mRNA_P-littoralis_Contig7.230.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig7.230.1
Unique Name	mRNA_P-littoralis_Contig7.230.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig7.230.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig7.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig7	contig	P-littoralis_Contig7:894430..901758 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	572
Hectar predicted targeting category	other localisation
Exons	2
Cds size	423

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791447.386026-UTR-P-littoralis_Contig7:894429..894486	1680791447.386026-UTR-P-littoralis_Contig7:894429..894486	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig7 894430..894486 +
1680791447.3990989-UTR-P-littoralis_Contig7:901244..901335	1680791447.3990989-UTR-P-littoralis_Contig7:901244..901335	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig7 901245..901335 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791447.4122484-CDS-P-littoralis_Contig7:901335..901758	1680791447.4122484-CDS-P-littoralis_Contig7:901335..901758	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig7 901336..901758 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig7.230.1	prot_P-littoralis_Contig7.230.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig7 901336..901758 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig7:894430..901758+
coding sequence from alignment at P-littoralis_Contig7:894430..901758+

protein sequence of mRNA_P-littoralis_Contig7.230.1

>prot_P-littoralis_Contig7.230.1 ID=prot_P-littoralis_Contig7.230.1|Name=mRNA_P-littoralis_Contig7.230.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MDNFFCGRQERRRRLPAEMRRTTKMFSALRAQKSSKSAKHKKSVDDVQTP
GMNPSTPPENTYFALPSHASNTSATSRALASVSGSSASPNSSRQNGVINI
DIPRDDTDRFAQSYAAWPLDGHYNMVYVVSQQLRHDDPPLF

mRNA from alignment at P-littoralis_Contig7:894430..901758+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig7.230.1 ID=mRNA_P-littoralis_Contig7.230.1|Name=mRNA_P-littoralis_Contig7.230.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7329bp|location=Sequence derived from alignment at P-littoralis_Contig7:894430..901758+ (Pylaiella littoralis U1_48)
CTCTCGGCTGAGAGACTAATAAGAGATATCATCCCCAAGAGCTGGAAGCT
ACCCATTGTGAGTGCCCAAGTGGCAAAGAACCCCCTAGGAGCGAGAGCTC
CTTAAGATCTGGCGTCGACGTATAGGCTTGTGGTCTCATTTCAAAGAATC
TCGCGACGTAGCGCTGCGCTGCGGTGTTCTCGATTTTGAGTTCCACCAAG
ACCACATATTGGATCACTACTCTATACCCAGTATACTTGTAGCTCTTCTT
TTTTTTCTCCCGTCCATTTTTTTTGGACCAGCCACCCAGACACACTCGAC
TCGTGACACCTGGTCACTCGTACTTGTGGCGCCCTTGTTGTCGCCAGAGC
ATCTTTGCTCTGACGCCTCTTCGGACGCCCCACCGCGCCGCCCTTGCGGA
CGACGCGCCCATACCTGTGATCGGGTCGCCGCTACTTTTATCTCCTTCTG
AAGACCAACCTCTGCTCATCCGACTGCTGTAAACTCTCAGCCAGTGGCGC
GACGCGCATTTTGGGCACTCTAAAACCCATATTAAAAAAAAAATCACCGG
AAAATTTTACTGCTGTAAAGGCGAGAATGACGCACGACGTTTCTACTGCT
GTAGAGGTACCCGTGACTCATCATGCGTTGGACTTGGTTTTAGAACCGGA
CGTGGATCGCTTCAACAAACTGCTTTTTCATCACTGCCCAAGTGTGGCCA
AGCTGGCACTTCCTGCTGTGGGCCGAAGCCAAGATGATAGTACTTTGCCA
CTACAGTACCTGTACTGCGCACTGCTGGACCTCCTCTGGCGATGTACCGG
CGCCGCGCCATCGATCATCCGCTCATCGCACTAGACTTTATGCTCCCACA
CCATATTGCTGTGGACCTGTGTGTTGGAGTCTTGGGCGTCGAAAATTGCA
CACCACCTTTCAACTCTCTGCCACATATGAAATCTCTCCCGAGATATGCA
CCACTTTTCGGACAACCCAATCCTGGCTCCGGCATTTCTCTCCGAGGCCT
TCATGCTTGCGTTCCACGAAAAACCCGTTCGAACACTGCTGCTGTCGCCA
CTTCACACCCGTCCACAAGCAATAATGCCTGCCTTCTTTCGGATCGAAGC
CTGGCTGCTGCTAATTGGGACAAATACGTGATGGCACCACGAGGGGCTTT
TGAGTTTTATGTGTTTCCTGCCTCACTGTGGAACTGTAGTTCGCTGCTGG
TTCGAGCTTTCACTCATCATGTGCTCACGCCGCTGCAGCCGATCGCCGAA
TTTTTTCCACCTTCCTCCTTGGCTTTTCCTGAACGCCGTTCCACGATCGC
ACAGCCTGGCATCCTGCTCGAGGTTATGTCTGCTCCCGGATCAGCACAAA
GCCCTAGCCGGGACGACGTGGAACCTGCTGGTGACGGAGCTCCTGCAGGA
GTTTTGCCCGGGACGCGTGCACCGGACCCCCTCCCCGGAGCAGTGGACTC
GAGTGCTACCTCGCCCGGATTTCCAGCGGACAATCTGCACACAGCAGACG
ATGGTGCTCGGGAGATCGAGCGCCTCACGAACGAGAGGACGGCCAACAAG
CAGCACATCGACATCCTGAACCAGCAGGCACAGGAGAAAAAGAAAACTCA
ACGAGCGGAACAGGAGCAACAGGACCTGGATCGTTAGGAAGCAGCGCTCG
CAGCAGCAAAGGCGACGCACACGCTGGTTCGTCGCCTTTGCTGCTGCGAG
CGCTGCTTCCTAACGATCCAGGTCCTGTTGCTCCTGTTCCGCTCGTTGAG
TTTTCTTTTTCTCCTGTGCCTGCTGGTTCAGGATGTCGATGTGCTGCTTG
TTGGCCGTCCTCTCGTTCGTGAGGCGCTCGATCTCCCGAGCACCATCGTC
TGCTGTGTGCAGATTGTCCGCAAGAGCTCCTTAAGAAAAGCCTATACCCG
TAGGATGAATTCGATATGAACTACGGTTGAATCAACGCCGTCAATCATTC
ATAGTGACATTTTCTTTCTTTCTCGAAAATGTTGATTAATGCCTGAAACA
GTTTCAGGCCTGAATTGGTCACCCAGGCCTAAAAACGCTATTATTATGGT
GTAACGTTCCATCTAGACCCCCGACAGCCCTGTAAGCGGTATCGGCGTGT
AGCTGCAGACATCCGGCGTCCGTGCAAGCAAAACAAAAAAACGAAAAGTG
AACAACGATCGAAATAGAGAGCAAGTAAAGAACTCACTCCGAATCAGTAG
TTGACTCTGAATCTGGCGAAAGGTGTTGTTAGGGTTACATCCGTACATTC
GCAACATAGGTTTGCTCATGGCCAACTCATGCAAAACAAATTGAGAAAGA
TGTATCAGCCGGTCTGCTGTACAGCAGCATTATTATATACTGCTGTATGT
ATGGTAGTTGTACAGCAGTAGAGAAAGGAGATGATAGTCCGGGTTCTTTT
TTACAACACAACATGCCACAGCCACGAGCGATTACCATTTTGCGAACATG
CCAGTATGATCCTCACCCAAACGATTACCACACGAGGGGAGCCATACGCA
CAGCTCACGGGAGATGGGTTTGTCATCGCTGTGGCTTCATTCATTGGGGA
ATTACGAGCGAAGATACAAACTGTGGTCTCACTCAGAGGAAGCTTTCATA
CTCCTCCTCCTGCTGCTGCTGTGCTGGTGATGCTGCTGCTACATACGGTC
GGTTTTTGGTTGCTGATGAACACGATGGAATGGATGATGACACGGCAAGC
GTACACAGAAAGATGGTGGACACATGTATGTATGGACAGCAGCAAGCAGT
AGTAGCAGCTGCTGCAATAACACAGAAAATAGTAGCAGCAGCTCTCCTCC
TCTGATGCTCTGTTGTGATTAATATCGTTTGATTTGTCTACACACAAAGA
GAGAGATAACTTCACACATTTTTTTTTTAATATATTTTTCGATCGTATTT
TCCGAACTGATCCAGCGTTCGGAAAATGTCCGATTTTCCGGCTGAAATCC
GATTAAAAGCTGTTCGGAAAATTTTGTTCGGAAAATGTTGTTCGGAAAAA
GGTGTTTTCCGAGCCCATAAGAAGCCTGATTTAAAAAAAAATCGGAATCT
ATCAAAAAATGAATAAAAAATCCGGCCCTACAAGAAACGGCCTGATCAGG
AGACTCCTCAAGGATCCTGTTGCGACACATTTTTCGTTTCTTCTCCAGTT
TCTGCTCTACAAGTAGGGTCTGATAATACATCTTGGGCCTTGAGGTGAGA
ATGGGAGGAGGAAAAGAGAGCGAGCATGCGACCGCTGTTTGACAGAACTG
CCACCACGCGGTCCCCTCACGAGCGCTCCCCACCAAGTAGAGTTTCATGA
AGATCTCACCGGTCTCCGTCGGGTATGACGTGTGTGTGTGGGTGTGTTGT
CAGGCTAAATCTTATGGCACACCGATTTTGAGACAAAGCTTTCCAAATCT
CGTTTGCCAAAATCGGTGGGCCCACAGGCTGACTGTGTGTGTCCCATGGG
ACACACCGTTTTTGATAATCAAGCGTGTCGATTTCCAGCTGTCGATTTCA
GCCCTGGTTTTCAGCGTCTTCCAGAAGAAGAAGAAGCATTTTGCATCAGG
GACATGAATTAAAAGAGAACAGCCGCACCACGCACCGCACACCACATAGT
TAGATTGATGGTATAGTCGCTGACACTAACACGGACGGAGTGAACACCTG
CTCTTGTTGTTTTCAGCGTCCTCCATCACGGGTTGGGTGTGGGGTTTGGT
TGCGGTTTGGGTTTGGTGCTGTGCGCTTGTTGTCACGAATGCAATCAACA
ACAACAACTGAACAAAGAATACATAGTCTGCAGCAGCAGCAGCAGCAGCA
GCAGCAGTAGCTCGGGGATCGATGCGGTGCGATCCCGCTATGTTGGTAGA
ATCGTCAAAACTCAAATCTCGTGGGCCAGATCTCGTGCGTGGAGACACAC
GAGATTTGGGCCCAAAACCGGTGGGACTGGCTCCCCGATTTTCGTTCACA
GGTTTTCAAACCTCGTTTTGCCCAAAATCTGTATCCATAAGAAGACCGGA
TTTAATGGAGACGGCAAAATTCGTAAAAATGCAATCTTGTCACAAAATGC
TCGTCGTCAGCATTTTGGAGCCGAATGTTCGTTTCCCAAACATTTCGTGC
CGCGGCTTGGGGTGAGAACTTTTTTTCCCCTTGTATTTGTTTTTGTTTCT
CTCCTCGTTTCTATTATTTCCGGTGGTACGTATTGGTCTGCGGGTGGCTG
TGTCAACGGATGTTACTGACAAAAATAACCACTGCGCCATGGAATCTGAA
CGTCGAGAGGCCGCAGAGAGAGCCTCTTGTCACCGTGTCAACACCTTGAT
TGACCACTGGTTGGTGGTGGAAGCGTGCCAGACATGCAAAAAAAATGAGC
AACGGTTCGTTCGTTGATTGTATGAGATCGAGTCACGTACGAGTGTTCTG
TCTTCCCAACCGAGAGCAGAGCCGTTCACGGAGAGATGAAACATACCACG
TGCCACGTGACCTACCGGTATATGAAGAGCCGCTCCCATGTATCTTCTTA
ATTGCAGCCTGGCGGGTCTACGTGTGCCCGCCACCAACCCACAGCCAAAC
AAAGTGTTTGTCACGGTGATTTCAAGGGTTTCTTTGAGCCCTCTCTGTCG
TGCTTGCACGTGTGTGTCACCGTGGGTACGTACGTACGTGGCTGGTGTAT
GCCAAACTCTAAGCCGTGTGTGTGTCATCTGAAGATCGTGTTTGCGCTTG
GTGTTGGTGTGTCGGGTGTCGGGACAATAAGCGGGCCGACTTTTAATTCC
CGCCGCGTCAGGATTTTCAAGACTGCCGAGTTTGGGAAATAAATGTGGTT
CACCAAACATTTCCCAAAAAGGGCCGGAATCGGCCGGTTGGGAAATCTTC
GGCCGCATTTTCAGAAGGATTTTTATCCATAGAAAGTGAAAAAAAATACT
CGTCGCCGAATCCTGGCCGAAGATTGCATTTTGATGAATTTTTCTGTCTC
CATTAAATCCGGTCTAAGGTGGACCAAATTTTTTTTCAACGAGGTTTGAA
AACCTGTGGCTCAAAACCGGTGTGCCATAAGATCCCGCCTCATTCCACAC
ACATTTCCACCGATCTACTTGAGTACTACGTACATACATCATATGATATG
CATATGTATTATTGTCAGGGAGAATCGCGTGAGCGGGTTGCTTTTGGCAC
TGCGCACCAAGCAAGGTAAAAAAGGCGTCCACAAAAGCACAAGAAGAGTG
CAACACATATAATACCGGAGAGAGATTGACTGCCAGGATCAGAAATCCTA
CATCATCTATCTTCAGAGCAAATGGTAGTGCGCGAGGGGCATCATCAGCA
TGCAGAGATGGAAGATGCACGTGCTGTGAAACCTGTTCGTACTATCTATC
CGGTCAACTTTTTAAGCACCCTTTTCAATATTCAAATTGTTTTATTGTAC
ACCGGTAGCTGCTGCAATTCCGTTGTCCTCCTTGCATCCCACCGATGTTC
CGCCGGATCGGGCGTGGCTGTCTTCAGCTTTCTCAGCCAACCCAAGACGC
AAATGAATGTACTGCCGTTTGCCATGTTGTCTGTGTTATGTTTATGTTTT
CATAATAGACCTCCATGTAAATTTGGGTGTATGCTGCCGGTTGTTTCCCT
CGTTCTGTCTCGTTTTTTTTCAGTCAAAAAGTATATTCCTCTAGCTCAAA
CATCATTGTATACGAATCCTACGGGGCTGCTACAGGAAAACATCCCGGAT
ATTCCCACGAACAAATGCTTCAAGTAAAAAATAAAGGAAACTCTACCAAA
AGCCAAAAAAACAAACAAAACAAAGGCGAGCGGGCGCGAGAGAAGACGTT
TTTTTCACCAACGCCCTCCCCCCTGGCTGCTCTCGTGCTGCTATCCACTT
CTTCTCTATATCCACTACACTTTCCCCCGTTCGTTTACTCCCGAGCAGTA
GCTTCGTCTCACATCTTACACCTGCCCCTATCCCAAAAAGAAGAAAGAAA
TAAAACGATATCATCTCATAAATCAGTAGGCGTCATGGTTGGGGGAAAAT
GCGGGGATGGAGATGAACCATCCCCGGCTAAGCTCCTAAAAAATCATCAC
TATTACCTTGAAGTGCGAAATGAACACTTCCTTTTTTTTCAAAATAGATG
TGTTGAAGGATGGGTTTCAACTGTTGTTCGACATAATATCCCTAAGGAAT
TATACAAAAACGCATGGGGAGGATAGTCCTAAATTATCCCCGGGTTGGAA
AACCAATAAGATGAAGCTGAAAATATCAGGGAACGCTAATTTTCTAATGA
GGGCGGGGAGTGCGAATACTCTGTTAAAATTGTCTTACTCGTGCTCTTGA
TACGGAGAAACGGCTAATATCCAAAAAATCCTGAAAAACGGAAACGGTAT
GGAAATGAAAAGAAAAATCTCTGAAAGCTCTTCGCTTTGCACTACTTTAC
ACCCTGTTCCAAGAGCTCATTTTTTTCAAGGTAGAGTACTTCTGGGGTGG
GGGTCACGAATCTGCCGTCAAAATGTCTCAGTTTGGCGTTGCCATCGAAA
ACTTTTGTGCGAAAATATCGTTTCATCGAGATTTCGACCCATTTTGACAA
AACTTGCCCAGGCCCTTCCCGAGCTGATTGTTGTCCGAGCGAATTTCTGA
GTGGTGTTACCCCCCTTTAGTCGACCAACAGGGAGCCATTGGCGAGGTGT
TTCAAAACAAAAAAGTTTGGGAATGCTGCAAAACTTACGATCCGCAGCAA
GTTCGCGACCTCTCTGAACAGTTTTTTTATTGTGCATTTTTTCGACACGA
CGGATTCGGGTGTTGTTTCAAAAAGAACGAAAATATCGGGTTTTGATTTT
TTTCCGTTTTTTCAGGTGGGGAGGGCCAGTGACGCCCATTGACAGATGGC
GCTATTTGGAACAGTCGAGCGGGCCCCGCGAGGTTGCGGGCAGAAACAGC
GGCGGGATGGATAATTTTTTCTGCGGCCGGCAAGAACGGCGTCGGCGGCT
TCCCGCAGAAATGAGGCGAACAACCAAAATGTTTTCGGCGCTACGAGCCC
AGAAGTCTTCAAAATCTGCAAAGCACAAAAAAAGCGTAGACGACGTTCAA
ACCCCTGGTATGAATCCCTCCACCCCGCCAGAAAACACTTATTTCGCGTT
GCCTTCGCATGCCTCAAATACATCGGCAACGTCTCGCGCCTTAGCTAGCG
TTTCTGGTTCTTCTGCGTCGCCCAACAGCTCCCGGCAGAATGGAGTAATC
AACATCGACATACCGCGTGACGATACCGACCGTTTCGCACAGTCCTATGC
AGCTTGGCCTTTGGATGGCCACTATAATATGGTTTATGTTGTTTCACAAC
AGCTTCGTCACGATGACCCCCCGCTGTTC

Coding sequence (CDS) from alignment at P-littoralis_Contig7:894430..901758+

>mRNA_P-littoralis_Contig7.230.1 ID=mRNA_P-littoralis_Contig7.230.1|Name=mRNA_P-littoralis_Contig7.230.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig7:894430..901758+ (Pylaiella littoralis U1_48)
ATGGATAATTTTTTCTGCGGCCGGCAAGAACGGCGTCGGCGGCTTCCCGC
AGAAATGAGGCGAACAACCAAAATGTTTTCGGCGCTACGAGCCCAGAAGT
CTTCAAAATCTGCAAAGCACAAAAAAAGCGTAGACGACGTTCAAACCCCT
GGTATGAATCCCTCCACCCCGCCAGAAAACACTTATTTCGCGTTGCCTTC
GCATGCCTCAAATACATCGGCAACGTCTCGCGCCTTAGCTAGCGTTTCTG
GTTCTTCTGCGTCGCCCAACAGCTCCCGGCAGAATGGAGTAATCAACATC
GACATACCGCGTGACGATACCGACCGTTTCGCACAGTCCTATGCAGCTTG
GCCTTTGGATGGCCACTATAATATGGTTTATGTTGTTTCACAACAGCTTC
GTCACGATGACCCCCCGCTGTTC