mRNA_P-littoralis_Contig1177.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1177.12.1
Unique NamemRNA_P-littoralis_Contig1177.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1177.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1177contigP-littoralis_Contig1177:59477..60015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size539
Hectar predicted targeting categoryother localisation
Exons1
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789492.3637128-UTR-P-littoralis_Contig1177:59476..595491680789492.3637128-UTR-P-littoralis_Contig1177:59476..59549Pylaiella littoralis U1_48UTRP-littoralis_Contig1177 59477..59549 -
1680789492.3857095-UTR-P-littoralis_Contig1177:60011..600151680789492.3857095-UTR-P-littoralis_Contig1177:60011..60015Pylaiella littoralis U1_48UTRP-littoralis_Contig1177 60012..60015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789492.3770535-CDS-P-littoralis_Contig1177:59549..600111680789492.3770535-CDS-P-littoralis_Contig1177:59549..60011Pylaiella littoralis U1_48CDSP-littoralis_Contig1177 59550..60011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1177.12.1prot_P-littoralis_Contig1177.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1177 59550..60011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1177.12.1

>prot_P-littoralis_Contig1177.12.1 ID=prot_P-littoralis_Contig1177.12.1|Name=mRNA_P-littoralis_Contig1177.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
MPLCDTYHLVSVSYVVLHVLLEGANVGTRRNRKFLRRMRVERGSSNWQPQ
QTHGKGGNCSVGIVLVNGSRTGGGCVQSRRLPLCCGRNHTASLGLRLSVF
LASLFISQCHYPASRIPTASDGRWTTKPCNWFTRQSRIGYVEQQRFHVEN
VTS*
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mRNA from alignment at P-littoralis_Contig1177:59477..60015-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1177.12.1 ID=mRNA_P-littoralis_Contig1177.12.1|Name=mRNA_P-littoralis_Contig1177.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=539bp|location=Sequence derived from alignment at P-littoralis_Contig1177:59477..60015- (Pylaiella littoralis U1_48)
TGCCATGCCGTTGTGTGACACCTACCACTTGGTTTCCGTCTCCTACGTCG
TGTTGCATGTACTACTGGAAGGCGCGAATGTGGGTACACGACGGAATAGA
AAATTTCTTCGAAGGATGCGAGTCGAGCGTGGTTCTTCAAATTGGCAACC
TCAACAAACACATGGAAAGGGAGGGAACTGCAGTGTAGGAATTGTTCTGG
TAAATGGCAGCAGGACTGGGGGTGGATGCGTACAGAGTCGGAGGCTACCG
CTGTGTTGCGGTCGAAACCACACGGCGAGCTTGGGGCTAAGGTTGAGTGT
GTTTCTTGCGAGTCTATTCATATCGCAGTGCCATTACCCAGCAAGTCGCA
TACCGACGGCAAGCGATGGACGATGGACAACAAAGCCGTGCAACTGGTTC
ACGCGTCAATCGCGGATTGGGTACGTCGAGCAGCAGCGGTTCCACGTAGA
AAACGTAACGTCATGACGTCCAGCGCCCACGAATCTCACACTCCCGGCCC
TGTGCAAGTCGCCGCTACGGCGACGGTGGCTGTCGCTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1177:59477..60015-

>mRNA_P-littoralis_Contig1177.12.1 ID=mRNA_P-littoralis_Contig1177.12.1|Name=mRNA_P-littoralis_Contig1177.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig1177:59477..60015- (Pylaiella littoralis U1_48)
ATGCCGTTGTGTGACACCTACCACTTGGTTTCCGTCTCCTACGTCGTGTT
GCATGTACTACTGGAAGGCGCGAATGTGGGTACACGACGGAATAGAAAAT
TTCTTCGAAGGATGCGAGTCGAGCGTGGTTCTTCAAATTGGCAACCTCAA
CAAACACATGGAAAGGGAGGGAACTGCAGTGTAGGAATTGTTCTGGTAAA
TGGCAGCAGGACTGGGGGTGGATGCGTACAGAGTCGGAGGCTACCGCTGT
GTTGCGGTCGAAACCACACGGCGAGCTTGGGGCTAAGGTTGAGTGTGTTT
CTTGCGAGTCTATTCATATCGCAGTGCCATTACCCAGCAAGTCGCATACC
GACGGCAAGCGATGGACGATGGACAACAAAGCCGTGCAACTGGTTCACGC
GTCAATCGCGGATTGGGTACGTCGAGCAGCAGCGGTTCCACGTAGAAAAC
GTAACGTCATGA
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