mRNA_P-littoralis_Contig1177.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1177.8.1
Unique NamemRNA_P-littoralis_Contig1177.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1177.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1177contigP-littoralis_Contig1177:48287..48613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size328
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789492.3246753-UTR-P-littoralis_Contig1177:48286..483131680789492.3246753-UTR-P-littoralis_Contig1177:48286..48313Pylaiella littoralis U1_48UTRP-littoralis_Contig1177 48287..48313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789492.33398-CDS-P-littoralis_Contig1177:48313..486131680789492.33398-CDS-P-littoralis_Contig1177:48313..48613Pylaiella littoralis U1_48CDSP-littoralis_Contig1177 48314..48613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1177.8.1prot_P-littoralis_Contig1177.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1177 48314..48613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1177.8.1

>prot_P-littoralis_Contig1177.8.1 ID=prot_P-littoralis_Contig1177.8.1|Name=mRNA_P-littoralis_Contig1177.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MPEGSDAGVGNNELAQQLIAMLEAQQKAQQEVMAKLTERIESLEIRSPAR
TAEVVQQGESPGSGEAAPGVQQGRHAGAPLRVLVPPPSAVGSTEPLRVGQ
back to top

mRNA from alignment at P-littoralis_Contig1177:48287..48613+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1177.8.1 ID=mRNA_P-littoralis_Contig1177.8.1|Name=mRNA_P-littoralis_Contig1177.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig1177:48287..48613+ (Pylaiella littoralis U1_48)
GCGCGGAGGAGCCCATTCGCAGCGGCGATGCCTGAAGGATCAGATGCGGG
TGTGGGAAACAACGAGCTGGCTCAACAACTGATCGCGATGCTTGAAGCGC
AGCAAAAGGCACAGCAAGAGGTGATGGCAAAGCTGACGGAGAGAATAGAG
AGCCTGGAGATTAGGTCGCCAGCGAGGACGGCGGAGGTTGTACAACAAGG
AGAGTCACCAGGGAGCGGCGAGGCCGCTCCGGGCGTACAGCAGGGACGCC
ACGCAGGGGCGCCGTTGCGTGTCCTGGTACCCCCGCCCAGTGCGGTTGGA
TCGACGGAACCCCTTCGAGTCGGACAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1177:48287..48613+

>mRNA_P-littoralis_Contig1177.8.1 ID=mRNA_P-littoralis_Contig1177.8.1|Name=mRNA_P-littoralis_Contig1177.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig1177:48287..48613+ (Pylaiella littoralis U1_48)
ATGCCTGAAGGATCAGATGCGGGTGTGGGAAACAACGAGCTGGCTCAACA
ACTGATCGCGATGCTTGAAGCGCAGCAAAAGGCACAGCAAGAGGTGATGG
CAAAGCTGACGGAGAGAATAGAGAGCCTGGAGATTAGGTCGCCAGCGAGG
ACGGCGGAGGTTGTACAACAAGGAGAGTCACCAGGGAGCGGCGAGGCCGC
TCCGGGCGTACAGCAGGGACGCCACGCAGGGGCGCCGTTGCGTGTCCTGG
TACCCCCGCCCAGTGCGGTTGGATCGACGGAACCCCTTCGAGTCGGACAG
back to top