mRNA_P-littoralis_Contig7.330.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.330.1
Unique NamemRNA_P-littoralis_Contig7.330.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:1289393..1289882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZX2
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size324
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000921
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size324
COG categoryC
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791447.0746038-CDS-P-littoralis_Contig7:1289392..12895301680791447.0746038-CDS-P-littoralis_Contig7:1289392..1289530Pylaiella littoralis U1_48CDSP-littoralis_Contig7 1289393..1289530 +
1680791447.0859144-CDS-P-littoralis_Contig7:1289696..12898821680791447.0859144-CDS-P-littoralis_Contig7:1289696..1289882Pylaiella littoralis U1_48CDSP-littoralis_Contig7 1289697..1289882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.330.1prot_P-littoralis_Contig7.330.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 1289393..1289882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.330.1

>prot_P-littoralis_Contig7.330.1 ID=prot_P-littoralis_Contig7.330.1|Name=mRNA_P-littoralis_Contig7.330.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
QDNNQNIRAAEALCRQAVRIWELFLWRSHPQLAQGYETLASLIKHQAERL
GEAEELLRRALEIRETKLGADVQVAFTLHSLGQCVRQAGRLGEAEELFRR
ALEIKEAK
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mRNA from alignment at P-littoralis_Contig7:1289393..1289882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.330.1 ID=mRNA_P-littoralis_Contig7.330.1|Name=mRNA_P-littoralis_Contig7.330.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=490bp|location=Sequence derived from alignment at P-littoralis_Contig7:1289393..1289882+ (Pylaiella littoralis U1_48)
CAGGATAACAATCAAAATATTCGAGCGGCAGAGGCTTTGTGCCGGCAAGC
TGTGCGAATCTGGGAACTTTTCCTATGGCGTTCACATCCACAGTTGGCGC
AGGGATACGAGACGCTGGCGTCATTGATCAAGCACCAGGTGAAAATTTGA
GCCAGTTTGTGAAATTTCGAAGGTCTTAGATAGGTCTCGCAGTTTTCCGA
CACATCGAGGAGATCGAAACGCGGCTGTTTAGCTAGTCGAGAGAATATGC
TTGGGCCAGATCACTTTGACATGGCCGACTCGCTCAAACGTGTGTGAACT
ACAGGCGGAGCGACTGGGGGAGGCGGAGGAGTTACTAAGGCGAGCACTAG
AAATCAGGGAGACCAAGTTGGGGGCCGACGTACAGGTTGCCTTCACACTA
CACTCGCTGGGTCAGTGTGTGCGGCAGGCGGGGCGACTGGGGGAGGCGGA
AGAGTTGTTCAGGCGAGCGCTGGAGATCAAGGAGGCCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig7:1289393..1289882+

>mRNA_P-littoralis_Contig7.330.1 ID=mRNA_P-littoralis_Contig7.330.1|Name=mRNA_P-littoralis_Contig7.330.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig7:1289393..1289882+ (Pylaiella littoralis U1_48)
CAGGATAACAATCAAAATATTCGAGCGGCAGAGGCTTTGTGCCGGCAAGC
TGTGCGAATCTGGGAACTTTTCCTATGGCGTTCACATCCACAGTTGGCGC
AGGGATACGAGACGCTGGCGTCATTGATCAAGCACCAGGCGGAGCGACTG
GGGGAGGCGGAGGAGTTACTAAGGCGAGCACTAGAAATCAGGGAGACCAA
GTTGGGGGCCGACGTACAGGTTGCCTTCACACTACACTCGCTGGGTCAGT
GTGTGCGGCAGGCGGGGCGACTGGGGGAGGCGGAAGAGTTGTTCAGGCGA
GCGCTGGAGATCAAGGAGGCCAAG
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