mRNA_P-littoralis_Contig7.328.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig7.328.1
Unique NamemRNA_P-littoralis_Contig7.328.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig7.328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig7contigP-littoralis_Contig7:1280581..1280963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size205
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791447.0291793-CDS-P-littoralis_Contig7:1280581..12806901680791447.0291793-CDS-P-littoralis_Contig7:1280581..1280690Pylaiella littoralis U1_48CDSP-littoralis_Contig7 1280582..1280690 -
1680791447.0406432-CDS-P-littoralis_Contig7:1280868..12809631680791447.0406432-CDS-P-littoralis_Contig7:1280868..1280963Pylaiella littoralis U1_48CDSP-littoralis_Contig7 1280869..1280963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig7.328.1prot_P-littoralis_Contig7.328.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig7 1280582..1280963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig7.328.1

>prot_P-littoralis_Contig7.328.1 ID=prot_P-littoralis_Contig7.328.1|Name=mRNA_P-littoralis_Contig7.328.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
DGVVTSRSRRKKSARVLKPISPAACDILEERRSSTVVLHKTDPFERDSEL
LARGSLDLQQAAKLVVLN
back to top

mRNA from alignment at P-littoralis_Contig7:1280581..1280963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig7.328.1 ID=mRNA_P-littoralis_Contig7.328.1|Name=mRNA_P-littoralis_Contig7.328.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=383bp|location=Sequence derived from alignment at P-littoralis_Contig7:1280581..1280963- (Pylaiella littoralis U1_48)
GACGGCGTTGTCACGTCCAGGAGTAGACGAAAGAAATCTGCGCGTGTATT
GAAGCCCATCAGCCCTGCTGCCTGCGATATCTTGGAAGAGAGGAGGTGAA
GCACCAGTACGCCTTCCTTTTGCCTGTTTTGTCGGTTAGTGTCGATGTGT
ACCATAATTATGTGGTGCGTGGTTGTTTTTCACATAGTTCACTATTCTAT
TACGTTTCTTCCTTGTAATCCAAGCCGCCTATTTACCTTCTTTACCCCAA
ACACACTCAACTATCTTCAACAGATCGTCGACGGTCGTACTTCACAAGAC
CGACCCCTTTGAGAGAGACTCGGAGCTTCTGGCACGCGGTAGCCTCGATC
TTCAGCAAGCGGCTAAACTTGTTGTGCTGAACC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig7:1280581..1280963-

>mRNA_P-littoralis_Contig7.328.1 ID=mRNA_P-littoralis_Contig7.328.1|Name=mRNA_P-littoralis_Contig7.328.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig7:1280581..1280963- (Pylaiella littoralis U1_48)
GACGGCGTTGTCACGTCCAGGAGTAGACGAAAGAAATCTGCGCGTGTATT
GAAGCCCATCAGCCCTGCTGCCTGCGATATCTTGGAAGAGAGGAGATCGT
CGACGGTCGTACTTCACAAGACCGACCCCTTTGAGAGAGACTCGGAGCTT
CTGGCACGCGGTAGCCTCGATCTTCAGCAAGCGGCTAAACTTGTTGTGCT
GAAC
back to top