTGTCAGCGAAAGGGCTGGCTATGTGGTGTGAAGGATTAGCCCCTTG
TATCAAGGATAGCCCTATTACCTAGCAGGCCTTCCTTGGTTGAAAAAACG
AAAATATGCGGCGATATGTTTCTTGGCAATAATGGCGCAATACTTCGAAG
TTCACGAATTACTTCTCAAAGTATGTTTTTCGATTGGAGCGCTTAGCCCC
CTCACCACGTGAACGCTGTGATTGATATATGGACACTAGACACGAGACCA
CTCAGCCGGCCGCTGATTACGGTGGGTCTCAAGAGGATTCCCCCTTATGG
CATTTAACGAACACACTTTGAACCTCTACTATACGCGCGTCGATCTTGTG
CGGATCTGGACTGTTGCACTTCCTCCCTCTCTCGATAAAAACGATTAAGC
CTTTCACCCTCCAGATTTCTCCGTTCCTACAAAAATGTGTGCGTCGCTGC
TTGAAAGCATTTGATGTACAGCCGAGGTGATGCAAATCGCACCGCGAGCG
CGGTAGATCAAGTGGCGTGTACCATGCCTCTCAACCCGCCTGCCTCTCCA
TCCGCCTGCATGTCGTCGTGAGGTCGTTAAAGGTTACATCTGACCCTCCT
CACGGAAGAGTTTATTTTGATCGACTTCAGCACTAACATTCCAATTATGT
GGGAGCGCAGTCTGGTCGTCGTTAGCATGCCTGTCGTGAAAATTTAAATA
TTCATTGTCACGCGCGGATTGCTTGCTTGCAGCTTCAATGCACACACACA
TGTATAGGTACCGCCCGTGCGCCGTTGCCCCCGTCTCCCTACGAAGCGGC
CACAACGAAAGCTTTGTACGTCGTGCGGTTTTCGGAGCACATCTTGTTTG
GCCAAAGATAATTTTTGTTTTCTTCCTGCCTTCATGATTTGACATGTTTG
TTGGCGTACATGCTCACATGCGCACCGTCACACGGTACAATAGAAAAAAA
AACTGATTCAAACATGCCGCCCAACCCCAAACCCCCCGAATCCCCCGCCG
TGCAGTATTGCGAGAAACGGGTTTCACGCGCCATGCGAGCAGGCTTCTTC
TGGTTGTTCCTGGCGCATTCAGCGAAAAGGTTCAAGAATGCGTGCTTGCG
CTCAGGAGTGCAAAAAAATACGGCGCCACGTGGTGTCATTTCTTTAGGGG
CGCGATATATCTAGCGGCAGTGAGAAGGGGGGGGTCGTCGTGTACGACGA
TTGTGTGACCCTCTCTTGTAAGCAGGACCTCGGAGAATGAGATACGACCA
GGGGTAGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:494717..497526+

>mRNA_P-littoralis_Contig7.105.2 ID=mRNA_P-littoralis_Contig7.105.2|Name=mRNA_P-littoralis_Contig7.105.2|organism=Pylaiella littoralis U1_48|type=CDS|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig7:494717..497526+ (Pylaiella littoralis U1_48)
ATGCCGCGGTCGATGAGGGAGTGCGGTGGCAAAAACAGTTCGCTTGAATC
CCGGTTAGCTGCTGTATCGACAGAGCCCACATCTCCACCGTCTCGCGGCG
AGATGGCAAGGAACAGGCCGGCGAGATATGTAAAAAAACAGCTGTCTAGG
GTTGATCCGGGTGAAGGGGGCGACAGGGGAGCAGCGAAAACTCCCCCCGG
CGGGCAGCAGCGGCAGAAGCTCGGCGTGGAAGCTCTGTCTTTCTCAAGGC
AGCAGCAGCAGCAGCAGCAGCAACGACAACAGCAGCAACAACACCAGCAG
GAGTTGACCACCGACGAAATCAGGCGGCAATTTTTGTCATTGGGACCGTC
GGCCGAAACGGCACCCGTCGCACCGGTCCGGAAACAGCGCCGTGCTAGCG
ATGTTCCATCCCAGCCGCGGTCGCGGCAGGATTCTTCTCAGCAGAGAGAT
GGCACTACCCTCCGACGCATCTCTGCTTCGACGGCGAGGGCAATGCACGC
TGCTTCGTCCTCCACCTCCGGCCCGGGTTTCTTCGGGAGCTTCGATGATT
CTCGTTACTGGGACTACGCCTTCCGATTCACGCAACGGCAGGATATTGGA
AATCAGTGTAGGGAATGTAAGCGACCGTTTTCGACTCTGAACGAAGAGAT
CGCTGTGAGAAGGGGTGGGCGCATCGAGCTAAGGTACCACAAGGAATGTT
TCAGCATGGTTGCCGACCCACGCAGTCAGCCGGCTAGCTCGGCGAACGTG
GGGAAGTTCGTTCGGTCGCTGGAGGGCACTGTGGCGCCCGAAGAGTTGTA
TCGCAAGATGCGCACACGCGGCCACTGGTAG
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