mRNA_P-littoralis_Contig1177.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1177.7.1
Unique NamemRNA_P-littoralis_Contig1177.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1177.7.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.450e-13
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 KKNPNRTTTCGNQQGFLVSQLDIQGVLDRQKEREGNGDNGSYVLARTIRSNLQYV 165
            K +P+R TTCG QQ  +++ + IQ VLDRQKER+  GDN SYVLART+R  LQY+
Sbjct:  123 KSDPDRITTCGRQQAHIIAGVSIQHVLDRQKERDSQGDNVSYVLARTVRRILQYL 177
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BLAST of mRNA_P-littoralis_Contig1177.7.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-7
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   37 QQGFLVSQLDIQGVLDRQKEREGNGDNGSYVLARTIRSNLQYV 165
            QQ  +++ + IQ VLDRQK R+  GDN  YVLART+RSNLQY+
Sbjct:  102 QQAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRSNLQYL 144
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BLAST of mRNA_P-littoralis_Contig1177.7.1 vs. uniprot
Match: A0A6H5K9U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U2_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.670e-5
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 KKNPNRTTTCGNQQGFLVSQLDIQGVLDRQKEREGNGDNGSYVLARTIRS 150
            K +P+R TTCG QQ  +++ + IQ       ER+  GDN SYVLART+RS
Sbjct:  119 KSDPDRITTCGRQQAHIIAGVSIQ-------ERDSQGDNVSYVLARTVRS 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1177.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE5.450e-1360.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI1.010e-760.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9U2_9PHAE2.670e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1177contigP-littoralis_Contig1177:47126..48181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size322
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789492.4135303-CDS-P-littoralis_Contig1177:47125..471971680789492.4135303-CDS-P-littoralis_Contig1177:47125..47197Pylaiella littoralis U1_48CDSP-littoralis_Contig1177 47126..47197 +
1680789492.4256468-CDS-P-littoralis_Contig1177:47933..481791680789492.4256468-CDS-P-littoralis_Contig1177:47933..48179Pylaiella littoralis U1_48CDSP-littoralis_Contig1177 47934..48179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1177.7.1prot_P-littoralis_Contig1177.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1177 47126..48179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1177.7.1

>prot_P-littoralis_Contig1177.7.1 ID=prot_P-littoralis_Contig1177.7.1|Name=mRNA_P-littoralis_Contig1177.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
KKNPNRTTTCGNQQGFLVSQLDIQGVLDRQKEREGNGDNGSYVLARTIRS
NLQYVFVYCVCSRVFWLRDRFGVPRKGIYEVAYVQEDDTRSHPRFENTDG
CHSPSC
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mRNA from alignment at P-littoralis_Contig1177:47126..48181+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1177.7.1 ID=mRNA_P-littoralis_Contig1177.7.1|Name=mRNA_P-littoralis_Contig1177.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1056bp|location=Sequence derived from alignment at P-littoralis_Contig1177:47126..48181+ (Pylaiella littoralis U1_48)
AAGAAAAATCCCAACCGGACGACAACTTGCGGCAACCAACAGGGATTCCT
AGTGTCTCAACTAGACATCCAGGTATGTGTGTTGTGGGAGTGCAAGAGAT
GCCTGTATCTAAGCCCCAGCGCAAAATGACATGTTCGACATAAAACATTT
GAAAAAAAACAAAAAACAACAGCAGCCGAACACAGCAGCTGTACATTCAT
TACCGAAGACATTTAAGCTGAACATACTGCTGTAGCAGCATCCTTATTTT
GAGTATCTCTGCTTTCACGGTTCATCCTGCTACGTAGCATACCCGCTAAC
ATATCGTACCTACCAGGTACTCGGAGTACTTCGAAGTATCATAATTGAAG
AAAAACTGGTAACCGAAAACCACACGTGTCACCACGCCAAAAAAGACTGC
CGCGGGCAGGGGCTCCCTGATGGATACTCACAGCGGACGATCTGCCACTA
TCATACATATTACAGTACTCGCAGTATTGAGCGGCATGGTTGGATGATTT
TTTGGTTTGTGCTTTGTTGGTACTGTATGTACTATGATGAACGCTAAAAA
CAGATGCCTTCAACAATAAAAAGCAATCGAAATTGGCGCTAGCATGAAAT
CATGGATACAAAATACGGCAGTCAGTAGAACTTGAAAACATCGCTCGGGT
GTGCTTGGGGTCTCATCGCTCCAATAGCCTCTTGGACATCATTTTATGTT
GATGATAATTGTTTCTTCGGCTACTGAGTATGCTGTATGCTCGGTGTACA
ACCACCCTCCCCCCCCCCCGCCTGCCCCCCCGCGTCCCCGAAACGGATGA
CCTGACAGGGCGTGCTGGATCGCCAAAAGGAGAGGGAGGGAAACGGCGAC
AACGGGTCGTATGTCCTTGCTCGCACGATCCGCAGCAATTTGCAGTACGT
GTTCGTATATTGCGTATGTAGTCGGGTTTTTTGGCTGCGTGACCGTTTCG
GGGTTCCGCGGAAAGGGATCTATGAGGTAGCGTATGTACAGGAGGACGAT
ACAAGGAGCCACCCACGTTTCGAGAACACGGACGGGTGCCACTCTCCTTC
TTGTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1177:47126..48181+

>mRNA_P-littoralis_Contig1177.7.1 ID=mRNA_P-littoralis_Contig1177.7.1|Name=mRNA_P-littoralis_Contig1177.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig1177:47126..48181+ (Pylaiella littoralis U1_48)
AAGAAAAATCCCAACCGGACGACAACTTGCGGCAACCAACAGGGATTCCT
AGTGTCTCAACTAGACATCCAGGGCGTGCTGGATCGCCAAAAGGAGAGGG
AGGGAAACGGCGACAACGGGTCGTATGTCCTTGCTCGCACGATCCGCAGC
AATTTGCAGTACGTGTTCGTATATTGCGTATGTAGTCGGGTTTTTTGGCT
GCGTGACCGTTTCGGGGTTCCGCGGAAAGGGATCTATGAGGTAGCGTATG
TACAGGAGGACGATACAAGGAGCCACCCACGTTTCGAGAACACGGACGGG
TGCCACTCTCCTTCTTGT
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