mRNA_P-littoralis_Contig7.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.23.1
Unique NamemRNA_P-littoralis_Contig7.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig7.23.1 vs. uniprot
Match: D7G1P6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P6_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 9.330e-17
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 3 
Query:  231 MEPTVESTAVEVVRMLAFLHQGKERSCKSQAAGGGVQTSRDTLVALLTRDLEGPHRARALQGLCDLLVGGEDVDRSVVAQVLDSVSWEAFGLVMGCLEQ 527
            M+   E TA+  V +LAF  Q +E        G G+Q SR+ LV+ L RDL+GP     LQGL D+LV GE   R+ V +VLD+VSWEAFGLV+GCLE+
Sbjct:    1 MDIAEEMTAMAAVGLLAFSPQDEE--------GIGLQCSREALVSSLERDLQGPRVRVTLQGLYDMLVDGEHSHRAAVGEVLDTVSWEAFGLVVGCLER 91
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BLAST of mRNA_P-littoralis_Contig7.23.1 vs. uniprot
Match: A0A6H5JSB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.130e-15
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 3 
Query:  246 ESTAVEVVRMLAFLHQGKERSCKSQAAGGGVQTSRDTLVALLTRDLEGPHRARALQGLCDLLVGGEDVDRSVVAQVLDSVSWEAFGLVMGCLEQ 527
            E TAV VVR+LA   Q +E        G G Q SR+ LV+ L RDL+GP     LQGL D+LV GE    + V +VLD+VSWEAFGLV+GCLE+
Sbjct:    6 EMTAVAVVRLLASPAQDEE--------GIGQQCSREQLVSSLERDLQGPRVRATLQGLHDMLVDGEQNHSTPVGEVLDTVSWEAFGLVVGCLER 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1P6_ECTSI9.330e-1750.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSB3_9PHAE1.130e-1553.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:108624..109687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size581
Hectar predicted targeting categoryother localisation
Exons2
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791448.3387406-CDS-P-littoralis_Contig7:108623..1087661680791448.3387406-CDS-P-littoralis_Contig7:108623..108766Pylaiella littoralis U1_48CDSP-littoralis_Contig7 108624..108766 -
1680791448.3569074-CDS-P-littoralis_Contig7:109249..1094991680791448.3569074-CDS-P-littoralis_Contig7:109249..109499Pylaiella littoralis U1_48CDSP-littoralis_Contig7 109250..109499 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791448.3733535-UTR-P-littoralis_Contig7:109499..1096871680791448.3733535-UTR-P-littoralis_Contig7:109499..109687Pylaiella littoralis U1_48UTRP-littoralis_Contig7 109500..109687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.23.1prot_P-littoralis_Contig7.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 108624..109499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.23.1

>prot_P-littoralis_Contig7.23.1 ID=prot_P-littoralis_Contig7.23.1|Name=mRNA_P-littoralis_Contig7.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MRIATAAGDGASMGMEPTVESTAVEVVRMLAFLHQGKERSCKSQAAGGGV
QTSRDTLVALLTRDLEGPHRARALQGLCDLLVGGEDVDRSVVAQVLDSVS
WEAFGLVMGCLEQSVASSIRLGCNGSGSSSS
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mRNA from alignment at P-littoralis_Contig7:108624..109687-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.23.1 ID=mRNA_P-littoralis_Contig7.23.1|Name=mRNA_P-littoralis_Contig7.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1064bp|location=Sequence derived from alignment at P-littoralis_Contig7:108624..109687- (Pylaiella littoralis U1_48)
CTGTAGGTAGATATTGGTACGTTGGTTGAGCATAACACACCGGTGCATGT
CTGCCACAGAGCTGATGGAGTAAGCGTTCACGCTCGTGCTACTGAGCTTT
TTACCACTTGCGCATTCTGCTGTTCATTCTATTTCCTGATTGTCTGGTAA
CAGTGAGTAAGTACCATCTGATCTGCACCGACAACAGGATGAGGATTGCG
ACGGCAGCGGGGGACGGAGCATCGATGGGCATGGAGCCCACCGTGGAGAG
CACGGCCGTGGAGGTCGTGCGAATGCTGGCATTCCTGCATCAAGGCAAAG
AGAGGTCATGCAAGTCGCAGGCCGCCGGCGGGGGCGTACAAACCTCGCGA
GACACCTTGGTGGCATTGCTGACTCGGGATCTCGAGGGGCCGCACCGGGC
GCGAGCTCTTCAGGGACTGTGCGACCTGCTGGTCGGTGGTAAGCATGGAG
CGGATTGCAGCCCTGGTGCCGCTAAAATGTCGTAATACACTATGTAGTAC
TGGTGTATATATTGGGCGTTGGCCGTAATGGTAGGTACGACGTACGCCTG
TAGCCCGTATGTATGTACTACACATGATAAACCTATGATATCGTATGCAG
CACTCTTTTGAATCATAACCCGGCTGTTCAAAATAGTCAGCACCGAACCA
TACGGTTACTCACTTTTGTACTGTAGGACACTTTTGAAGTATCATTACCG
GGCTGTTCAAAACATGCAGCACCGAAGTGGAAGAGCAAAGAGTGCTGTGT
ACTGCTGTTATGCTCGTACAAACGCGTATCATATCAAATCTACTTCTGTG
TTATCTCCCCCCCAGAATACTAAAAAAAATCACCCGGCCCGATTCACCGG
TTCGACGGCAGACGCGTCCCGTAAACCCACCTCTCATACTGTACCTCAAC
CCGCGGAATTAACTCTCACAGGCGAAGACGTCGACCGCTCGGTCGTGGCG
CAAGTCCTAGACTCGGTCTCCTGGGAAGCCTTTGGGCTCGTGATGGGCTG
TCTAGAGCAGTCTGTCGCCTCCTCCATTCGGCTGGGCTGCAACGGCAGCG
GCAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:108624..109687-

>mRNA_P-littoralis_Contig7.23.1 ID=mRNA_P-littoralis_Contig7.23.1|Name=mRNA_P-littoralis_Contig7.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig7:108624..109687- (Pylaiella littoralis U1_48)
ATGAGGATTGCGACGGCAGCGGGGGACGGAGCATCGATGGGCATGGAGCC
CACCGTGGAGAGCACGGCCGTGGAGGTCGTGCGAATGCTGGCATTCCTGC
ATCAAGGCAAAGAGAGGTCATGCAAGTCGCAGGCCGCCGGCGGGGGCGTA
CAAACCTCGCGAGACACCTTGGTGGCATTGCTGACTCGGGATCTCGAGGG
GCCGCACCGGGCGCGAGCTCTTCAGGGACTGTGCGACCTGCTGGTCGGTG
GCGAAGACGTCGACCGCTCGGTCGTGGCGCAAGTCCTAGACTCGGTCTCC
TGGGAAGCCTTTGGGCTCGTGATGGGCTGTCTAGAGCAGTCTGTCGCCTC
CTCCATTCGGCTGGGCTGCAACGGCAGCGGCAGCAGCAGCAGC
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